Mock Version: 1.4.9
Mock Version: 1.4.9
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/f29-build-26091-13554/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fdb2e8>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Wrote: /builddir/build/SRPMS/rdkit-2018.03.2-2.fc29.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/f29-build-26091-13554/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fdb2e8>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.fDt9iG
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf rdkit-Release_2018_03_2
+ /usr/bin/mkdir -p rdkit-Release_2018_03_2
+ cd rdkit-Release_2018_03_2
+ /usr/bin/gzip -dc /builddir/build/SOURCES/Release_2018_03_2.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ mv rdkit-Release_2018_03_2 python2
+ pushd python2
~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
Patch #0 (rdkit-2015.03-use_cairo_backend_on_tests.patch):
+ echo 'Patch #0 (rdkit-2015.03-use_cairo_backend_on_tests.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file rdkit/Chem/Draw/UnitTestSimilarityMaps.py
Hunk #1 succeeded at 169 (offset 71 lines).
Patch #1 (rdkit-2018.03-do_not_install_sping.patch):
+ echo 'Patch #1 (rdkit-2018.03-do_not_install_sping.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 220 (offset 2 lines).
Hunk #2 succeeded at 228 (offset 2 lines).
Patch #2 (rdkit-2018.03-fix_cmake_files_path.patch):
+ echo 'Patch #2 (rdkit-2018.03-fix_cmake_files_path.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 132 (offset 5 lines).
Hunk #2 succeeded at 148 (offset 5 lines).
Patch #3 (rdkit-2018.03.2-fix_libraries_soname.patch):
+ echo 'Patch #3 (rdkit-2018.03.2-fix_libraries_soname.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file Code/cmake/Modules/RDKitUtils.cmake
+ rm -rf rdkit/sping
+ cp -pr license.txt ReleaseNotes.md ../
+ popd
~/build/BUILD/rdkit-Release_2018_03_2
+ cp -a python2 python3
+ find python3 -name '*.py'
+ xargs sed -i '1s|^#!.*|#!/usr/bin/python3|'
+ find python3 -name test_list.py
+ xargs sed -i 's/"python"/"python3"/g'
+ find python3 -name test_list.py
+ xargs sed -i 's/'\''python'\''/'\''python3'\''/g'
+ sed -i.orig s/python/python3/g python3/Projects/DbCLI/TestDbCLI.py
+ find python2 -name '*.py'
+ xargs sed -i '1s|^#!.*|#!/usr/bin/python2|'
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.lX5P4l
+ exit 0
+ umask 022
~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
+ export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed'
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed'
+ pushd python2
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=ON -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -D RDK_OPTIMIZE_NATIVE:BOOL=OFF .
-- The C compiler identification is GNU 8.2.1
-- The CXX compiler identification is GNU 8.2.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Found INCHI: /usr/lib64/libinchi.so  
-- Found PythonInterp: /usr/bin/python2 (found version "2.7.15") 
-- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.15") 
-- Boost version: 1.66.0
-- Found the following Boost libraries:
--   python
BUILDSTDERR: Python Install directory /usr/lib64/python2.7/site-packages
BUILDSTDERR: PYTHON Py_ENABLE_SHARED: 1
BUILDSTDERR: PYTHON USING LINK LINE: -pthread -shared -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Boost version: 1.66.0
-- Found the following Boost libraries:
--   serialization
-- Found PostgreSQL: /usr/lib64/libpq.so (found version "10.3") 
BUILDSTDERR: == Using strict rotor definition
-- Found BISON: /usr/bin/bison  
-- Found FLEX: /usr/bin/flex  
BUILDSTDERR: == Updating Filters.cpp from pains file
== Done updating pains files
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.5.3") 
-- Checking for module 'cairo'
--   Found cairo, version 1.15.12
-- Found Cairo: /usr/include/cairo  
BUILDSTDERR: postgres: /usr/include;/usr/include/pgsql/server
BUILDSTDERR: =====================================================================
BUILDSTDERR: After building, check
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/pgsql_install.sh
BUILDSTDERR: for correctness of installation paths. If everything is OK, gain 
BUILDSTDERR: administrator privileges, stop the PostgreSQL service, run
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/pgsql_install.sh
BUILDSTDERR: to install the PostgreSQL RDKit cartridge, then start again
BUILDSTDERR: the PostgreSQL service
BUILDSTDERR: =====================================================================
-- Configuring done
-- Generating done
BUILDSTDERR: CMake Warning:
BUILDSTDERR:   Manually-specified variables were not used by the project:
BUILDSTDERR:     CMAKE_CXX_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_C_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_Fortran_FLAGS_RELEASE
BUILDSTDERR:     INCLUDE_INSTALL_DIR
BUILDSTDERR:     LIB_INSTALL_DIR
BUILDSTDERR:     SHARE_INSTALL_PREFIX
BUILDSTDERR:     SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2
+ make -j4
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2018_03_2/python2 -B/builddir/build/BUILD/rdkit-Release_2018_03_2/python2 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/rdkit/Chem/inchi.py
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so
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[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/ExplicitBitVect.cpp
[  4%] Linking CXX shared library ../../lib/libRDKitRDBoost.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2018.03.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2018.03.2 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
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Scanning dependencies of target testDict
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Utils.cpp
[  4%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/testDict.cpp
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
Scanning dependencies of target testMatrices
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  4%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/testMatrices.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRDValue.dir/testRDValue.cpp.o  -o testRDValue -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/base64.cpp
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
Scanning dependencies of target Catalogs
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs/Catalog.cpp
[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/BitOps.cpp
[  5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs/CatalogParams.cpp
[  5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs/CatalogEntry.cpp
[  6%] Linking CXX shared library ../../lib/libRDKitCatalogs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2018.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so
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make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
Scanning dependencies of target testQuery
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[  6%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query/test.cpp
[  6%] Linking CXX executable testMatrices
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o  -o testMatrices -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/DiscreteDistMat.cpp
Scanning dependencies of target testMatCalc
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/DiscreteValueVect.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/FPBReader.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/DistPicker.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testQuery.dir/test.cpp.o  -o testQuery -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKithc.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so
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Scanning dependencies of target rdBase
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  8%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap/RDBase.cpp
[  9%] Linking CXX shared library ../../lib/libRDKitDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2018.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  9%] Built target DataStructs
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
[  9%] Linking CXX executable testChemicalFeatures
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1
Scanning dependencies of target testSimDivPickers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o  -o testChemicalFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[  9%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/testPickers.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  9%] Built target testChemicalFeatures
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSimDivPickers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 10%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
[ 11%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKithc.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 11%] Built target Clustering
[ 11%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap/RDBase.cpp:15:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 11%] Linking CXX executable testSimDivPickers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o  -o testSimDivPickers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread ../../lib/libRDKithc.so.1.2018.03.2 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
[ 11%] Built target testSimDivPickers
Scanning dependencies of target InfoTheory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 11%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp
[ 11%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory && /usr/bin/c++  -DInfoTheory_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/InfoBitRanker.cpp
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
Scanning dependencies of target RDGeometryLib
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 11%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.cpp
[ 11%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so
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[ 11%] Built target InfoTheory
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
Scanning dependencies of target testDataStructs
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 12%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp
[ 12%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../../lib/libRDKithc.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 12%] Built target rdSimDivPickers
[ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Transform2D.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp: In function 'int main()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp:1398:12: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
BUILDSTDERR:    } catch (IndexErrorException) {
BUILDSTDERR:             ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp: In instantiation of 'void Test(T) [with T = SparseBitVect]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp:1417:17:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp:118:5: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
BUILDSTDERR:    } catch (IndexErrorException) {
BUILDSTDERR:      ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp: In instantiation of 'void Test(T) [with T = ExplicitBitVect]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp:1423:19:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testDatastructs.cpp:118:5: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
Scanning dependencies of target testFPB
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 12%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testFPB.cpp
[ 13%] Linking CXX executable testFPB
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o  -o testFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
[ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Transform3D.cpp
Scanning dependencies of target testMultiFPB
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 13%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/testMultiFPB.cpp
[ 13%] Linking CXX executable testDataStructs
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o  -o testDataStructs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/UniformGrid3D.cpp
[ 14%] Linking CXX shared module ../../../rdkit/rdBase.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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[ 14%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/GridUtils.cpp
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
Scanning dependencies of target cDataStructs
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[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/DataStructs.cpp
[ 15%] Linking CXX executable testMultiFPB
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o  -o testMultiFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMetricMatrixCalc
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 15%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
[ 16%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
Scanning dependencies of target rdInfoTheory
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 16%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp
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[ 16%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp
[ 17%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 18%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
Scanning dependencies of target cQuantize
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[ 18%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data/cQuantize.cpp
[ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/SparseIntVect.cpp
[ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp
[ 18%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
Scanning dependencies of target GraphMol
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Atom.cpp
[ 18%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testTransforms
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 18%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/testTransforms.cpp
[ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o  -o testTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/testGrid.cpp
[ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryAtom.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o  -o testGrid -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target rdGeometry
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap/Point.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryBond.cpp
[ 19%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/wrap_BitOps.cpp
[ 20%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/wrap_FPB.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Bond.cpp
[ 21%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap/UniformGrid3D.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolOps.cpp
[ 21%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/wrap_Utils.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FindRings.cpp
[ 21%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 21%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap/rdGeometry.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ROMol.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 21%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
[ 21%] Built target cDataStructs
Scanning dependencies of target Alignment
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RWMol.cpp
[ 21%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment && /usr/bin/c++  -DAlignment_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/AlignPoints.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 21%] Built target rdGeometry
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PeriodicTable.cpp
[ 21%] Linking CXX shared library ../../../lib/libRDKitAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2018.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
Scanning dependencies of target Optimizer
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so
[ 21%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer && /usr/bin/c++  -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/BFGSOpt.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 21%] Built target Alignment
[ 21%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer && /usr/bin/c++  -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/LinearSearch.cpp
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
Scanning dependencies of target testAlignment
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 21%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/testAlignment.cpp
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
Scanning dependencies of target rdAlignment
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 21%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp
[ 21%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2018.03.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 21%] Built target Optimizer
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/atomic_data.cpp
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
Scanning dependencies of target testOptimizer
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/testOptimizer.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o  -o testAlignment -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolPickler.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o  -o testOptimizer -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
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[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/AtomIterators.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Canon.cpp
Scanning dependencies of target ForceField
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/AngleBend.cpp
[ 22%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/BondStretch.cpp
[ 22%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/Nonbonded.cpp
[ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/BondIterators.cpp
[ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Aromaticity.cpp
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/TorsionAngle.cpp
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/Inversion.cpp
[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Kekulize.cpp
[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDiscriminators.cpp
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/DistanceConstraint.cpp
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/AngleConstraint.cpp
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/TorsionConstraint.cpp
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/PositionConstraint.cpp
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/Params.cpp
[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ConjugHybrid.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/AngleBend.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/BondStretch.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/AddHs.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Matrices.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/StretchBend.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Chirality.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/AddHs.cpp: In function 'bool RDKit::MolOps::{anonymous}::adjustStereoAtomsIfRequired(RDKit::RWMol&, const RDKit::Atom*, const RDKit::Atom*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/AddHs.cpp:497:9: warning: unused variable 'dblBond' [-Wunused-variable]
BUILDSTDERR:    Bond *dblBond = nullptr;
BUILDSTDERR:          ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Chirality.cpp: In function 'bool RDKit::MolOps::{anonymous}::isBondCandidateForStereo(const RDKit::Bond*, const RDKit::ROMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Chirality.cpp:1737:62: warning: unused parameter 'mol' [-Wunused-parameter]
BUILDSTDERR:  bool isBondCandidateForStereo(const Bond *bond, const ROMol &mol) {
BUILDSTDERR:                                                  ~~~~~~~~~~~~~^~~
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/OopBend.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RingInfo.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/TorsionAngle.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Conformer.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/Nonbonded.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Renumber.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/DistanceConstraint.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/AngleConstraint.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/AdjustQuery.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Resonance.cpp
[ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/TorsionConstraint.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/new_canon.cpp
[ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/PositionConstraint.cpp
[ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/Params.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/Params.cpp: In constructor 'ForceFields::MMFF::MMFFAromCollection::MMFFAromCollection(const uint8_t*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/Params.cpp:50:49: warning: division 'sizeof (const uint8_t* {aka const unsigned char*}) / sizeof (const uint8_t {aka const unsigned char})' does not compute the number of array elements [-Wsizeof-pointer-div]
BUILDSTDERR:    for (unsigned int i = 0; i < sizeof(mmffArom) / sizeof(mmffArom[0]); ++i) {
BUILDSTDERR:                                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/Params.cpp:46:62: note: first 'sizeof' operand was declared here
BUILDSTDERR:  MMFFAromCollection::MMFFAromCollection(const boost::uint8_t *mmffArom) {
BUILDSTDERR:                                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
[ 28%] Linking CXX shared library ../../lib/libRDKitGraphMol.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2018.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 29%] Linking CXX shared library ../../lib/libRDKitForceField.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2018.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 29%] Built target ForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 29%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
[ 29%] [FLEX][SmartsL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmarts_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp smarts.ll
Scanning dependencies of target MolTransforms
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make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
Scanning dependencies of target SubstructMatch
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Scanning dependencies of target Subgraphs
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[ 29%] [BISON][SmilesY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/smiles.tab.cpp smiles.yy
[ 30%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/SubstructMatch.cpp
[ 30%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms && /usr/bin/c++  -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/MolTransforms.cpp
[ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/Subgraphs.cpp
[ 30%] [BISON][SmartsY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -pyysmarts_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp smarts.yy
BUILDSTDERR: smarts.yy: warning: 108 shift/reduce conflicts [-Wconflicts-sr]
[ 31%] [FLEX][SmilesL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmiles_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp smiles.ll
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SmilesParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/SmilesParse.cpp
[ 31%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp
[ 32%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 32%] Built target MolTransforms
[ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
[ 32%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/SubstructUtils.cpp
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target PartialCharges
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 32%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/c++  -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp
[ 32%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 32%] Built target Subgraphs
[ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/SmilesWrite.cpp
[ 32%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 32%] Built target SubstructMatch
[ 33%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp
[ 34%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/c++  -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/GasteigerParams.cpp
[ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Built target PartialCharges
[ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/smiles.tab.cpp
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolTransforms
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp
BUILDSTDERR: smiles.yy: In function 'void yysmiles_error(const char*, std::vector<RDKit::RWMol*>*, std::__cxx11::list<unsigned int>*, void*, const char*)':
BUILDSTDERR: smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter]
BUILDSTDERR:  yysmiles_error( const char *input,
BUILDSTDERR:                  ~~~~~~~~~~~~^~~~~
BUILDSTDERR: smiles.yy:40:42: warning: unused parameter 'branchPoints' [-Wunused-parameter]
BUILDSTDERR:                  std::list<unsigned int> *branchPoints,
BUILDSTDERR:                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
BUILDSTDERR: smiles.yy:41:9: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR:    void *scanner,const char * msg )
BUILDSTDERR:    ~~~~~~^~~~~~~
[ 35%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 35%] Built target rdMolTransforms
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp
Scanning dependencies of target ShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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Scanning dependencies of target MolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 35%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
[ 35%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/c++  -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
BUILDSTDERR: smarts.yy: In function 'void yysmarts_error(const char*, std::vector<RDKit::RWMol*>*, void*, const char*)':
BUILDSTDERR: smarts.yy:24:29: warning: unused parameter 'input' [-Wunused-parameter]
BUILDSTDERR:  yysmarts_error( const char *input,
BUILDSTDERR:                  ~~~~~~~~~~~~^~~~~
BUILDSTDERR: smarts.yy:25:46: warning: unused parameter 'ms' [-Wunused-parameter]
BUILDSTDERR:                  std::vector<RDKit::RWMol *> *ms,
BUILDSTDERR:                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
BUILDSTDERR: smarts.yy:26:9: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR:    void *scanner,const char * msg )
BUILDSTDERR:    ~~~~~~^~~~~~~
[ 35%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
Scanning dependencies of target Trajectory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 35%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/Trajectory.cpp
[ 36%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/c++  -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 36%] Built target MolCatalog
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
[ 36%] [FLEX][SlnL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/flex -Pyysln_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/lex.yysln.cpp sln.ll
[ 36%] [BISON][SlnY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/bison -pyysln_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/sln.tab.cpp sln.yy
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 36%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/SLNParse.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 36%] Built target ShapeHelpers
[ 36%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/SLNAttribs.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2018.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 37%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
[ 37%] Built target SmilesParse
[ 37%] Built target Trajectory
Scanning dependencies of target rdqueries
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
[ 37%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/lex.yysln.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 38%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/sln.tab.cpp
[ 38%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/rdqueries.cpp
BUILDSTDERR: sln.yy:54: warning: "YYDEBUG" redefined
BUILDSTDERR:  #define YYDEBUG 1
BUILDSTDERR:  
BUILDSTDERR: In file included from sln.yy:50:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/sln.tab.hpp:37: note: this is the location of the previous definition
BUILDSTDERR:  # define YYDEBUG 0
BUILDSTDERR:  
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 38%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp
BUILDSTDERR: sln.yy: In function 'void yysln_error(const char*, std::vector<RDKit::RWMol*>*, bool, void*, const char*)':
BUILDSTDERR: sln.yy:58:43: warning: unused parameter 'ms' [-Wunused-parameter]
BUILDSTDERR:               std::vector<RDKit::RWMol *> *ms,bool doQ,
BUILDSTDERR:               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
BUILDSTDERR: sln.yy:58:51: warning: unused parameter 'doQ' [-Wunused-parameter]
BUILDSTDERR:               std::vector<RDKit::RWMol *> *ms,bool doQ,
BUILDSTDERR:                                               ~~~~~^~~
BUILDSTDERR: sln.yy:59:13: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR:        void *scanner,const char * msg )
BUILDSTDERR:        ~~~~~~^~~~~~~
[ 38%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Queries.cpp
[ 38%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp
[ 38%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 38%] Built target SLNParse
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
Scanning dependencies of target Depictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Scanning dependencies of target ForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 38%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/RDDepictor.cpp
[ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryAtom.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RDKitQueries.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Queries.cpp:15:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:820:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = bool]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:820:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = bool]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoords(RDKit::ROMol&, const INT_POINT2D_MAP*, bool, bool, unsigned int, unsigned int, int, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/RDDepictor.cpp:310:58: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
BUILDSTDERR:                               bool permuteDeg4Nodes, bool forceRDKit) {
BUILDSTDERR:                                                      ~~~~~^~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoordsMimicDistMat(RDKit::ROMol&, const DOUBLE_SMART_PTR*, bool, bool, double, unsigned int, unsigned int, int, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/RDDepictor.cpp:421:10: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
BUILDSTDERR:      bool forceRDKit) {
BUILDSTDERR:      ~~~~~^~~~~~~~~~
[ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
[ 39%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Built target rdChemicalFeatures
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target MolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/c++  -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/AlignMolecules.cpp
[ 39%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 39%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/c++  -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Built target rdqueries
[ 39%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/EmbeddedFrag.cpp
[ 39%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
[ 39%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/DepictUtils.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp: In member function 'void RDKit::MMFF::MMFFMolProperties::setMMFFHydrogenType(const RDKit::Atom*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2343:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              if (isHOS) {
BUILDSTDERR:              ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2350:11: note: here
BUILDSTDERR:            default:
BUILDSTDERR:            ^~~~~~~
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMemTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/memtest1.cpp
[ 39%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 39%] Linking CXX shared library ../../../lib/libRDKitDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.03.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 39%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Built target MolAlign
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestCanon
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testCanon.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Built target Depictor
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
Scanning dependencies of target test-valgrind
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/test-valgrind.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testCanon.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testCanon.cpp:180:18: warning: catching polymorphic type 'class RDKit::MolSanitizeException' by value [-Wcatch-value=]
BUILDSTDERR:          } catch (MolSanitizeException) {
BUILDSTDERR:                   ^~~~~~~~~~~~~~~~~~~~
[ 40%] Linking CXX executable graphmolMemTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o  -o graphmolMemTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolqueryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/querytest.cpp
[ 40%] Linking CXX executable graphmoltestCanon
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o  -o graphmoltestCanon -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 41%] Linking CXX executable test-valgrind
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o  -o test-valgrind -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 41%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolIterTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/itertest.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolcpTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/cptest.cpp
[ 42%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryAtom.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RDKitQueries.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/querytest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:820:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:820:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
[ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
[ 43%] Linking CXX executable graphmolcpTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o  -o graphmolcpTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 43%] Linking CXX executable graphmolIterTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o  -o graphmolIterTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 43%] Built target graphmolcpTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target graphmolIterTest
[ 44%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
[ 44%] Linking CXX executable graphmolqueryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o  -o graphmolqueryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp: In function 'void RDKit::MolFragmenter::{anonymous}::checkChiralityPostMove(const RDKit::ROMol&, const RDKit::Atom*, RDKit::Atom*, const RDKit::Bond*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:367:16: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
BUILDSTDERR:        if (bidx != bond->getIdx()) {
BUILDSTDERR:            ~~~~~^~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target graphmolqueryTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smaTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/smatest.cpp
[ 44%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Filters.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
[ 45%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so
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[ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/Fingerprints.cpp
[ 46%] Linking CXX executable testSubgraphs1
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o  -o testSubgraphs1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
[ 46%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
[ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
[ 47%] Linking CXX executable smaTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o  -o smaTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/AtomPairs.cpp
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs2
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/test2.cpp
[ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
[ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/MACCS.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
[ 47%] Linking CXX executable testSubgraphs2
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o  -o testSubgraphs2 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 48%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/test1.cpp
[ 48%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
[ 48%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
[ 49%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 49%] Linking CXX executable testPartialCharges
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o  -o testPartialCharges -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
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[ 49%] Built target Fingerprints
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 49%] Built target testPartialCharges
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceFieldHelpers
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[ 49%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
[ 49%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target MolChemicalFeatures
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 49%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
[ 49%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
[ 49%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 49%] Built target rdPartialCharges
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdShapeHelpers
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 49%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
[ 49%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
[ 49%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 49%] Built target rdForceFieldHelpers
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target ReducedGraphs
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 49%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
[ 50%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/FragCatParams.cpp
[ 50%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Conformer.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ROMol.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h: In function 'boost::python::tuple RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                      ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                                  ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                      ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                                  ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                      ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                                  ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                      ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                                  ~~~~~~^
[ 50%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 50%] Built target rdShapeHelpers
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
[ 50%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
Scanning dependencies of target SubstructLibrary
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 50%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
[ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
[ 52%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Built target ReducedGraphs
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target testSLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/test.cpp
[ 52%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Built target FragCatalog
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
[ 52%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Built target SubstructLibrary
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
Scanning dependencies of target rdchem
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/rdchem.cpp
[ 52%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 52%] Built target MolChemicalFeatures
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
Scanning dependencies of target rdtrajectory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Trajectory.cpp
[ 53%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/rdTrajectory.cpp
[ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Table.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Table.cpp
[ 53%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1
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[ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Atom.cpp
[ 53%] Linking CXX executable testSLNParse
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSLNParse.dir/test.cpp.o  -o testSLNParse -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDInchiLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/inchi.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/Mol2FileParser.cpp
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[ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o
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[ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Bond.cpp
[ 55%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/DistViolationContrib.cpp
[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileParser.cpp
[ 55%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/ChiralViolationContrib.cpp
[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileStereochem.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileParser.cpp: In function 'RDKit::Bond* RDKit::{anonymous}::ParseMolFileBondLine(const string&, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileParser.cpp:1408:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:      } catch (boost::bad_lexical_cast) {
BUILDSTDERR:                      ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileParser.cpp:1436:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:      } catch (boost::bad_lexical_cast) {
BUILDSTDERR:                      ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileParser.cpp:1444:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:      } catch (boost::bad_lexical_cast) {
BUILDSTDERR:                      ^~~~~~~~~~~~~~~~
[ 55%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 55%] Built target DistGeometry
[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp
[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp: In function 'std::__cxx11::string RDKit::MolToMolBlock(const RDKit::ROMol&, bool, int, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp:1196:12: warning: catching polymorphic type 'class RDKit::{anonymous}::RequiresV3000Exception' by value [-Wcatch-value=]
BUILDSTDERR:    } catch (RequiresV3000Exception) {
BUILDSTDERR:             ^~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o
[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SDMolSupplier.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Mol.cpp
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/Conformer.cpp
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/RingInfo.cpp
[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SDWriter.cpp
[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/EditableMol.cpp
[ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/MonomerInfo.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RDKitBase.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/EditableMol.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/EditableMol.cpp: In destructor 'RDKit::{anonymous}::EditableMol::~EditableMol()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:112:11: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:      throw inv;                                                             \
BUILDSTDERR:            ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:112:11: note: in definition of macro 'PRECONDITION'
BUILDSTDERR:      throw inv;                                                             \
BUILDSTDERR:            ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:112:11: note: in C++11 destructors default to noexcept
BUILDSTDERR:      throw inv;                                                             \
BUILDSTDERR:            ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:112:11: note: in definition of macro 'PRECONDITION'
BUILDSTDERR:      throw inv;                                                             \
BUILDSTDERR:            ^~~
[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SmilesWriter.cpp
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceField
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 58%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap/ForceField.cpp
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTWriter.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/types.h:26,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/MolWriters.h:14,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTWriter.cpp: In destructor 'virtual RDKit::TDTWriter::~TDTWriter()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:104:11: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:      throw inv;                                                         \
BUILDSTDERR:            ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
BUILDSTDERR:      CHECK_INVARIANT(dp_ostream,
BUILDSTDERR:      ^~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/Invariant.h:104:11: note: in C++11 destructors default to noexcept
BUILDSTDERR:      throw inv;                                                         \
BUILDSTDERR:            ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
BUILDSTDERR:      CHECK_INVARIANT(dp_ostream,
BUILDSTDERR:      ^~~~~~~~~~~~~~~
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TplFileParser.cpp
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/TplFileWriter.cpp
[ 58%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBParser.cpp
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[ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o
[ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/MolBundle.cpp
Scanning dependencies of target testDistGeom
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/testDistGeom.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBParser.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
BUILDSTDERR:  static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
BUILDSTDERR:                      ^~~~~~~~~~~~
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp
[ 58%] Linking CXX executable testDistGeom
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeom
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[ 59%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap && /usr/bin/c++  -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap/DistGeom.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp: In function 'std::__cxx11::string RDKit::GetPDBBondLines(const RDKit::Atom*, bool, bool, bool, unsigned int&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:163:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          v.push_back(dst);
BUILDSTDERR:          ~~~~~~~~~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:164:7: note: here
BUILDSTDERR:        case Bond::TRIPLE:
BUILDSTDERR:        ^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:165:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          v.push_back(dst);
BUILDSTDERR:          ~~~~~~~~~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:166:7: note: here
BUILDSTDERR:        case Bond::DOUBLE:
BUILDSTDERR:        ^~~~
[ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/PDBSupplier.cpp
[ 60%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolChemicalFeatures
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make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 60%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
[ 60%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 60%] Built target DistGeom
[ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp
[ 61%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp:10:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
BUILDSTDERR:  static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
BUILDSTDERR:                      ^~~~~~~~~~~~
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SequenceParsers.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/SequenceWriters.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
[ 61%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
[ 61%] Built target rdchem
Scanning dependencies of target testReducedGraphs
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 61%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/test1.cpp
[ 61%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
[ 61%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.03.2 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 61%] Linking CXX executable testReducedGraphs
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o  -o testReducedGraphs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 61%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target rdReducedGraphs
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 61%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 61%] Built target FileParsers
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
Scanning dependencies of target rdinchi
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 61%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap/pyInchi.cpp
Scanning dependencies of target Descriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 61%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Crippen.cpp
[ 61%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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[ 62%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/MolDescriptors.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Crippen.cpp: In constructor 'RDKit::Descriptors::CrippenParamCollection::CrippenParamCollection(const string&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Crippen.cpp:171:25: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:          } catch (boost::bad_lexical_cast) {
BUILDSTDERR:                          ^~~~~~~~~~~~~~~~
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceField
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 63%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/testUFFForceField.cpp
[ 64%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 64%] Built target rdReducedGraphs
[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/MolSurf.cpp
[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Lipinski.cpp
[ 64%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 64%] Linking CXX executable testUFFForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o  -o testUFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
[ 64%] Built target rdinchi
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeomHelpers
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make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
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Scanning dependencies of target graphmolMolOpsTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 64%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
[ 64%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/molopstest.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 64%] Built target testUFFForceField
[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp
[ 64%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Embedder.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/molopstest.cpp: In function 'void testRenumberAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/molopstest.cpp:4693:12: warning: unused variable 'nm' [-Wunused-variable]
BUILDSTDERR:      ROMol *nm = MolOps::renumberAtoms(*m, nVect);
BUILDSTDERR:             ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/molopstest.cpp: In function 'void testGithub1281()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/molopstest.cpp:6940:16: warning: unused variable 'm' [-Wunused-variable]
BUILDSTDERR:          RWMol *m = SmilesToMol(smiles);
BUILDSTDERR:                 ^
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/MQN.cpp
Scanning dependencies of target graphmolTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/test1.cpp
[ 65%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target DistGeomHelpers
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Property.cpp
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestChirality
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testChirality.cpp
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp
[ 66%] Linking CXX executable graphmolTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o  -o graphmolTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/USRDescriptor.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPickler
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testPickler.cpp
[ 66%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2018.03.2 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target Descriptors
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molBundleTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testMolBundle.cpp
[ 66%] Linking CXX executable graphmoltestChirality
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o  -o graphmoltestChirality -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 66%] Linking CXX executable molBundleTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o  -o molBundleTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
Scanning dependencies of target resMolSupplierTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/resMolSupplierTest.cpp
[ 67%] Linking CXX executable graphmoltestPickler
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o  -o graphmoltestPickler -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPicklerGlobalSetting
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testPicklerGlobalSettings.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
Scanning dependencies of target hanoiTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/hanoitest.cpp
[ 67%] Linking CXX executable resMolSupplierTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o  -o resMolSupplierTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target resMolSupplierTest
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target testDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/testDepictor.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testPicklerGlobalSettings.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:           ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:26: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:                     ~~~~~~^~~~~~
[ 67%] Linking CXX executable graphmolMolOpsTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o  -o graphmolMolOpsTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 67%] Linking CXX executable graphmoltestPicklerGlobalSetting
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o  -o graphmoltestPicklerGlobalSetting -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
[ 67%] Linking CXX executable testDepictor
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o  -o testDepictor -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 67%] Linking CXX executable hanoiTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o  -o hanoiTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target testDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smiTest1
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/test.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target hanoiTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
Scanning dependencies of target cxsmilesTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/cxsmiles_test.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'void RDDepict::setPreferCoordGen(bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:131:29: warning: unused parameter 'value' [-Wunused-parameter]
BUILDSTDERR:  void setPreferCoordGen(bool value) {
BUILDSTDERR:                         ~~~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/test.cpp: In function 'void testFail()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/test.cpp:167:14: warning: catching polymorphic type 'class RDKit::MolSanitizeException' by value [-Wcatch-value=]
BUILDSTDERR:      } catch (MolSanitizeException) {
BUILDSTDERR:               ^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'unsigned int RDDepict::Compute2DCoords(RDKit::ROMol&, bool, bool, boost::python::dict&, unsigned int, unsigned int, int, bool, double, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:49:61: warning: '*((void*)&<anonymous> +40)' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      cMap[id] = python::extract<RDGeom::Point2D>(coordMap[id]);
BUILDSTDERR:                                                              ^
[ 67%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target rdDepictor
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
Scanning dependencies of target testSequence
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/testSequence.cpp
[ 68%] Linking CXX executable cxsmilesTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o  -o cxsmilesTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target cxsmilesTest
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target fileParsersTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/test1.cpp
[ 69%] Linking CXX executable testSequence
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o  -o testSequence -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 69%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolSupplier
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/testMolSupplier.cpp
[ 69%] Linking CXX executable testMolSupplier
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o  -o testMolSupplier -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 69%] Linking CXX executable smiTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o  -o smiTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 69%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolWriter
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/testMolWriter.cpp
[ 70%] Linking CXX executable testMolWriter
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o  -o testMolWriter -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 70%] Linking CXX executable fileParsersTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o  -o fileParsersTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
Scanning dependencies of target testTplParser
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/testTpls.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Built target smiTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
Scanning dependencies of target testMol2ToMol
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/testMol2ToMol.cpp
[ 70%] Linking CXX executable testTplParser
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o  -o testTplParser -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Built target testTplParser
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubstructMatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/test1.cpp
[ 72%] Linking CXX executable testMol2ToMol
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o  -o testMol2ToMol -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 72%] Built target testMol2ToMol
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemReactions
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Reaction.cpp
[ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/MDLParser.cpp
[ 72%] Linking CXX executable testSubstructMatch
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o  -o testSubstructMatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 72%] Built target testSubstructMatch
[ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/DaylightParser.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 72%] Built target graphmolMolOpsTest
[ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionPickler.cpp
[ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionWriter.cpp
[ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionDepict.cpp
[ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
[ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionUtils.cpp
[ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/MoleculeParser.cpp
[ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/ReactionRunner.cpp
[ 74%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/PreprocessRxn.cpp
[ 74%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
[ 74%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 74%] Built target fileParsersTest1
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
[ 75%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
[ 75%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
Scanning dependencies of target filterCatalogTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfiltercatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
[ 75%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2018.03.2 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target ChemReactions
[ 75%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
[ 75%] Linking CXX executable filterCatalogTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o  -o filterCatalogTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
Scanning dependencies of target testFragCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 76%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/test1.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 76%] Built target filterCatalogTest
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfragcatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
[ 76%] Linking CXX executable testChemTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o  -o testChemTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
[ 76%] Linking CXX executable testFragCatalog
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o  -o testFragCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 76%] Built target testFragCatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target testDescriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/test.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 76%] Built target testChemTransforms
[ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/test.cpp: In function 'void testProperties()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/test.cpp:1912:14: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:      } catch (KeyErrorException) {
BUILDSTDERR:               ^~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/test.cpp: In function 'void testStereoCounting()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/test.cpp:1960:12: warning: catching polymorphic type 'class ValueErrorException' by value [-Wcatch-value=]
BUILDSTDERR:    } catch (ValueErrorException) {
BUILDSTDERR:             ^~~~~~~~~~~~~~~~~~~
[ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
Scanning dependencies of target testAUTOCORR2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:           ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:26: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:                     ~~~~~~^~~~~~
[ 76%] Linking CXX executable testAUTOCORR2D
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o  -o testAUTOCORR2D -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 76%] Built target testAUTOCORR2D
[ 77%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDescriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 77%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp
[ 78%] Linking CXX executable testDescriptors
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o  -o testDescriptors -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 79%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 79%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target rdfragcatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testFingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/test1.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target testDescriptors
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/test1.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Conformer.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ROMol.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/GraphMol.h:18,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributions(boost::python::api::object, boost::python::api::object)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      x = other.x;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      y = other.y;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:86:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      z = other.z;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      x = other.x;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      y = other.y;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:86:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      z = other.z;
BUILDSTDERR:          ~~~~~~^
[ 79%] Linking CXX executable testMolTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o  -o testMolTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target testMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target rdfiltercatalog
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Scanning dependencies of target testUFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
[ 79%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
[ 79%] Linking CXX executable testMMFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o  -o testMMFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testCrystalForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
[ 79%] Linking CXX executable testUFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o  -o testUFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 79%] Linking CXX executable testFingerprints
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o  -o testFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeomHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
[ 79%] Linking CXX executable testCrystalForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o  -o testCrystalForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target testCrystalForceField
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++  -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
[ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target rdMolDescriptors
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/testMolAlign.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target testFingerprints
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Conformer.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ROMol.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/GraphMol.h:18,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h: In function 'RDKit::INT_VECT RDKit::EmbedMultipleConfs(RDKit::ROMol&, unsigned int, unsigned int, int, bool, bool, double, bool, unsigned int, double, boost::python::dict&, double, bool, bool, int, bool, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      x = other.x;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h: In function 'int RDKit::EmbedMolecule(RDKit::ROMol&, unsigned int, int, bool, bool, double, bool, unsigned int, boost::python::dict&, double, bool, bool, bool, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      x = other.x;
BUILDSTDERR:          ~~~~~~^
[ 81%] Linking CXX executable testDistGeomHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o  -o testDistGeomHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target rdDistGeom
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target testDistGeomHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
[ 81%] Linking CXX executable testMolAlign
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o  -o testMolAlign -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target testMolAlign
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/test1.cpp
[ 81%] Linking CXX executable testShapeHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o  -o testShapeHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target testShapeHelpers
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
[ 81%] Linking CXX executable testFeatures
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o  -o testFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target testFeatures
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target MolDraw2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target rdMolAlign
[ 81%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
[ 81%] Linking CXX executable testMolCatalog
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o  -o testMolCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target testMolCatalog
[ 81%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/FMCS.cpp
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target MolHash
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/c++  -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/MolHash.cpp
[ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target rdMolCatalog
[ 81%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp
[ 81%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/c++  -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/HashToString.cpp
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target MMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 82%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA && /usr/bin/c++  -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/MMPA.cpp
[ 82%] Linking CXX shared library ../../../lib/libRDKitMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2018.03.2 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 82%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Seed.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 82%] Built target MolHash
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target StructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructChecker.cpp
[ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp
[ 82%] Linking CXX shared library ../../../lib/libRDKitMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.03.2 CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 82%] Built target MMPA
[ 83%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp
[ 83%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
[ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructureFlags.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::parseOptionsJSON(const string&, RDKit::StructureCheck::StructCheckerOptions&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:33:19: warning: unused variable 'iss' [-Wunused-variable]
BUILDSTDERR:      std::istream &iss = ss;
BUILDSTDERR:                    ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:356:12: warning: unused variable 'k' [-Wunused-variable]
BUILDSTDERR:    unsigned k = fscanf(fp, "%d", &n);
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::loadChargeDataTables(const string&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:665:46: warning: unused parameter 'path' [-Wunused-parameter]
BUILDSTDERR:  bool loadChargeDataTables(const std::string &path) {
BUILDSTDERR:                            ~~~~~~~~~~~~~~~~~~~^~~~
[ 83%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization -lcairo 
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target trajectoryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 83%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/trajectoryTest.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 83%] Built target MolDraw2D
[ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Utilites.cpp
[ 83%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
[ 84%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Pattern.cpp
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target substructLibraryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
[ 84%] Linking CXX shared library ../../../lib/libRDKitFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2018.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 85%] Linking CXX executable trajectoryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o  -o trajectoryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 85%] Built target trajectoryTest
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Stereo.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 85%] Built target FMCS
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:           ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:26: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:                     ~~~~~~^~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::Atom3Parity(RDKit::StructureCheck::stereo_bond_t*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Stereo.cpp:371:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else]
BUILDSTDERR:      if (ligands[i].direction != RDKit::Bond::NONE)
BUILDSTDERR:         ^
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/StripSmallFragments.cpp
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/ReCharge.cpp
[ 85%] Linking CXX executable substructLibraryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o  -o substructLibraryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 85%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSubstructLibrary
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 86%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
[ 86%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'bool RDKit::StructureCheck::ChargeFix::setpKaValues()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/ReCharge.cpp:166:24: warning: variable 'AAp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    const AugmentedAtom *AAp;
BUILDSTDERR:                         ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'int RDKit::StructureCheck::ChargeFix::markMostAcidicAtoms(double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/ReCharge.cpp:405:17: warning: unused variable 'atom' [-Wunused-variable]
BUILDSTDERR:      const Atom &atom = *Mol.getAtomWithIdx(i);
BUILDSTDERR:                  ^~~~
[ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Tautomer.cpp
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target RGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolops
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/rdmolops.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Tautomer.cpp: In member function 'bool RDKit::StructureCheck::StructCheckTautomer::applyTautomer(unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Tautomer.cpp:61:12: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
BUILDSTDERR:      if (-1 == ti || -1 == tj) continue;
BUILDSTDERR:          ~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Tautomer.cpp:61:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
BUILDSTDERR:      if (-1 == ti || -1 == tj) continue;
BUILDSTDERR:                      ~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Tautomer.cpp:36:18: warning: unused variable 'ntb' [-Wunused-variable]
BUILDSTDERR:    const unsigned ntb = toTautomer.getNumBonds();
BUILDSTDERR:                   ^~~
[ 87%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.03.2 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 87%] Built target StructChecker
[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/MolOps.cpp
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolfiles
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/rdmolfiles.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/MolOps.cpp:30:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 88%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 88%] Built target RGroupDecomposition
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
Scanning dependencies of target rdkit
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 88%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 88%] Built target rdSubstructLibrary
[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'double calcSparseStringDiceSml(const char*, unsigned int, const char*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:982:71: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  extern "C" double calcSparseStringDiceSml(const char *a, unsigned int sza,
BUILDSTDERR:                                                           ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:983:71: warning: unused parameter 'szb' [-Wunused-parameter]
BUILDSTDERR:                                            const char *b, unsigned int szb) {
BUILDSTDERR:                                                           ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsGT(const char*, unsigned int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1095:71: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  extern "C" bool calcSparseStringAllValsGT(const char *a, unsigned int sza,
BUILDSTDERR:                                                           ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsLT(const char*, unsigned int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1133:71: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  extern "C" bool calcSparseStringAllValsLT(const char *a, unsigned int sza,
BUILDSTDERR:                                                           ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1434:38: warning: unused parameter 'data' [-Wunused-parameter]
BUILDSTDERR:  extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
BUILDSTDERR:                                ~~~~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1434:49: warning: unused parameter 'isQuery' [-Wunused-parameter]
BUILDSTDERR:  extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
BUILDSTDERR:                                             ~~~~~^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1435:44: warning: unused parameter 'bitFlags' [-Wunused-parameter]
BUILDSTDERR:                                unsigned int bitFlags) {
BUILDSTDERR:                                ~~~~~~~~~~~~~^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1874:21: warning: unused variable 'fp' [-Wunused-variable]
BUILDSTDERR:      FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
BUILDSTDERR:                      ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1896:21: warning: unused variable 'fp' [-Wunused-variable]
BUILDSTDERR:      FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
BUILDSTDERR:                      ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'char* findMCSsmiles(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/adapter.cpp:1941:12: warning: unused variable 'nmols' [-Wunused-variable]
BUILDSTDERR:    int len, nmols = 0;
BUILDSTDERR:             ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
Scanning dependencies of target testInchi
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 88%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/test.cpp
[ 88%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bfp_op.c
[ 89%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/cache.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/cache.c
[ 89%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/guc.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/guc.c
[ 89%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/low_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/low_gist.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration]
BUILDSTDERR:    fcinfo->flinfo->fn_extra = searchSfpCache(
BUILDSTDERR:                               ^~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to 'void *' from 'int' makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:    fcinfo->flinfo->fn_extra = searchSfpCache(
BUILDSTDERR:                             ^
[ 89%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/mol_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:34:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition':
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:33:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:484:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
BUILDSTDERR:      PG_RETURN_INT32((int32)lst);
BUILDSTDERR:                      ^
BUILDSTDERR: /usr/include/pgsql/server/postgres.h:386:39: note: in definition of macro 'SET_4_BYTES'
BUILDSTDERR:  #define SET_4_BYTES(value) (((Datum) (value)) & 0xffffffff)
BUILDSTDERR:                                        ^~~~~
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:314:36: note: in expansion of macro 'Int32GetDatum'
BUILDSTDERR:  #define PG_RETURN_INT32(x)  return Int32GetDatum(x)
BUILDSTDERR:                                     ^~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:484:5: note: in expansion of macro 'PG_RETURN_INT32'
BUILDSTDERR:      PG_RETURN_INT32((int32)lst);
BUILDSTDERR:      ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:34:
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR:  }
BUILDSTDERR:  ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR:  }
BUILDSTDERR:  ^
[ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SDMolSupplier.cpp
[ 89%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rdkit_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit declaration of function 'floor' [-Wimplicit-function-declaration]
BUILDSTDERR:    return (int) floor(10000*soergeldistsign(a, b));
BUILDSTDERR:                 ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible implicit declaration of built-in function 'floor'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:275:16: note: include '<math.h>' or provide a declaration of 'floor'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:42:1:
BUILDSTDERR: +#include <math.h>
BUILDSTDERR:  
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:275:16:
BUILDSTDERR:    return (int) floor(10000*soergeldistsign(a, b));
BUILDSTDERR:                 ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable]
BUILDSTDERR:    double d;
BUILDSTDERR:           ^
[ 89%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bfp_gist.c
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_gin.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bfp_gin.c
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bitstring.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bitstring.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:    int i;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:    int i;
BUILDSTDERR:        ^
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rdkit_io.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rdkit_io.c
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rxn_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rxn_op.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment]
BUILDSTDERR:  //  /* keep compiler quiet - no extra ; */                                \
BUILDSTDERR:  ^
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/sfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/sfp_op.c
[ 91%] Linking CXX shared library librdkit.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/sql
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/data
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/expected
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o  -L/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/lib64 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/lib64:/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib -lpq ../../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 -lboost_serialization -lcairo ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 91%] Built target rdkit
[ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/TDTMolSupplier.cpp
[ 91%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 -lcairo ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization 
[ 91%] Linking CXX executable testInchi
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testInchi.dir/test.cpp.o  -o testInchi -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib -linchi ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
[ 91%] Built target testInchi
[ 91%] Built target rdmolops
[ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SmilesMolSupplier.cpp
Scanning dependencies of target testMMFFForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
[ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SmilesWriter.cpp
[ 93%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/testMMFFForceField.cpp
Scanning dependencies of target testReaction
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/testReaction.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SmilesWriter.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
Scanning dependencies of target testEnumeration
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SDWriter.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp:378:8: warning: variable 'doLong' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    bool doLong = false;
BUILDSTDERR:         ^~~~~~
[ 93%] Linking CXX executable testMMFFForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o  -o testMMFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Built target testMMFFForceField
[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/TDTWriter.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/SDWriter.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 93%] Linking CXX executable testEnumeration
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o  -o testEnumeration -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Built target testEnumeration
[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/PDBWriter.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/TDTWriter.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testReactionFingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/PDBWriter.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemReactions
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp
[ 93%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 94%] Linking CXX executable testReactionFingerprints
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o  -o testReactionFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 94%] Built target testReactionFingerprints
[ 94%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
[ 94%] Built target rdmolfiles
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Scanning dependencies of target moldraw2DRxnTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/test1.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/rxn_test1.cpp
[ 94%] Linking CXX executable testReaction
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o  -o testReaction -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 94%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 95%] Linking CXX executable moldraw2DRxnTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o  -o moldraw2DRxnTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lcairo 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDraw2D
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[ 95%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
[ 95%] Linking CXX executable moldraw2DTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o  -o moldraw2DTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lcairo 
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[ 95%] Built target rdChemReactions
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target testFMCS
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 95%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/testFMCS_Unit.cpp
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[ 95%] Built target moldraw2DTest1
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target rdFMCS
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[ 96%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
[ 96%] Linking CXX executable testFMCS
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o  -o testFMCS -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Built target testFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCStest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 97%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test/testFMCS.cpp
[ 97%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 -lcairo ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization 
[ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 97%] Built target rdFMCS
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 97%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/testMolHash.cpp
[ 97%] Linking CXX executable FMCStest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o  -o FMCStest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 97%] Built target FMCStest
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 97%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 97%] Built target rdMolDraw2D
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 97%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
[ 98%] Linking CXX executable testMolHash
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o  -o testMolHash -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 98%] Built target testMolHash
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 98%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
[ 98%] Linking CXX executable testMMPA
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o  -o testMMPA -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 98%] Built target testMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target testStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 98%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp
[ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 98%] Built target rdMolHash
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target rdStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 98%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap/structchecker.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testLoadOptionsFromFiles()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:139:8: warning: unused variable 'ok' [-Wunused-variable]
BUILDSTDERR:    bool ok;
BUILDSTDERR:         ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testStereo()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:324:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testOptionsDefault()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:400:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtomWithDefaultGoodAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:424:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtom()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:448:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificExamples()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:603:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                      ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificOrder()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:676:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformTau()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:705:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:749:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'int main(int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, const char* argv[]) {
BUILDSTDERR:           ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:32: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, const char* argv[]) {
BUILDSTDERR:                     ~~~~~~~~~~~~^~~~~~
[ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 99%] Linking CXX executable testStructChecker
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o  -o testStructChecker -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 99%] Built target rdMMPA
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
Scanning dependencies of target testRGroupDecomp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target testStructChecker
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target rdRGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp
[100%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target rdStructChecker
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[100%] Linking CXX executable testRGroupDecomp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o  -o testRGroupDecomp -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target testRGroupDecomp
[100%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python2/lib: ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython2.7 -lboost_python -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target rdRGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target testReaction
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles 0
~/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
+ pushd Code/PgSQL/rdkit
+ chrpath -d librdkit.so
~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
~/build/BUILD/rdkit-Release_2018_03_2
+ popd
+ popd
+ pushd python3
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=ON -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -D RDK_OPTIMIZE_NATIVE:BOOL=OFF .
~/build/BUILD/rdkit-Release_2018_03_2/python3 ~/build/BUILD/rdkit-Release_2018_03_2
-- The C compiler identification is GNU 8.2.1
-- The CXX compiler identification is GNU 8.2.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Found INCHI: /usr/lib64/libinchi.so  
-- Found PythonInterp: /usr/bin/python3 (found version "3.7") 
-- Found PythonLibs: /usr/lib64/libpython3.7m.so (found version "3.7.0") 
BUILDSTDERR: Python Install directory /usr/lib64/python3.7/site-packages
BUILDSTDERR: PYTHON Py_ENABLE_SHARED: 1
BUILDSTDERR: PYTHON USING LINK LINE: -pthread -shared -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g  -flto -fuse-linker-plugin -ffat-lto-objects -flto-partition=none
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Boost version: 1.66.0
-- Found the following Boost libraries:
--   serialization
-- Found PostgreSQL: /usr/lib64/libpq.so (found version "10.3") 
BUILDSTDERR: == Using strict rotor definition
-- Found BISON: /usr/bin/bison  
-- Found FLEX: /usr/bin/flex  
BUILDSTDERR: == Updating Filters.cpp from pains file
== Done updating pains files
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.5.3") 
-- Checking for module 'cairo'
--   Found cairo, version 1.15.12
-- Found Cairo: /usr/include/cairo  
BUILDSTDERR: postgres: /usr/include;/usr/include/pgsql/server
BUILDSTDERR: =====================================================================
BUILDSTDERR: After building, check
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/pgsql_install.sh
BUILDSTDERR: for correctness of installation paths. If everything is OK, gain 
BUILDSTDERR: administrator privileges, stop the PostgreSQL service, run
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/pgsql_install.sh
BUILDSTDERR: to install the PostgreSQL RDKit cartridge, then start again
BUILDSTDERR: the PostgreSQL service
BUILDSTDERR: =====================================================================
-- Configuring done
-- Generating done
BUILDSTDERR: CMake Warning:
BUILDSTDERR:   Manually-specified variables were not used by the project:
BUILDSTDERR:     CMAKE_CXX_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_C_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_Fortran_FLAGS_RELEASE
BUILDSTDERR:     INCLUDE_INSTALL_DIR
BUILDSTDERR:     LIB_INSTALL_DIR
BUILDSTDERR:     SHARE_INSTALL_PREFIX
BUILDSTDERR:     SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3
+ make -j4
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2018_03_2/python3 -B/builddir/build/BUILD/rdkit-Release_2018_03_2/python3 --check-build-system CMakeFiles/Makefile.cmake 0
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/rdkit/Chem/inchi.py
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/hc.dir/hc.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh/hc.c
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[  2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o
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/usr/bin/cc -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2018.03.2 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2018.03.2 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/RDLog.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures && /usr/bin/c++  -DChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/FreeChemicalFeature.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/versions.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2018.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so
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make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
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Scanning dependencies of target testRDValue
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost && /usr/bin/c++  -DRDBoost_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers && /usr/bin/c++  -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/testRDValue.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/BitVect.cpp
[  3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/SparseBitVect.cpp
[  4%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  4%] Built target EigenSolvers
[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/ExplicitBitVect.cpp
[  4%] Linking CXX shared library ../../lib/libRDKitRDBoost.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2018.03.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2018.03.2 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Utils.cpp
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
Scanning dependencies of target testDict
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/testDict.cpp
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/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRDValue.dir/testRDValue.cpp.o  -o testRDValue -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/base64.cpp
[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/BitOps.cpp
Scanning dependencies of target rdBase
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap/RDBase.cpp
[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/DiscreteDistMat.cpp
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
Scanning dependencies of target testMatrices
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/testMatrices.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap/RDBase.cpp:15:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/DiscreteValueVect.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o  -o testMatrices -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
Scanning dependencies of target Catalogs
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make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs/Catalog.cpp
[  5%] Linking CXX executable testDict
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDict.dir/testDict.cpp.o  -o testDict -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/FPBReader.cpp
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[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/MultiFPBReader.cpp
[  5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs/CatalogParams.cpp
[  5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs/CatalogEntry.cpp
[  6%] Linking CXX shared library ../../lib/libRDKitCatalogs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2018.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
[  6%] Built target Catalogs
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
Scanning dependencies of target testQuery
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target testMatCalc
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
[  6%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query/test.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  7%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp
[  8%] Linking CXX shared library ../../lib/libRDKitDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2018.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so
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make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target SimDivPickers
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[  9%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/DistPicker.cpp
[  9%] Linking CXX executable testMatCalc
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o  -o testMatCalc -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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[  9%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/MaxMinPicker.cpp
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
Scanning dependencies of target Clustering
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  9%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh && /usr/bin/c++  -DClustering_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh/Clustering.cpp
[  9%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/HierarchicalClusterPicker.cpp
[  9%] Linking CXX executable testQuery
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testQuery.dir/test.cpp.o  -o testQuery -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
Scanning dependencies of target InfoTheory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory && /usr/bin/c++  -DInfoTheory_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/InfoBitRanker.cpp
[  9%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKithc.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  9%] Built target SimDivPickers
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  9%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/testChemicalFeatures.cpp
[ 10%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKithc.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 10%] Built target Clustering
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
Scanning dependencies of target RDGeometryLib
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 10%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.cpp
[ 10%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 10%] Built target InfoTheory
[ 10%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Transform2D.cpp
[ 10%] Linking CXX executable testChemicalFeatures
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o  -o testChemicalFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 10%] Built target testChemicalFeatures
[ 10%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Transform3D.cpp
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
Scanning dependencies of target testDataStructs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 11%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp
[ 12%] Linking CXX shared module ../../../rdkit/rdBase.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
Scanning dependencies of target testFPB
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 12%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testFPB.cpp
[ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/UniformGrid3D.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp: In function 'int main()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp:1398:12: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
BUILDSTDERR:    } catch (IndexErrorException) {
BUILDSTDERR:             ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp: In instantiation of 'void Test(T) [with T = SparseBitVect]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp:1417:17:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp:118:5: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
BUILDSTDERR:    } catch (IndexErrorException) {
BUILDSTDERR:      ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp: In instantiation of 'void Test(T) [with T = ExplicitBitVect]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp:1423:19:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testDatastructs.cpp:118:5: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
[ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/GridUtils.cpp
[ 13%] Linking CXX executable testFPB
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o  -o testFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 14%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 14%] Built target rdBase
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
Scanning dependencies of target testMultiFPB
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 14%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/testMultiFPB.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 14%] Built target RDGeometryLib
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target cDataStructs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
[ 14%] Built target testFPB
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/DataStructs.cpp
Scanning dependencies of target testTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 15%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/testTransforms.cpp
[ 15%] Linking CXX executable testDataStructs
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o  -o testDataStructs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 15%] Linking CXX executable testTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o  -o testTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 15%] Built target testTransforms
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
Scanning dependencies of target testGrid
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 15%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/testGrid.cpp
[ 15%] Linking CXX executable testMultiFPB
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o  -o testMultiFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 15%] Built target testDataStructs
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/DiscreteValueVect.cpp
Scanning dependencies of target rdGeometry
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap/Point.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Built target testMultiFPB
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/SparseIntVect.cpp
[ 16%] Linking CXX executable testGrid
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o  -o testGrid -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
[ 16%] Built target testGrid
Scanning dependencies of target Alignment
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/wrap_SparseBV.cpp
[ 16%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap/UniformGrid3D.cpp
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment && /usr/bin/c++  -DAlignment_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/AlignPoints.cpp
Scanning dependencies of target Optimizer
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/c++  -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/BFGSOpt.cpp
[ 16%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/c++  -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/LinearSearch.cpp
[ 16%] Linking CXX shared library ../../../lib/libRDKitAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2018.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Built target Alignment
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMetricMatrixCalc
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
[ 16%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2018.03.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Built target Optimizer
[ 16%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap/rdGeometry.cpp
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target testSimDivPickers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/testPickers.cpp
[ 16%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 17%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 17%] Built target rdGeometry
[ 17%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/wrap_BitOps.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 17%] Built target rdMetricMatrixCalc
[ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/wrap_FPB.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 19%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
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[ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o
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make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/testAlignment.cpp
[ 20%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSimDivPickers.so.1.2018.03.2 ../../../lib/libRDKithc.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryAtom.cpp
Scanning dependencies of target rdAlignment
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap/rdAlignment.cpp
[ 20%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitInfoTheory.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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Scanning dependencies of target testOptimizer
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[ 20%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/testOptimizer.cpp
[ 20%] Linking CXX executable testAlignment
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o  -o testAlignment -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryBond.cpp
[ 20%] Linking CXX executable testOptimizer
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o  -o testOptimizer -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Bond.cpp
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target ForceField
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make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 21%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/ForceField.cpp
[ 21%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/AngleBend.cpp
[ 21%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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[ 21%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/BondStretch.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolOps.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FindRings.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ROMol.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/Nonbonded.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/Inversion.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/TorsionAngle.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RWMol.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/AngleConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PeriodicTable.cpp
[ 22%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/DistanceConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/TorsionConstraint.cpp
[ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/atomic_data.cpp
[ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/PositionConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/Params.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolPickler.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Canon.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/BondStretch.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/AngleBend.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/StretchBend.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/OopBend.cpp
[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/AtomIterators.cpp
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/TorsionAngle.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/Nonbonded.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/BondIterators.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/DistanceConstraint.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Aromaticity.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Kekulize.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/AngleConstraint.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/TorsionConstraint.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/PositionConstraint.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDiscriminators.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/Params.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ConjugHybrid.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/AddHs.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/Params.cpp: In constructor 'ForceFields::MMFF::MMFFAromCollection::MMFFAromCollection(const uint8_t*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/Params.cpp:50:49: warning: division 'sizeof (const uint8_t* {aka const unsigned char*}) / sizeof (const uint8_t {aka const unsigned char})' does not compute the number of array elements [-Wsizeof-pointer-div]
BUILDSTDERR:    for (unsigned int i = 0; i < sizeof(mmffArom) / sizeof(mmffArom[0]); ++i) {
BUILDSTDERR:                                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/Params.cpp:46:62: note: first 'sizeof' operand was declared here
BUILDSTDERR:  MMFFAromCollection::MMFFAromCollection(const boost::uint8_t *mmffArom) {
BUILDSTDERR:                                         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/AddHs.cpp: In function 'bool RDKit::MolOps::{anonymous}::adjustStereoAtomsIfRequired(RDKit::RWMol&, const RDKit::Atom*, const RDKit::Atom*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/AddHs.cpp:497:9: warning: unused variable 'dblBond' [-Wunused-variable]
BUILDSTDERR:    Bond *dblBond = nullptr;
BUILDSTDERR:          ^~~~~~~
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Matrices.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Chirality.cpp
[ 28%] Linking CXX shared library ../../lib/libRDKitForceField.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2018.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Chirality.cpp: In function 'bool RDKit::MolOps::{anonymous}::isBondCandidateForStereo(const RDKit::Bond*, const RDKit::ROMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Chirality.cpp:1737:62: warning: unused parameter 'mol' [-Wunused-parameter]
BUILDSTDERR:  bool isBondCandidateForStereo(const Bond *bond, const ROMol &mol) {
BUILDSTDERR:                                                  ~~~~~~~~~~~~~^~~
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target ForceField
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RingInfo.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Conformer.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Renumber.cpp
[ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/AdjustQuery.cpp
[ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Resonance.cpp
[ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/new_canon.cpp
[ 29%] Linking CXX shared library ../../lib/libRDKitGraphMol.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2018.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 29%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
[ 29%] [FLEX][SmartsL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmarts_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp smarts.ll
Scanning dependencies of target MolTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target SubstructMatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
Scanning dependencies of target Subgraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 29%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms && /usr/bin/c++  -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/MolTransforms.cpp
[ 29%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/Subgraphs.cpp
[ 30%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
[ 30%] [BISON][SmilesY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/SubstructMatch.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/smiles.tab.cpp smiles.yy
[ 30%] [BISON][SmartsY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -pyysmarts_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/smarts.tab.cpp smarts.yy
BUILDSTDERR: smarts.yy: warning: 108 shift/reduce conflicts [-Wconflicts-sr]
[ 31%] [FLEX][SmilesL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmiles_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp smiles.ll
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SmilesParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/SmilesParse.cpp
[ 31%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/SubgraphUtils.cpp
[ 32%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 32%] Built target MolTransforms
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target PartialCharges
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 32%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/c++  -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/GasteigerCharges.cpp
[ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
[ 32%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 32%] Built target Subgraphs
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
[ 32%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/SubstructUtils.cpp
Scanning dependencies of target rdMolTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 32%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp
[ 33%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/c++  -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/GasteigerParams.cpp
[ 33%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/SmilesWrite.cpp
[ 33%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 33%] Built target SubstructMatch
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 33%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
[ 33%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 33%] Built target PartialCharges
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target MolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 33%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/c++  -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
[ 33%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
[ 34%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target rdMolTransforms
[ 35%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/c++  -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/SmartsWrite.cpp
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target MolCatalog
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/smiles.tab.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target ShapeHelpers
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
Scanning dependencies of target Trajectory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/Trajectory.cpp
BUILDSTDERR: smiles.yy: In function 'void yysmiles_error(const char*, std::vector<RDKit::RWMol*>*, std::__cxx11::list<unsigned int>*, void*, const char*)':
BUILDSTDERR: smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter]
BUILDSTDERR:  yysmiles_error( const char *input,
BUILDSTDERR:                  ~~~~~~~~~~~~^~~~~
BUILDSTDERR: smiles.yy:40:42: warning: unused parameter 'branchPoints' [-Wunused-parameter]
BUILDSTDERR:                  std::list<unsigned int> *branchPoints,
BUILDSTDERR:                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
BUILDSTDERR: smiles.yy:41:9: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR:    void *scanner,const char * msg )
BUILDSTDERR:    ~~~~~~^~~~~~~
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/smarts.tab.cpp
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] [FLEX][SlnL] Building scanner with flex 2.6.1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/flex -Pyysln_ -o/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/lex.yysln.cpp sln.ll
[ 36%] [BISON][SlnY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/bison -pyysln_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/sln.tab.cpp sln.yy
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/SLNParse.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2018.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target Trajectory
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
BUILDSTDERR: smarts.yy: In function 'void yysmarts_error(const char*, std::vector<RDKit::RWMol*>*, void*, const char*)':
BUILDSTDERR: smarts.yy:24:29: warning: unused parameter 'input' [-Wunused-parameter]
BUILDSTDERR:  yysmarts_error( const char *input,
BUILDSTDERR:                  ~~~~~~~~~~~~^~~~~
BUILDSTDERR: smarts.yy:25:46: warning: unused parameter 'ms' [-Wunused-parameter]
BUILDSTDERR:                  std::vector<RDKit::RWMol *> *ms,
BUILDSTDERR:                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
BUILDSTDERR: smarts.yy:26:9: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR:    void *scanner,const char * msg )
BUILDSTDERR:    ~~~~~~^~~~~~~
[ 36%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/SLNAttribs.cpp
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
Scanning dependencies of target rdqueries
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/rdqueries.cpp
[ 37%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 37%] Built target SmilesParse
[ 37%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Queries.cpp
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
[ 37%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/lex.yysln.cpp
[ 38%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/sln.tab.cpp
Scanning dependencies of target rdtrajectory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 39%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Trajectory.cpp
BUILDSTDERR: sln.yy:54: warning: "YYDEBUG" redefined
BUILDSTDERR:  #define YYDEBUG 1
BUILDSTDERR:  
BUILDSTDERR: In file included from sln.yy:50:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/sln.tab.hpp:37: note: this is the location of the previous definition
BUILDSTDERR:  # define YYDEBUG 0
BUILDSTDERR:  
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryAtom.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RDKitQueries.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Queries.cpp:15:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:820:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = bool]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:820:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = bool]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: sln.yy: In function 'void yysln_error(const char*, std::vector<RDKit::RWMol*>*, bool, void*, const char*)':
BUILDSTDERR: sln.yy:58:43: warning: unused parameter 'ms' [-Wunused-parameter]
BUILDSTDERR:               std::vector<RDKit::RWMol *> *ms,bool doQ,
BUILDSTDERR:               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
BUILDSTDERR: sln.yy:58:51: warning: unused parameter 'doQ' [-Wunused-parameter]
BUILDSTDERR:               std::vector<RDKit::RWMol *> *ms,bool doQ,
BUILDSTDERR:                                               ~~~~~^~~
BUILDSTDERR: sln.yy:59:13: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR:        void *scanner,const char * msg )
BUILDSTDERR:        ~~~~~~^~~~~~~
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 39%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp
[ 39%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 39%] Built target SLNParse
[ 39%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/rdTrajectory.cpp
[ 39%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp
[ 39%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
Scanning dependencies of target Depictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 39%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/RDDepictor.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 39%] Built target rdqueries
[ 39%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp
[ 39%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoords(RDKit::ROMol&, const INT_POINT2D_MAP*, bool, bool, unsigned int, unsigned int, int, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/RDDepictor.cpp:310:58: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
BUILDSTDERR:                               bool permuteDeg4Nodes, bool forceRDKit) {
BUILDSTDERR:                                                      ~~~~~^~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoordsMimicDistMat(RDKit::ROMol&, const DOUBLE_SMART_PTR*, bool, bool, double, unsigned int, unsigned int, int, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/RDDepictor.cpp:421:10: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
BUILDSTDERR:      bool forceRDKit) {
BUILDSTDERR:      ~~~~~^~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 39%] Built target rdtrajectory
[ 39%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/DepictUtils.cpp
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 39%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
[ 40%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Built target rdChemicalFeatures
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target MolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/c++  -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/AlignMolecules.cpp
[ 40%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/c++  -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
[ 40%] Linking CXX shared library ../../../lib/libRDKitDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.03.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 40%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
[ 40%] Built target Depictor
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMemTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target graphmoltestCanon
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/memtest1.cpp
[ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testCanon.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testCanon.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testCanon.cpp:180:18: warning: catching polymorphic type 'class RDKit::MolSanitizeException' by value [-Wcatch-value=]
BUILDSTDERR:          } catch (MolSanitizeException) {
BUILDSTDERR:                   ^~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
[ 41%] Linking CXX executable graphmoltestCanon
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o  -o graphmoltestCanon -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
Scanning dependencies of target test-valgrind
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/test-valgrind.cpp
[ 41%] Linking CXX executable graphmolMemTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o  -o graphmolMemTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolqueryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/querytest.cpp
[ 41%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Built target MolAlign
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolIterTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 42%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/itertest.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp: In member function 'void RDKit::MMFF::MMFFMolProperties::setMMFFHydrogenType(const RDKit::Atom*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2343:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              if (isHOS) {
BUILDSTDERR:              ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2350:11: note: here
BUILDSTDERR:            default:
BUILDSTDERR:            ^~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryAtom.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RDKitQueries.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/querytest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:820:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:820:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:826:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:828:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:756:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:762:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (KeyErrorException e) {
BUILDSTDERR:          ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/QueryOps.h:764:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:        } catch (boost::bad_any_cast) {
BUILDSTDERR:          ^~~~~
[ 43%] Linking CXX executable test-valgrind
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o  -o test-valgrind -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolcpTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/cptest.cpp
[ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
[ 43%] Linking CXX executable graphmolIterTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o  -o graphmolIterTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target graphmolIterTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
[ 44%] Linking CXX executable graphmolqueryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o  -o graphmolqueryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 44%] Linking CXX executable graphmolcpTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o  -o graphmolcpTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target graphmolcpTest
[ 44%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target graphmolqueryTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smaTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/smatest.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp: In function 'void RDKit::MolFragmenter::{anonymous}::checkChiralityPostMove(const RDKit::ROMol&, const RDKit::Atom*, RDKit::Atom*, const RDKit::Bond*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:367:16: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
BUILDSTDERR:        if (bidx != bond->getIdx()) {
BUILDSTDERR:            ~~~~~^~~~~~~~~~~~~~~~~
[ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
[ 45%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target FilterCatalog
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 46%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Filters.cpp
[ 46%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 46%] Built target ChemTransforms
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/Fingerprints.cpp
[ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
[ 47%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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[ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs1
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 47%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/test1.cpp
[ 48%] Linking CXX executable smaTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o  -o smaTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 48%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
[ 48%] Linking CXX executable testSubgraphs1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o  -o testSubgraphs1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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[ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
[ 48%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 48%] Built target smaTest1
[ 48%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
[ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/AtomPairs.cpp
[ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/MACCS.cpp
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs2
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 48%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/test2.cpp
[ 48%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 48%] Built target FilterCatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target FragCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 48%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target testPartialCharges
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 49%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/test1.cpp
[ 49%] Linking CXX executable testSubgraphs2
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o  -o testSubgraphs2 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 49%] Built target testSubgraphs2
[ 49%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
[ 49%] Linking CXX executable testPartialCharges
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o  -o testPartialCharges -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 49%] Built target testPartialCharges
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target rdPartialCharges
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 49%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
[ 50%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 50%] Built target Fingerprints
[ 50%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceFieldHelpers
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 50%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
[ 50%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
[ 51%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/FragCatParams.cpp
Scanning dependencies of target MolChemicalFeatures
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdShapeHelpers
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 51%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
[ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
[ 51%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
[ 51%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 51%] Built target rdForceFieldHelpers
[ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
[ 52%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Conformer.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ROMol.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h: In function 'boost::python::tuple RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                      ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                                  ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                      ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                                  ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                      ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                                  ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                      ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:                                                  ~~~~~~^
[ 52%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
[ 52%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target ReducedGraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 52%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 52%] Built target rdShapeHelpers
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target SubstructLibrary
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 52%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 52%] Built target FragCatalog
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target testSLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 52%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/test.cpp
[ 52%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 52%] Built target MolChemicalFeatures
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 52%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
[ 53%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 53%] Built target ReducedGraphs
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
Scanning dependencies of target rdchem
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/rdchem.cpp
[ 53%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 53%] Built target SubstructLibrary
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
Scanning dependencies of target RDInchiLib
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 53%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDInchiLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/inchi.cpp
[ 53%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 53%] Built target rdSLNParse
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
Scanning dependencies of target FileParsers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/Mol2FileParser.cpp
[ 53%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDInchiLib.so.1 -o ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 CMakeFiles/RDInchiLib.dir/inchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: -linchi ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 53%] Built target RDInchiLib
[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileParser.cpp
[ 53%] Linking CXX executable testSLNParse
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSLNParse.dir/test.cpp.o  -o testSLNParse -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitSLNParse.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileParser.cpp: In function 'RDKit::Bond* RDKit::{anonymous}::ParseMolFileBondLine(const string&, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileParser.cpp:1408:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:      } catch (boost::bad_lexical_cast) {
BUILDSTDERR:                      ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileParser.cpp:1436:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:      } catch (boost::bad_lexical_cast) {
BUILDSTDERR:                      ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileParser.cpp:1444:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:      } catch (boost::bad_lexical_cast) {
BUILDSTDERR:                      ^~~~~~~~~~~~~~~~
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
[ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Table.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Table.cpp
Scanning dependencies of target DistGeometry
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/DistGeomUtils.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 54%] Built target testSLNParse
[ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileStereochem.cpp
[ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/TriangleSmooth.cpp
[ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/DistViolationContrib.cpp
[ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/ChiralViolationContrib.cpp
[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp
[ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Atom.cpp
[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
[ 55%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 55%] Built target DistGeometry
[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SDMolSupplier.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp: In function 'std::__cxx11::string RDKit::MolToMolBlock(const RDKit::ROMol&, bool, int, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp:1196:12: warning: catching polymorphic type 'class RDKit::{anonymous}::RequiresV3000Exception' by value [-Wcatch-value=]
BUILDSTDERR:    } catch (RequiresV3000Exception) {
BUILDSTDERR:             ^~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Bond.cpp
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 56%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap/ForceField.cpp
[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SDWriter.cpp
[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SmilesWriter.cpp
[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
[ 57%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 57%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
[ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Mol.cpp
[ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/Conformer.cpp
Scanning dependencies of target testDistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
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[ 57%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/testDistGeom.cpp
[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTWriter.cpp
[ 57%] Linking CXX executable testDistGeom
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o  -o testDistGeom -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/RingInfo.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/types.h:26,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/MolWriters.h:14,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTWriter.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTWriter.cpp: In destructor 'virtual RDKit::TDTWriter::~TDTWriter()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:104:11: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:      throw inv;                                                         \
BUILDSTDERR:            ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
BUILDSTDERR:      CHECK_INVARIANT(dp_ostream,
BUILDSTDERR:      ^~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:104:11: note: in C++11 destructors default to noexcept
BUILDSTDERR:      throw inv;                                                         \
BUILDSTDERR:            ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
BUILDSTDERR:      CHECK_INVARIANT(dp_ostream,
BUILDSTDERR:      ^~~~~~~~~~~~~~~
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 58%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap && /usr/bin/c++  -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap/DistGeom.cpp
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TplFileParser.cpp
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 58%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
[ 58%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 58%] Built target DistGeom
[ 59%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
[ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/TplFileWriter.cpp
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target testReducedGraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 59%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/test1.cpp
[ 59%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/EditableMol.cpp
[ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBParser.cpp
[ 59%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBParser.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
BUILDSTDERR:  static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
BUILDSTDERR:                      ^~~~~~~~~~~~
[ 59%] Linking CXX executable testReducedGraphs
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o  -o testReducedGraphs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 59%] Built target testReducedGraphs
[ 59%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RDKitBase.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/EditableMol.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/EditableMol.cpp: In destructor 'RDKit::{anonymous}::EditableMol::~EditableMol()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:112:11: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:      throw inv;                                                             \
BUILDSTDERR:            ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:112:11: note: in definition of macro 'PRECONDITION'
BUILDSTDERR:      throw inv;                                                             \
BUILDSTDERR:            ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:112:11: note: in C++11 destructors default to noexcept
BUILDSTDERR:      throw inv;                                                             \
BUILDSTDERR:            ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/Invariant.h:112:11: note: in definition of macro 'PRECONDITION'
BUILDSTDERR:      throw inv;                                                             \
BUILDSTDERR:            ^~~
[ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp
[ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/MonomerInfo.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp: In function 'std::__cxx11::string RDKit::GetPDBBondLines(const RDKit::Atom*, bool, bool, bool, unsigned int&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:163:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          v.push_back(dst);
BUILDSTDERR:          ~~~~~~~~~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:164:7: note: here
BUILDSTDERR:        case Bond::TRIPLE:
BUILDSTDERR:        ^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:165:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          v.push_back(dst);
BUILDSTDERR:          ~~~~~~~~~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:166:7: note: here
BUILDSTDERR:        case Bond::DOUBLE:
BUILDSTDERR:        ^~~~
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target rdReducedGraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 60%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
[ 60%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 60%] Built target rdMolChemicalFeatures
[ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/PDBSupplier.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/ProximityBonds.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SequenceParsers.cpp
[ 62%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitReducedGraphs.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/ProximityBonds.cpp:10:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
BUILDSTDERR:  static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
BUILDSTDERR:                      ^~~~~~~~~~~~
[ 62%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/MolBundle.cpp
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
[ 62%] Built target rdReducedGraphs
Scanning dependencies of target rdinchi
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[ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/SequenceWriters.cpp
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
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[ 62%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap/pyInchi.cpp
Scanning dependencies of target DistGeomHelpers
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[ 62%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
[ 62%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.03.2 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 62%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp
[ 62%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 62%] Built target rdinchi
[ 62%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 62%] Built target FileParsers
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target Descriptors
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/testUFFForceField.cpp
[ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Crippen.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Crippen.cpp: In constructor 'RDKit::Descriptors::CrippenParamCollection::CrippenParamCollection(const string&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Crippen.cpp:171:25: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:          } catch (boost::bad_lexical_cast) {
BUILDSTDERR:                          ^~~~~~~~~~~~~~~~
[ 63%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/MolDescriptors.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target rdchem
[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/MolSurf.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target DistGeomHelpers
[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Lipinski.cpp
[ 64%] Linking CXX executable testUFFForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o  -o testUFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
[ 64%] Built target testUFFForceField
[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp
Scanning dependencies of target graphmolMolOpsTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
[ 64%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/molopstest.cpp
Scanning dependencies of target graphmolTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/test1.cpp
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestChirality
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testChirality.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/molopstest.cpp: In function 'void testRenumberAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/molopstest.cpp:4693:12: warning: unused variable 'nm' [-Wunused-variable]
BUILDSTDERR:      ROMol *nm = MolOps::renumberAtoms(*m, nVect);
BUILDSTDERR:             ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/molopstest.cpp: In function 'void testGithub1281()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/molopstest.cpp:6940:16: warning: unused variable 'm' [-Wunused-variable]
BUILDSTDERR:          RWMol *m = SmilesToMol(smiles);
BUILDSTDERR:                 ^
[ 65%] Linking CXX executable graphmolTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o  -o graphmolTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../lib/libRDKitForceField.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
[ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/MQN.cpp
Scanning dependencies of target graphmoltestPickler
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testPickler.cpp
[ 65%] Linking CXX executable graphmoltestChirality
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o  -o graphmoltestChirality -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Property.cpp
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/AUTOCORR2D.cpp
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp
[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp
[ 67%] Linking CXX executable graphmoltestPickler
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o  -o graphmoltestPickler -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molBundleTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testMolBundle.cpp
[ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/USRDescriptor.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
Scanning dependencies of target resMolSupplierTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/resMolSupplierTest.cpp
[ 67%] Linking CXX executable molBundleTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o  -o molBundleTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPicklerGlobalSetting
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testPicklerGlobalSettings.cpp
[ 67%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2018.03.2 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testPicklerGlobalSettings.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testPicklerGlobalSettings.cpp:256:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:           ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/testPicklerGlobalSettings.cpp:256:26: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:                     ~~~~~~^~~~~~
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
[ 67%] Linking CXX executable resMolSupplierTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target Descriptors
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o  -o resMolSupplierTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
Scanning dependencies of target hanoiTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/hanoitest.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target resMolSupplierTest
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target testDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/testDepictor.cpp
[ 67%] Linking CXX executable graphmolMolOpsTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o  -o graphmolMolOpsTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 67%] Linking CXX executable graphmoltestPicklerGlobalSetting
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o  -o graphmoltestPicklerGlobalSetting -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
[ 67%] Linking CXX executable testDepictor
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o  -o testDepictor -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target testDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smiTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/test.cpp
[ 67%] Linking CXX executable hanoiTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o  -o hanoiTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'void RDDepict::setPreferCoordGen(bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:131:29: warning: unused parameter 'value' [-Wunused-parameter]
BUILDSTDERR:  void setPreferCoordGen(bool value) {
BUILDSTDERR:                         ~~~~~^~~~~
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[ 67%] Built target hanoiTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
Scanning dependencies of target cxsmilesTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/cxsmiles_test.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/test.cpp: In function 'void testFail()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/test.cpp:167:14: warning: catching polymorphic type 'class RDKit::MolSanitizeException' by value [-Wcatch-value=]
BUILDSTDERR:      } catch (MolSanitizeException) {
BUILDSTDERR:               ^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'unsigned int RDDepict::Compute2DCoords(RDKit::ROMol&, bool, bool, boost::python::dict&, unsigned int, unsigned int, int, bool, double, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:49:61: warning: '*((void*)&<anonymous> +40)' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      cMap[id] = python::extract<RDGeom::Point2D>(coordMap[id]);
BUILDSTDERR:                                                              ^
[ 67%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target rdDepictor
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
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[ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/testSequence.cpp
[ 68%] Linking CXX executable testSequence
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o  -o testSequence -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target fileParsersTest1
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[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/test1.cpp
[ 69%] Linking CXX executable cxsmilesTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o  -o cxsmilesTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
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[ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/testMolSupplier.cpp
[ 69%] Linking CXX executable testMolSupplier
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o  -o testMolSupplier -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 69%] Linking CXX executable smiTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o  -o smiTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 69%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolWriter
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/testMolWriter.cpp
[ 70%] Linking CXX executable testMolWriter
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o  -o testMolWriter -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 70%] Linking CXX executable fileParsersTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o  -o fileParsersTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
Scanning dependencies of target testTplParser
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/testTpls.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Built target smiTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
Scanning dependencies of target testMol2ToMol
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/testMol2ToMol.cpp
[ 70%] Linking CXX executable testTplParser
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o  -o testTplParser -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Built target testTplParser
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubstructMatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/test1.cpp
[ 72%] Linking CXX executable testMol2ToMol
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o  -o testMol2ToMol -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 72%] Built target testMol2ToMol
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemReactions
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Reaction.cpp
[ 72%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/MDLParser.cpp
[ 72%] Linking CXX executable testSubstructMatch
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o  -o testSubstructMatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 72%] Built target testSubstructMatch
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 73%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
[ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/DaylightParser.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 73%] Built target graphmolMolOpsTest
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
Scanning dependencies of target filterCatalogTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 73%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
[ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionPickler.cpp
[ 73%] Linking CXX executable filterCatalogTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o  -o filterCatalogTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 73%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfiltercatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 73%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
[ 73%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionWriter.cpp
[ 73%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
[ 73%] Linking CXX executable testChemTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o  -o testChemTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 74%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionDepict.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 74%] Built target fileParsersTest1
[ 74%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
[ 74%] Built target testChemTransforms
[ 74%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionUtils.cpp
Scanning dependencies of target testFragCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 75%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/test1.cpp
[ 75%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/MoleculeParser.cpp
[ 75%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/ReactionRunner.cpp
[ 76%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/PreprocessRxn.cpp
[ 76%] Linking CXX executable testFragCatalog
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o  -o testFragCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 76%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfragcatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
[ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
[ 76%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
[ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp
[ 76%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp
[ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 77%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
[ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
[ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
[ 78%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp
Scanning dependencies of target testDescriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/test.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Built target rdfiltercatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
Scanning dependencies of target testAUTOCORR2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp
[ 78%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2018.03.2 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/test.cpp: In function 'void testProperties()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/test.cpp:1912:14: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:      } catch (KeyErrorException) {
BUILDSTDERR:               ^~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/test.cpp: In function 'void testStereoCounting()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/test.cpp:1960:12: warning: catching polymorphic type 'class ValueErrorException' by value [-Wcatch-value=]
BUILDSTDERR:    } catch (ValueErrorException) {
BUILDSTDERR:             ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:           ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:26: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:                     ~~~~~~^~~~~~
[ 78%] Linking CXX executable testAUTOCORR2D
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o  -o testAUTOCORR2D -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Built target ChemReactions
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
[ 78%] Built target testAUTOCORR2D
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDescriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
Scanning dependencies of target testFingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp
[ 78%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/test1.cpp
[ 78%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitFragCatalog.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Built target rdfragcatalog
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/test1.cpp
[ 78%] Linking CXX executable testMolTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o  -o testMolTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Built target testMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
[ 79%] Linking CXX executable testDescriptors
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o  -o testDescriptors -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Conformer.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ROMol.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/GraphMol.h:18,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributions(boost::python::api::object, boost::python::api::object)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      x = other.x;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      y = other.y;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:86:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      z = other.z;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      x = other.x;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      y = other.y;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:86:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      z = other.z;
BUILDSTDERR:          ~~~~~~^
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Built target testDescriptors
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
[ 79%] Linking CXX executable testMMFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o  -o testMMFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testCrystalForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
[ 79%] Linking CXX executable testFingerprints
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o  -o testFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 79%] Linking CXX executable testCrystalForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o  -o testCrystalForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Built target testCrystalForceField
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeomHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
[ 79%] Linking CXX executable testUFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o  -o testUFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++  -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Built target testFingerprints
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/testMolAlign.cpp
[ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 81%] Linking CXX executable testDistGeomHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o  -o testDistGeomHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target rdMolDescriptors
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Conformer.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ROMol.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/GraphMol.h:18,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h: In function 'RDKit::INT_VECT RDKit::EmbedMultipleConfs(RDKit::ROMol&, unsigned int, unsigned int, int, bool, bool, double, bool, unsigned int, double, boost::python::dict&, double, bool, bool, int, bool, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      x = other.x;
BUILDSTDERR:          ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h: In function 'int RDKit::EmbedMolecule(RDKit::ROMol&, unsigned int, int, bool, bool, double, bool, unsigned int, boost::python::dict&, double, bool, bool, bool, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      x = other.x;
BUILDSTDERR:          ~~~~~~^
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target testDistGeomHelpers
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
[ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target rdDistGeom
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
[ 81%] Linking CXX executable testMolAlign
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o  -o testMolAlign -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target testMolAlign
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/test1.cpp
[ 81%] Linking CXX executable testShapeHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o  -o testShapeHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitShapeHelpers.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target testShapeHelpers
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
[ 81%] Linking CXX executable testFeatures
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o  -o testFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target testFeatures
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target MolDraw2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
[ 81%] Linking CXX executable testMolCatalog
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o  -o testMolCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target testMolCatalog
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/FMCS.cpp
[ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target rdMolAlign
[ 81%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Seed.cpp
[ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolCatalog.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target rdMolCatalog
[ 81%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
[ 81%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
[ 81%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
[ 81%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp
[ 81%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
[ 82%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
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Scanning dependencies of target MolHash
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 82%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/c++  -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/MolHash.cpp
Scanning dependencies of target MMPA
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA && /usr/bin/c++  -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/MMPA.cpp
[ 83%] Linking CXX shared library ../../../lib/libRDKitFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2018.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 83%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization -lcairo 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
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[ 83%] Built target FMCS
[ 83%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/c++  -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/HashToString.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Built target MolDraw2D
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target StructChecker
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructChecker.cpp
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target trajectoryTest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/trajectoryTest.cpp
[ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp
[ 83%] Linking CXX shared library ../../../lib/libRDKitMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.03.2 CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Built target MMPA
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target substructLibraryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
[ 83%] Linking CXX shared library ../../../lib/libRDKitMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2018.03.2 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 83%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Built target MolHash
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSubstructLibrary
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::parseOptionsJSON(const string&, RDKit::StructureCheck::StructCheckerOptions&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:33:19: warning: unused variable 'iss' [-Wunused-variable]
BUILDSTDERR:      std::istream &iss = ss;
BUILDSTDERR:                    ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:356:12: warning: unused variable 'k' [-Wunused-variable]
BUILDSTDERR:    unsigned k = fscanf(fp, "%d", &n);
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::loadChargeDataTables(const string&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:665:46: warning: unused parameter 'path' [-Wunused-parameter]
BUILDSTDERR:  bool loadChargeDataTables(const std::string &path) {
BUILDSTDERR:                            ~~~~~~~~~~~~~~~~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:           ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:26: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:                     ~~~~~~^~~~~~
[ 84%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
[ 85%] Linking CXX executable trajectoryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o  -o trajectoryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitTrajectory.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 85%] Built target trajectoryTest
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target RGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 85%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp
[ 85%] Linking CXX executable substructLibraryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o  -o substructLibraryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 85%] Built target substructLibraryTest
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolops
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/rdmolops.cpp
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StructureFlags.cpp
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Utilites.cpp
[ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/MolOps.cpp
[ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Pattern.cpp
[ 87%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/MolOps.cpp:30:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so
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[ 87%] Built target RGroupDecomposition
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolfiles
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[ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/rdmolfiles.cpp
[ 87%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitSubstructLibrary.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp
[ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Stereo.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::Atom3Parity(RDKit::StructureCheck::stereo_bond_t*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Stereo.cpp:371:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else]
BUILDSTDERR:      if (ligands[i].direction != RDKit::Bond::NONE)
BUILDSTDERR:         ^
[ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp
[ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/StripSmallFragments.cpp
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
[ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SDMolSupplier.cpp
Scanning dependencies of target rdkit
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 87%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp
[ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/ReCharge.cpp
[ 87%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 -lcairo ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization 
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'double calcSparseStringDiceSml(const char*, unsigned int, const char*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:982:71: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  extern "C" double calcSparseStringDiceSml(const char *a, unsigned int sza,
BUILDSTDERR:                                                           ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:983:71: warning: unused parameter 'szb' [-Wunused-parameter]
BUILDSTDERR:                                            const char *b, unsigned int szb) {
BUILDSTDERR:                                                           ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsGT(const char*, unsigned int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1095:71: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  extern "C" bool calcSparseStringAllValsGT(const char *a, unsigned int sza,
BUILDSTDERR:                                                           ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsLT(const char*, unsigned int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1133:71: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  extern "C" bool calcSparseStringAllValsLT(const char *a, unsigned int sza,
BUILDSTDERR:                                                           ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1434:38: warning: unused parameter 'data' [-Wunused-parameter]
BUILDSTDERR:  extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
BUILDSTDERR:                                ~~~~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1434:49: warning: unused parameter 'isQuery' [-Wunused-parameter]
BUILDSTDERR:  extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
BUILDSTDERR:                                             ~~~~~^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1435:44: warning: unused parameter 'bitFlags' [-Wunused-parameter]
BUILDSTDERR:                                unsigned int bitFlags) {
BUILDSTDERR:                                ~~~~~~~~~~~~~^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1874:21: warning: unused variable 'fp' [-Wunused-variable]
BUILDSTDERR:      FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
BUILDSTDERR:                      ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1896:21: warning: unused variable 'fp' [-Wunused-variable]
BUILDSTDERR:      FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
BUILDSTDERR:                      ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'char* findMCSsmiles(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/adapter.cpp:1941:12: warning: unused variable 'nmols' [-Wunused-variable]
BUILDSTDERR:    int len, nmols = 0;
BUILDSTDERR:             ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'bool RDKit::StructureCheck::ChargeFix::setpKaValues()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/ReCharge.cpp:166:24: warning: variable 'AAp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    const AugmentedAtom *AAp;
BUILDSTDERR:                         ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'int RDKit::StructureCheck::ChargeFix::markMostAcidicAtoms(double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/ReCharge.cpp:405:17: warning: unused variable 'atom' [-Wunused-variable]
BUILDSTDERR:      const Atom &atom = *Mol.getAtomWithIdx(i);
BUILDSTDERR:                  ^~~~
[ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Tautomer.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 87%] Built target rdmolops
[ 87%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bfp_op.c
[ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/TDTMolSupplier.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Tautomer.cpp: In member function 'bool RDKit::StructureCheck::StructCheckTautomer::applyTautomer(unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Tautomer.cpp:61:12: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
BUILDSTDERR:      if (-1 == ti || -1 == tj) continue;
BUILDSTDERR:          ~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Tautomer.cpp:61:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
BUILDSTDERR:      if (-1 == ti || -1 == tj) continue;
BUILDSTDERR:                      ~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Tautomer.cpp:36:18: warning: unused variable 'ntb' [-Wunused-variable]
BUILDSTDERR:    const unsigned ntb = toTautomer.getNumBonds();
BUILDSTDERR:                   ^~~
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
Scanning dependencies of target testInchi
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 87%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/test.cpp
[ 88%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.03.2 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 88%] Built target StructChecker
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
[ 89%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/cache.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/cache.c
Scanning dependencies of target testMMFFForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 90%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/testMMFFForceField.cpp
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/guc.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/guc.c
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/low_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/low_gist.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration]
BUILDSTDERR:    fcinfo->flinfo->fn_extra = searchSfpCache(
BUILDSTDERR:                               ^~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to 'void *' from 'int' makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:    fcinfo->flinfo->fn_extra = searchSfpCache(
BUILDSTDERR:                             ^
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/mol_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:34:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition':
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:33:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:484:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
BUILDSTDERR:      PG_RETURN_INT32((int32)lst);
BUILDSTDERR:                      ^
BUILDSTDERR: /usr/include/pgsql/server/postgres.h:386:39: note: in definition of macro 'SET_4_BYTES'
BUILDSTDERR:  #define SET_4_BYTES(value) (((Datum) (value)) & 0xffffffff)
BUILDSTDERR:                                        ^~~~~
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:314:36: note: in expansion of macro 'Int32GetDatum'
BUILDSTDERR:  #define PG_RETURN_INT32(x)  return Int32GetDatum(x)
BUILDSTDERR:                                     ^~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:484:5: note: in expansion of macro 'PG_RETURN_INT32'
BUILDSTDERR:      PG_RETURN_INT32((int32)lst);
BUILDSTDERR:      ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:34:
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:233:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR:  }
BUILDSTDERR:  ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR:  }
BUILDSTDERR:  ^
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rdkit_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit declaration of function 'floor' [-Wimplicit-function-declaration]
BUILDSTDERR:    return (int) floor(10000*soergeldistsign(a, b));
BUILDSTDERR:                 ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible implicit declaration of built-in function 'floor'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: note: include '<math.h>' or provide a declaration of 'floor'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:42:1:
BUILDSTDERR: +#include <math.h>
BUILDSTDERR:  
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16:
BUILDSTDERR:    return (int) floor(10000*soergeldistsign(a, b));
BUILDSTDERR:                 ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable]
BUILDSTDERR:    double d;
BUILDSTDERR:           ^
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bfp_gist.c
[ 91%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_gin.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bfp_gin.c
[ 91%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bitstring.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bitstring.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:    int i;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:    int i;
BUILDSTDERR:        ^
[ 91%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rdkit_io.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rdkit_io.c
[ 91%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rxn_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rxn_op.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment]
BUILDSTDERR:  //  /* keep compiler quiet - no extra ; */                                \
BUILDSTDERR:  ^
[ 91%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/sfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/sfp_op.c
[ 92%] Linking CXX shared library librdkit.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/sql
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/data
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/expected
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o  -L/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/lib64 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/lib64:/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib -lpq ../../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 -lboost_serialization -lcairo ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 92%] Built target rdkit
[ 92%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SmilesMolSupplier.cpp
[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SmilesWriter.cpp
[ 93%] Linking CXX executable testInchi
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testInchi.dir/test.cpp.o  -o testInchi -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib -linchi ../../lib/libRDKitRDInchiLib.so.1.2018.03.2 -linchi ../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../lib/libRDKitDepictor.so.1.2018.03.2 ../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SmilesWriter.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 93%] Linking CXX executable testMMFFForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o  -o testMMFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.2 ../../../lib/libRDKitDistGeometry.so.1.2018.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.2 ../../../lib/libRDKitForceField.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitMolAlign.so.1.2018.03.2 ../../../lib/libRDKitOptimizer.so.1.2018.03.2 ../../../lib/libRDKitAlignment.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
[ 93%] Built target testInchi
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
Scanning dependencies of target testReaction
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Scanning dependencies of target testEnumeration
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/testReaction.cpp
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Built target testMMFFForceField
[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SDWriter.cpp
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testReactionFingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp:378:8: warning: variable 'doLong' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    bool doLong = false;
BUILDSTDERR:         ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/SDWriter.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 93%] Linking CXX executable testEnumeration
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o  -o testEnumeration -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Built target testEnumeration
[ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/TDTWriter.cpp
[ 94%] Linking CXX executable testReactionFingerprints
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o  -o testReactionFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemReactions
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Built target testReactionFingerprints
[ 94%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/TDTWriter.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
[ 94%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/PDBWriter.cpp
Scanning dependencies of target moldraw2DTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/test1.cpp
[ 94%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/PDBWriter.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 94%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Built target rdChemReactions
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DRxnTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/rxn_test1.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Built target rdmolfiles
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDraw2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
[ 94%] Linking CXX executable moldraw2DTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o  -o moldraw2DTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lcairo 
[ 94%] Linking CXX executable testReaction
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o  -o testReaction -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[ 95%] Linking CXX executable moldraw2DRxnTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o  -o moldraw2DRxnTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lcairo 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target testFMCS
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 95%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/testFMCS_Unit.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
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[ 96%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
[ 96%] Linking CXX executable testFMCS
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o  -o testFMCS -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 96%] Built target testFMCS
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCStest
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 97%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test/testFMCS.cpp
[ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
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[ 97%] Built target rdFMCS
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 97%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/testMolHash.cpp
[ 97%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolDraw2D.so.1.2018.03.2 ../../../../lib/libRDKitChemReactions.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.2 ../../../../lib/libRDKitCatalogs.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFingerprints.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 -lcairo ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread -lboost_serialization 
[ 97%] Linking CXX executable FMCStest
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o  -o FMCStest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 97%] Built target rdMolDraw2D
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 97%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 97%] Built target FMCStest
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 97%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
[ 98%] Linking CXX executable testMolHash
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o  -o testMolHash -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 98%] Built target testMolHash
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 98%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
[ 98%] Linking CXX executable testMMPA
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o  -o testMMPA -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 98%] Built target testMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target testStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 98%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp
[ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMolHash.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 98%] Built target rdMolHash
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target rdStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 98%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap/structchecker.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testLoadOptionsFromFiles()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:139:8: warning: unused variable 'ok' [-Wunused-variable]
BUILDSTDERR:    bool ok;
BUILDSTDERR:         ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testStereo()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:324:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testOptionsDefault()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:400:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtomWithDefaultGoodAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:424:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtom()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:448:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificExamples()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:603:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                      ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificOrder()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:676:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformTau()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:705:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:749:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'int main(int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:844:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, const char* argv[]) {
BUILDSTDERR:           ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:844:32: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, const char* argv[]) {
BUILDSTDERR:                     ~~~~~~~~~~~~^~~~~~
[ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitMMPA.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 98%] Built target rdMMPA
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
Scanning dependencies of target testRGroupDecomp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 99%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
[100%] Linking CXX executable testStructChecker
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o  -o testStructChecker -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target testStructChecker
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target rdRGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp
[100%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitStructChecker.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitDescriptors.so.1.2018.03.2 ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
[100%] Linking CXX executable testRGroupDecomp
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o  -o testRGroupDecomp -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target rdStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target testRGroupDecomp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:            " returning.");
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[100%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_2/python3/lib: ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.2 ../../../../lib/libRDKitFMCS.so.1.2018.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.2 ../../../../lib/libRDKitRDBoost.so.1.2018.03.2 -lpython3.7m -lboost_python3 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.2 ../../../../lib/libRDKitDepictor.so.1.2018.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.2 ../../../../lib/libRDKitGraphMol.so.1.2018.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.2 ../../../../lib/libRDKitDataStructs.so.1.2018.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.2 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target rdRGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target testReaction
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/CMakeFiles 0
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.iIPgCp
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64
+ cd rdkit-Release_2018_03_2
+ pushd python2
~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2018_03_2/python2 -B/builddir/build/BUILD/rdkit-Release_2018_03_2/python2 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
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make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  2%] Built target RDGeneral
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  4%] Built target DataStructs
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[  5%] Built target RDGeometryLib
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 10%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 11%] Built target SubstructMatch
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 11%] Built target Depictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 14%] Built target SmilesParse
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 14%] Built target RDInchiLib
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/rdkit/Chem/inchi.py
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 14%] Built target inchi_support
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 15%] Built target EigenSolvers
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 16%] Built target MolTransforms
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 19%] Built target FileParsers
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 19%] Built target Subgraphs
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 20%] Built target PartialCharges
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target Descriptors
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/testInchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target testInchi
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/RDBoost/CMakeFiles/RDBoost.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target RDBoost
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target rdinchi
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target coordgen_support
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testRDValue.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target testRDValue
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 22%] Built target testDict
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 23%] Built target rdBase
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 24%] Built target testDataStructs
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 25%] Built target testFPB
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 25%] Built target testMultiFPB
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 27%] Built target cDataStructs
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 27%] Built target testTransforms
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 27%] Built target testGrid
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target rdGeometry
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target testMatrices
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target Alignment
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target testAlignment
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target rdAlignment
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target Optimizer
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 28%] Built target testOptimizer
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 32%] Built target ForceField
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 33%] Built target ForceFieldHelpers
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Built target testUFFForceField
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 34%] Built target MolAlign
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 35%] Built target DistGeometry
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 35%] Built target DistGeomHelpers
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 36%] Built target testMMFFForceField
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 36%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 36%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 37%] Built target DistGeom
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 38%] Built target Catalogs
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 38%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 39%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 40%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 41%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 41%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Built target resMolSupplierTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 42%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 43%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 43%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 43%] Built target hanoiTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target ChemTransforms
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target testDepictor
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target rdDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 44%] Built target smiTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 45%] Built target cxsmilesTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 46%] Built target smaTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 47%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 47%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 47%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 48%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 48%] Built target testTplParser
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 49%] Built target testMol2ToMol
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 50%] Built target testSubstructMatch
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 51%] Built target FilterCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 53%] Built target Fingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 55%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 55%] Built target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 55%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 56%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 56%] Built target rdChemReactions
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 57%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 57%] Built target testSubgraphs1
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 57%] Built target testSubgraphs2
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 57%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 58%] Built target rdfiltercatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 59%] Built target FragCatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 60%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 61%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 62%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 62%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 63%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 63%] Built target testFingerprints
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 64%] Built target testPartialCharges
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 64%] Built target rdPartialCharges
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 64%] Built target testMolTransforms
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target rdMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target testCrystalForceField
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 65%] Built target rdForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target testDistGeomHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target rdDistGeom
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target testMolAlign
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 66%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target MolChemicalFeatures
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 67%] Built target testFeatures
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target ShapeHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target testShapeHelpers
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 68%] Built target rdShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 69%] Built target MolCatalog
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 69%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 69%] Built target rdMolCatalog
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 70%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Built target FMCS
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 71%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 72%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 73%] Built target FMCStest
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 73%] Built target MolHash
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 74%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 74%] Built target rdMolHash
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target MMPA
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target testMMPA
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 75%] Built target rdMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 77%] Built target StructChecker
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Built target testStructChecker
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 78%] Built target rdStructChecker
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target ReducedGraphs
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 79%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target rdReducedGraphs
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 80%] Built target Trajectory
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target SubstructLibrary
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 81%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 82%] Built target rdSubstructLibrary
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 82%] Built target RGroupDecomposition
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 83%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 83%] Built target rdRGroupDecomposition
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Built target SLNParse
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Built target testSLNParse
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 84%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 85%] Built target rdmolops
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 85%] Built target rdqueries
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 87%] Built target rdchem
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 88%] Built target rdmolfiles
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 89%] Built target rdtrajectory
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 89%] Built target testQuery
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 90%] Built target testMatCalc
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 91%] Built target rdMetricMatrixCalc
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 92%] Built target hc
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Built target SimDivPickers
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 93%] Built target testSimDivPickers
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 94%] Built target rdSimDivPickers
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 95%] Built target Clustering
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 95%] Built target InfoTheory
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Built target rdInfoTheory
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Built target cQuantize
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Built target ChemicalFeatures
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 96%] Built target testChemicalFeatures
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[ 97%] Built target rdChemicalFeatures
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python2 /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[2]: Nothing to be done for 'Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
[100%] Built target rdkit
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python2/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python2'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/cmake/rdkit-targets.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/cmake/rdkit-config.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/cmake/rdkit-config-version.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SDSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/demo.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/Node.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/Supply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/Transform.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/Filter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/Output.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/VLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Numerics
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Numerics/rdAlignment.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Numerics/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/GraphDescriptors.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/EnumerateStereoisomers.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/FunctionalGroups.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Graphs.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/SimpleEnum
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/SimpleEnum/Enumerator.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/SimpleEnum/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/MolSurf.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Crippen.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/FeatFinderCLI.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/MCS.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/SATIS.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/ChemicalFeatures.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Randomize.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Pharm2D
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Pharm2D/SigFactory.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Pharm2D/Matcher.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Pharm2D/Utils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Pharm2D/Generate.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Pharm2D/LazyGenerator.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Pharm2D/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/QED.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/MolKey
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/MolKey/InchiInfo.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/MolKey/MolKey.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/MolKey/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Recap.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Fingerprints
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Fingerprints/ClusterMols.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Fingerprints/FingerprintMols.py
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/mmpa/data/sample_cansmirks.txt
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/mmpa/data/sample_smirks.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/pzc
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/fraggle
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Projects/DbCLI/SearchDb.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/RDKit/Projects/cmake_install.cmake
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.2
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-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDInchiLib.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/inchi.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdinchi.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdinchi.so" to ""
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-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDataStructs.so.1.2018.03.2
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDataStructs.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/BitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/BitVects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/BitVectUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/DatastructsException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/DiscreteDistMat.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/DiscreteValueVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/ExplicitBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/SparseBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/SparseIntVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/FPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/MultiFPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/DataStructs/cDataStructs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/DataStructs/cDataStructs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeometryLib.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeometryLib.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/Grid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/GridUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/point.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/Transform2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/Transform3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/Transform.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/UniformGrid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/Utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Geometry/rdGeometry.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Geometry/rdGeometry.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/Matrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/SquareMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/SymmMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/Vector.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitAlignment.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitAlignment.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitAlignment.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitAlignment.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/Alignment/AlignPoints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Numerics/rdAlignment.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Numerics/rdAlignment.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitEigenSolvers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitEigenSolvers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitOptimizer.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitOptimizer.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitOptimizer.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitOptimizer.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceField.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceField.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceField.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceField.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/Contrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/ForceField.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/Inversion.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/StretchBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/OopBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeometry.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeometry.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeometry.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeometry.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/BoundsMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/ChiralSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/TriangleSmooth.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitCatalogs.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitCatalogs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitCatalogs.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitCatalogs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Catalogs/CatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Catalogs/Catalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Catalogs/CatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitGraphMol.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitGraphMol.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitGraphMol.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitGraphMol.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Atom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/atomic_data.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/AtomIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Bond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/BondIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Chirality.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Conformer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/details.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/GraphMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/QueryAtom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/QueryBond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/QueryOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/RDKitBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Resonance.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/RingInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Rings.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ROMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/RWMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SanitException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/new_canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolBundle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDepictor.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDepictor.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDepictor.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDepictor.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSmilesParse.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSmilesParse.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSmilesParse.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSmilesParse.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFileParsers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFileParsers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFileParsers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFileParsers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructMatch.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructMatch.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemReactions.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemReactions.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemReactions.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemReactions.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/Enumerate.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/EnumerateBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationStrategyBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/CartesianProduct.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/RandomSample.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemReactions.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemReactions.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemTransforms.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemTransforms.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemTransforms.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemTransforms.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubgraphs.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubgraphs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubgraphs.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubgraphs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFilterCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFilterCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFragCatalog.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFragCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFragCatalog.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFragCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfragcatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfragcatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDescriptors.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDescriptors.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDescriptors.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDescriptors.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/Crippen.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/MQN.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/Property.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFingerprints.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFingerprints.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFingerprints.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFingerprints.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitPartialCharges.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitPartialCharges.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitPartialCharges.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitPartialCharges.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolTransforms.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolTransforms.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolTransforms.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolTransforms.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceFieldHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceFieldHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeomHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeomHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolAlign.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolAlign.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolAlign.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolAlign.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolAlign.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolAlign.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolChemicalFeatures.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitShapeHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitShapeHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolCatalog.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolCatalog.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolDraw2D.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolDraw2D.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFMCS.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFMCS.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFMCS.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFMCS.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/Seed.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdFMCS.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdFMCS.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolHash.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolHash.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolHash.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolHash.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolHash/MolHash.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolHash.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolHash.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMMPA.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMMPA.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMMPA.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMMPA.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMMPA.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMMPA.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitStructChecker.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitStructChecker.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitStructChecker.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitStructChecker.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/Utilites.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/Pattern.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/Stereo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdStructChecker.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdStructChecker.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitReducedGraphs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitReducedGraphs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitTrajectory.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitTrajectory.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitTrajectory.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitTrajectory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructLibrary.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructLibrary.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRGroupDecomposition.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRGroupDecomposition.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSLNParse.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSLNParse.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSLNParse.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSLNParse.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/AndQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/EqualityQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/GreaterEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/GreaterQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/LessEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/LessQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/OrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/Query.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/QueryObjects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/RangeQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/SetQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/XOrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Features/Feature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSimDivPickers.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSimDivPickers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSimDivPickers.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSimDivPickers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/SimDivPickers/DistPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKithc.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKithc.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKithc.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitInfoTheory.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitInfoTheory.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitInfoTheory.so.1.2018.03.2" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitInfoTheory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemicalFeatures.so.1.2018.03.2
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2018_03_2/python2/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
+ install -D librdkit.so /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/pgsql/rdkit.so
+ install -D rdkit.control /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/pgsql/extension/rdkit.control
+ install -D rdkit--3.5.sql /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/pgsql/extension/rdkit--3.5.sql
~/build/BUILD/rdkit-Release_2018_03_2/python2 ~/build/BUILD/rdkit-Release_2018_03_2
~/build/BUILD/rdkit-Release_2018_03_2
~/build/BUILD/rdkit-Release_2018_03_2/python3 ~/build/BUILD/rdkit-Release_2018_03_2
+ popd
+ popd
+ pushd python3
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2018_03_2/python3 -B/builddir/build/BUILD/rdkit-Release_2018_03_2/python3 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/CMakeFiles /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  2%] Built target RDGeneral
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  4%] Built target DataStructs
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[  5%] Built target RDGeometryLib
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 10%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 11%] Built target SubstructMatch
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 11%] Built target Depictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 14%] Built target SmilesParse
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 14%] Built target RDInchiLib
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/rdkit/Chem/inchi.py
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 14%] Built target inchi_support
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 15%] Built target EigenSolvers
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 16%] Built target MolTransforms
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 19%] Built target FileParsers
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 19%] Built target Subgraphs
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 20%] Built target PartialCharges
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target Descriptors
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/testInchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target testInchi
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/RDBoost/CMakeFiles/RDBoost.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target RDBoost
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target rdinchi
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target coordgen_support
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testRDValue.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target testRDValue
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 22%] Built target testDict
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 23%] Built target rdBase
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 24%] Built target testDataStructs
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 25%] Built target testFPB
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 25%] Built target testMultiFPB
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 27%] Built target cDataStructs
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 27%] Built target testTransforms
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 27%] Built target testGrid
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target rdGeometry
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target testMatrices
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target Alignment
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target testAlignment
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target rdAlignment
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target Optimizer
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 28%] Built target testOptimizer
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 32%] Built target ForceField
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 33%] Built target ForceFieldHelpers
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target testUFFForceField
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 34%] Built target MolAlign
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 35%] Built target DistGeometry
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 35%] Built target DistGeomHelpers
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target testMMFFForceField
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 36%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 37%] Built target DistGeom
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 38%] Built target Catalogs
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 38%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 39%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 40%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 41%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 42%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 42%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 42%] Built target resMolSupplierTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 42%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 43%] Built target hanoiTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target ChemTransforms
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target testDepictor
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target rdDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 44%] Built target smiTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 45%] Built target cxsmilesTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 46%] Built target smaTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 47%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 47%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 47%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 48%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 48%] Built target testTplParser
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 49%] Built target testMol2ToMol
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 50%] Built target testSubstructMatch
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 51%] Built target FilterCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 53%] Built target Fingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 55%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 55%] Built target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 55%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 56%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 56%] Built target rdChemReactions
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 57%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 57%] Built target testSubgraphs1
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 57%] Built target testSubgraphs2
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 57%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 58%] Built target rdfiltercatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 59%] Built target FragCatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 60%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 61%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 62%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 62%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 63%] Built target testFingerprints
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target testPartialCharges
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target rdPartialCharges
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 64%] Built target testMolTransforms
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target rdMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target testCrystalForceField
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 65%] Built target rdForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 66%] Built target testDistGeomHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 66%] Built target rdDistGeom
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 66%] Built target testMolAlign
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 66%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target MolChemicalFeatures
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 67%] Built target testFeatures
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 68%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 68%] Built target ShapeHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 68%] Built target testShapeHelpers
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 68%] Built target rdShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 69%] Built target MolCatalog
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 69%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 69%] Built target rdMolCatalog
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 70%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target FMCS
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 71%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 72%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 73%] Built target FMCStest
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 73%] Built target MolHash
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 74%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 74%] Built target rdMolHash
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 75%] Built target MMPA
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 75%] Built target testMMPA
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 75%] Built target rdMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 77%] Built target StructChecker
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Built target testStructChecker
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 78%] Built target rdStructChecker
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Built target ReducedGraphs
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 79%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 80%] Built target rdReducedGraphs
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 80%] Built target Trajectory
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target SubstructLibrary
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 81%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 82%] Built target rdSubstructLibrary
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 82%] Built target RGroupDecomposition
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 83%] Built target rdRGroupDecomposition
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Built target SLNParse
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Built target testSLNParse
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 84%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 85%] Built target rdmolops
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 85%] Built target rdqueries
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 87%] Built target rdchem
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 88%] Built target rdmolfiles
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 89%] Built target rdtrajectory
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 89%] Built target testQuery
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 90%] Built target testMatCalc
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 91%] Built target rdMetricMatrixCalc
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 92%] Built target hc
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Built target SimDivPickers
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 93%] Built target testSimDivPickers
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 94%] Built target rdSimDivPickers
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 95%] Built target Clustering
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 95%] Built target InfoTheory
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 96%] Built target rdInfoTheory
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 96%] Built target cQuantize
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 96%] Built target ChemicalFeatures
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 96%] Built target testChemicalFeatures
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[ 97%] Built target rdChemicalFeatures
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python3 /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[2]: Nothing to be done for 'Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
[100%] Built target rdkit
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_2/python3/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_2/python3'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Old export file "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/cmake/rdkit-targets.cmake" will be replaced.  Removing files [/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake].
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/cmake/rdkit-targets.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/cmake/rdkit-config.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/cmake/rdkit-config-version.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/RDPaths.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib/NodeLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib/NodeLib/SDSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/VLib/NodeLib/demo.py
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDInchiLib.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDInchiLib.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/inchi.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdinchi.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdinchi.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeneral.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeneral.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeneral.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/Exceptions.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/BadFileException.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/BoostStartInclude.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/BoostEndInclude.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/Dict.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/FileParseException.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/Invariant.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/RDAny.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/RDValue.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/RDValue-doublemagic.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/RDValue-taggedunion.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/RDLog.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/RDProps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/RDThreads.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/StreamOps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/types.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/versions.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/LocaleSwitcher.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/Ranking.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/hanoiSort.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/hash/hash
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/hash/hash/hash_fwd.hpp
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/hash/hash/detail
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDBoost.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDBoost.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDBoost.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDBoost.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDBoost/Wrap.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDBoost/PySequenceHolder.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDBoost/list_indexing_suite.hpp
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDBoost/python.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDBoost/boost_numpy.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/RDBoost/python_streambuf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/rdBase.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/rdBase.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDataStructs.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDataStructs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDataStructs.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDataStructs.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/base64.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/BitOps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/BitVect.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/BitVects.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/BitVectUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/DatastructsException.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/DiscreteDistMat.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/DiscreteValueVect.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/ExplicitBitVect.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/SparseBitVect.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/SparseIntVect.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/FPBReader.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataStructs/MultiFPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/DataStructs/cDataStructs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/DataStructs/cDataStructs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeometryLib.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeometryLib.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/Grid3D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/GridUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/point.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/Transform2D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/Transform3D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/Transform.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/UniformGrid3D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Geometry/Utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Geometry/rdGeometry.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Geometry/rdGeometry.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/Matrix.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/SquareMatrix.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/SymmMatrix.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/Vector.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitAlignment.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitAlignment.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitAlignment.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitAlignment.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/Alignment/AlignPoints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Numerics/rdAlignment.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Numerics/rdAlignment.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitEigenSolvers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitEigenSolvers.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitOptimizer.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitOptimizer.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitOptimizer.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitOptimizer.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceField.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceField.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceField.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceField.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/Contrib.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/ForceField.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/AngleBend.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/BondStretch.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/Contribs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/Nonbonded.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/Params.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/Inversion.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/AngleBend.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/BondStretch.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/StretchBend.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/OopBend.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/Contribs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ForceField/MMFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/ForceField/rdForceField.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/ForceField/rdForceField.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeometry.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeometry.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeometry.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeometry.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/BoundsMatrix.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/ChiralSet.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DistGeom/TriangleSmooth.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/DistanceGeometry/DistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitCatalogs.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitCatalogs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitCatalogs.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitCatalogs.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Catalogs/CatalogEntry.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Catalogs/Catalog.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Catalogs/CatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitGraphMol.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitGraphMol.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitGraphMol.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitGraphMol.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Atom.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/atomic_data.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/AtomIterators.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Bond.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/BondIterators.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Canon.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Chirality.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Conformer.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/details.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/GraphMol.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolOps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolPickler.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/QueryAtom.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/QueryBond.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/QueryOps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/RDKitBase.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Resonance.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/RingInfo.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Rings.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ROMol.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/RWMol.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SanitException.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/new_canon.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolBundle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDepictor.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDepictor.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDepictor.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDepictor.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDepictor.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDepictor.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSmilesParse.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSmilesParse.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSmilesParse.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSmilesParse.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFileParsers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFileParsers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFileParsers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFileParsers.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructMatch.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructMatch.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemReactions.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemReactions.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemReactions.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemReactions.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/Enumerate.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/EnumerateBase.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationPickler.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/EnumerationStrategyBase.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/CartesianProduct.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/RandomSample.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemReactions.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemReactions.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemTransforms.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemTransforms.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemTransforms.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemTransforms.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubgraphs.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubgraphs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubgraphs.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubgraphs.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFilterCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFilterCatalog.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfiltercatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfiltercatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFragCatalog.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFragCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFragCatalog.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFragCatalog.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfragcatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfragcatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDescriptors.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDescriptors.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDescriptors.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDescriptors.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/Crippen.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/MQN.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/Property.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolDescriptors.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolDescriptors.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFingerprints.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFingerprints.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFingerprints.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFingerprints.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitPartialCharges.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitPartialCharges.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitPartialCharges.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitPartialCharges.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdPartialCharges.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdPartialCharges.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolTransforms.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolTransforms.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolTransforms.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolTransforms.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolTransforms.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolTransforms.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceFieldHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitForceFieldHelpers.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeomHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitDistGeomHelpers.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolAlign.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolAlign.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolAlign.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolAlign.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolAlign.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolAlign.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolChemicalFeatures.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolChemicalFeatures.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitShapeHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitShapeHelpers.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdShapeHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdShapeHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolCatalog.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolCatalog.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolCatalog.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolCatalog.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolDraw2D.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolDraw2D.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFMCS.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFMCS.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFMCS.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitFMCS.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/Seed.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdFMCS.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdFMCS.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolHash.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolHash.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolHash.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolHash.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MolHash/MolHash.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolHash.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolHash.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMMPA.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMMPA.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMMPA.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMMPA.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMMPA.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMMPA.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitStructChecker.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitStructChecker.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitStructChecker.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitStructChecker.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/Utilites.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/Pattern.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/Stereo.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdStructChecker.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdStructChecker.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitReducedGraphs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitReducedGraphs.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitTrajectory.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitTrajectory.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitTrajectory.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitTrajectory.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructLibrary.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSubstructLibrary.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRGroupDecomposition.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRGroupDecomposition.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSLNParse.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSLNParse.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSLNParse.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSLNParse.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSLNParse.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdchem.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdchem.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolops.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolops.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdqueries.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdqueries.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolfiles.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolfiles.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdtrajectory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdtrajectory.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/AndQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/EqualityQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/GreaterEqualQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/GreaterQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/LessEqualQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/LessQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/OrQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/Query.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/QueryObjects.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/RangeQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/SetQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Query/XOrQuery.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/Features/Feature.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSimDivPickers.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSimDivPickers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSimDivPickers.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitSimDivPickers.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/SimDivPickers/DistPicker.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKithc.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKithc.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKithc.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/ML/Cluster/Clustering.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/ML/Cluster/Clustering.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitInfoTheory.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitInfoTheory.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitInfoTheory.so.1.2018.03.2" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitInfoTheory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/ML/Data/cQuantize.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/ML/Data/cQuantize.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemicalFeatures.so.1.2018.03.2
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemicalFeatures.so.1
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemicalFeatures.so
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/RDPaths.py
~/build/BUILD/rdkit-Release_2018_03_2
+ popd
+ rm -r /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64//usr/share/RDKit
+ FMCS=/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs
+ sed '1{\@^#!/usr/bin/python2@d}' /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ touch -r /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.new
+ mv /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ rm /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs
+ FMCS=/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs
+ sed '1{\@^#!/usr/bin/python3@d}' /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ touch -r /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.new
+ mv /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ rm /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 2018.03.2-2.fc29 --unique-debug-suffix -2018.03.2-2.fc29.riscv64 --unique-debug-src-base rdkit-2018.03.2-2.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/rdkit-Release_2018_03_2
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitInfoTheory.so.1.2018.03.2
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitMolTransforms.so.1.2018.03.2
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explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemicalFeatures.so.1.2018.03.2
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitChemicalFeatures.so.1.2018.03.2
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDBoost.so.1.2018.03.2
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDBoost.so.1.2018.03.2
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.2
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.2
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.2
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.2
/usr/lib/rpm/sepdebugcrcfix: Updated 126 CRC32s, 0 CRC32s did match.
BUILDSTDERR: 17163 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib/debug/usr/lib64/python3.7 using /usr/bin/python3.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/lib64/python3.7 using /usr/bin/python3.7
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
BUILDSTDERR: *** WARNING: ./usr/share/pgsql/extension/rdkit.control is executable but has empty or no shebang, removing executable bit
BUILDSTDERR: *** WARNING: ./usr/share/pgsql/extension/rdkit--3.5.sql is executable but has empty or no shebang, removing executable bit
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.7hvcid
Processing files: rdkit-2018.03.2-2.fc29.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.C37KH4
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/doc/rdkit
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/doc/rdkit
+ cp -pr ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/doc/rdkit
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.nP4ZYZ
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
+ LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/licenses/rdkit
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/licenses/rdkit
+ cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/licenses/rdkit
+ exit 0
Provides: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) rdkit = 2018.03.2-2.fc29 rdkit(riscv-64) = 2018.03.2-2.fc29
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python3.so.1.66.0()(64bit) libboost_serialization.so.1.66.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libpython3.7m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-devel-2018.03.2-2.fc29.riscv64
Provides: rdkit-devel = 2018.03.2-2.fc29 rdkit-devel(riscv-64) = 2018.03.2-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit)
Processing files: rdkit-doc-2018.03.2-2.fc29.noarch
Processing files: python2-rdkit-2018.03.2-2.fc29.riscv64
Provides: python-rdkit = 2018.03.2-2.fc29 python2-rdkit = 2018.03.2-2.fc29 python2-rdkit(riscv-64) = 2018.03.2-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python.so.1.66.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 2.7 rtld(GNU_HASH)
Obsoletes: python-rdkit < 2018.03.2-2.fc29
Processing files: python3-rdkit-2018.03.2-2.fc29.riscv64
Provides: python3-rdkit = 2018.03.2-2.fc29 python3-rdkit(riscv-64) = 2018.03.2-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python3.so.1.66.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libpython3.7m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.7 rtld(GNU_HASH)
Processing files: rdkit-postgresql-2018.03.2-2.fc29.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.1hAC5p
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/doc/rdkit-postgresql
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/doc/rdkit-postgresql
+ cp -pr python2/Code/PgSQL/rdkit/README /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64/usr/share/doc/rdkit-postgresql
+ exit 0
Provides: librdkit.so()(64bit) rdkit-postgresql = 2018.03.2-2.fc29 rdkit-postgresql(riscv-64) = 2018.03.2-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-debugsource-2018.03.2-2.fc29.riscv64
Provides: rdkit-debugsource = 2018.03.2-2.fc29 rdkit-debugsource(riscv-64) = 2018.03.2-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: rdkit-debuginfo-2018.03.2-2.fc29.riscv64
Provides: debuginfo(build-id) = 00e03ae876aa699b760efb6653263eb0d121d2af debuginfo(build-id) = 0b0595bcbb6a1ce647cdf28fd23d3fc5d38cee3e debuginfo(build-id) = 0c3b988ccccb68d41e5f473cb5ddeb672ee286d1 debuginfo(build-id) = 0d19fae87d32fca25776d60077c964ada361bcec debuginfo(build-id) = 18356d438d157a69bdb58151e88e1a8f4a55e180 debuginfo(build-id) = 188d94ff6d1f917600e0220588dd14d079762792 debuginfo(build-id) = 1903bde4707a2ba39fdc8e224f6058a08c2945fc debuginfo(build-id) = 195df0ca0094b48b9ca0b97cb353c1757a53c8bf debuginfo(build-id) = 1d37302e46a49083dd7841094b7bb9277f17bca3 debuginfo(build-id) = 1d566df11d0ef82724338dd1984aa9189292ff44 debuginfo(build-id) = 2331171f99619a6f6c8c7693bd08664b8e2b6b73 debuginfo(build-id) = 2c7b86ff5573600f0580faa7cdf7fae7b5febca6 debuginfo(build-id) = 309df17643d6cfd25066418424da30c8331cb5d1 debuginfo(build-id) = 356a1f1c62a1b44248a3184fd2d4c60d09644b59 debuginfo(build-id) = 4300771181b4d3f128eb8e081990609d5954194c debuginfo(build-id) = 4a4bb6e7713ec2aecb718fd8cd389675642a6494 debuginfo(build-id) = 4c23f52cfa12b188c49549b912e09f26e199baa8 debuginfo(build-id) = 51f8414167876ffdbdd9a10da3ea4b5698b8858b debuginfo(build-id) = 54eae33c05a07324c213913403110c75e844605b debuginfo(build-id) = 556119b9b7722b291c9d8ca4c0b9f594b2a9f1e6 debuginfo(build-id) = 599903046ddf7a862537f83447259d4049b6e92f debuginfo(build-id) = 5a555461eae0c5514a6507853ea95d7afe89e629 debuginfo(build-id) = 5d70cd884f2a43b3e6d0bcb27f98d208c1112681 debuginfo(build-id) = 64717ac839ef27bec81936b720188e95bae3e710 debuginfo(build-id) = 6a4edced9b6e9d4ac9d6cba1a0e6b5d6119efb50 debuginfo(build-id) = 71503b186fae3e3973c2072d73c8e0857215db83 debuginfo(build-id) = 72b6c8058231024113427b53f8ef77fcfc3a657f debuginfo(build-id) = 7607e429397975201901627ccdc40b95400097d3 debuginfo(build-id) = 79ddba71313c681100acec3716e1c4534bcb5b3e debuginfo(build-id) = 7d63810028e3807431a4c85b69f54d0598789f35 debuginfo(build-id) = 964020d7054c3912312d694e016516ae01098eb8 debuginfo(build-id) = 9e7f01473314b7425aa126d1f6cf117b717c3de4 debuginfo(build-id) = aebf00f55c91f9e5abefad74ed7dafd258491f63 debuginfo(build-id) = b18ab5e28e198da7701e77b4f7203e8be2b2133d debuginfo(build-id) = b7cac97589b28e8dc435659892ebba27f352e6ed debuginfo(build-id) = bbf066224365c74b7a53d0618b081ff884e28d48 debuginfo(build-id) = c1523530e2cec76474a08180eadd6ae2429bb2e8 debuginfo(build-id) = c60f6d06e0646b1bb664fa7fd1c33688ef20ef7f debuginfo(build-id) = c7c4266838ea7a706af8eb2c37ff9c873676f035 debuginfo(build-id) = cca4406d31a92677aaa90a768fe3cd77dcb2403f debuginfo(build-id) = d958815d8cfeb3630de72b6f008a9c29480786be debuginfo(build-id) = e43660d3690b32fbc618e1fb0961b5f4e0858ba7 debuginfo(build-id) = e475973379426d13171f6d9647b3303e82cef1e0 debuginfo(build-id) = ed51b67ee84e21be72c99873b20efcdc44a68b55 debuginfo(build-id) = f8800ee1d028b53bd9232c414b06cc589e3c392b rdkit-debuginfo = 2018.03.2-2.fc29 rdkit-debuginfo(riscv-64) = 2018.03.2-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(riscv-64) = 2018.03.2-2.fc29
Processing files: python2-rdkit-debuginfo-2018.03.2-2.fc29.riscv64
Provides: debuginfo(build-id) = 08b0f7039a08409f4c8ee7313133508a977e3b6e debuginfo(build-id) = 0c0e58f92362c6efbe4d2d6cbb907ce03e746566 debuginfo(build-id) = 179838b01e99bf2bff82122b24115b053257cace debuginfo(build-id) = 342f23b771ea120d4b6b63bf8784ef527ca9574c debuginfo(build-id) = 37edf510a428fb8b4fc7d9ff66c8890e13f2835e debuginfo(build-id) = 3e95cb312f6088b4db82c93a4413e44a972156e8 debuginfo(build-id) = 40501aa86ccb505e505f0cf864349ee988c710b1 debuginfo(build-id) = 44802e7b66cdce3c7e95a0dce308c8543db29cc8 debuginfo(build-id) = 4de0d499696fcbc9cb7c3d40d51b57658ad6e9b9 debuginfo(build-id) = 4f25314ecfafb640059f5c8f9403ba2d0179a5d2 debuginfo(build-id) = 51850b09720d7fd82bc0b3dc497ee7a9b8a699ae debuginfo(build-id) = 5f84560e076f3808ba0285b28033c6710e2c5dba debuginfo(build-id) = 5ffaf77d2ce7c2f4a34df8da814234b2bfbca2d8 debuginfo(build-id) = 6154290d2933a986bec1542924bee3b3daf7365f debuginfo(build-id) = 71273a94156882af1aa36773428171543a3527b3 debuginfo(build-id) = 77bd08b2bba0c2b9d9ba0750270b991dad04da47 debuginfo(build-id) = 7d6b512382af0e4b61706a35bcb838677788a4aa debuginfo(build-id) = 82cdb4602fd63e368cc929fa1996b64e5b3e857b debuginfo(build-id) = 87d4ff6cd2b12a67dcd987cf3218956c52f3f843 debuginfo(build-id) = 9375241db0c512aa31ad769385e50eb0034edb8e debuginfo(build-id) = 9847cbf371996b1042da2a20c55ab8ba7a3c6026 debuginfo(build-id) = 9b3d118a372cd36767b745037763621bbaecc48a debuginfo(build-id) = aa11335922268b30642640edf894776a17aa72a4 debuginfo(build-id) = b1d6c55e13afe223b9fb5081ed485d58f10d9b9d debuginfo(build-id) = b2dbc19226c06fb9fec2f97fe7b67d8461eddc44 debuginfo(build-id) = b997cbbffd1a28ebabdfcf81e9c90c1a9e28628e debuginfo(build-id) = c00af9f4e39c5147a5536f7738965fd617ac67fb debuginfo(build-id) = c1c88493ce15f55cdf17d62089499072a840a431 debuginfo(build-id) = c5c05e0a23d67b21816c70b44e15cf07b03def64 debuginfo(build-id) = d0924bcb3588bcbc56602733682aa20afc6d69ff debuginfo(build-id) = d187c1649fa5b12ae2a204a10fc3551ecf8ef21b debuginfo(build-id) = d2ca39269ff5a67809e2d96ac019ef51925a558d debuginfo(build-id) = d4ba1ceefb1933118e3217d82ef42152458b806f debuginfo(build-id) = d5892d1ad82790afb83adf7c76a269ddf2b7a7e7 debuginfo(build-id) = d6dac81af62ee4521b2758cb8c806372b2ddeceb debuginfo(build-id) = d962edf6851cb78a593d1df8f76b0b72b5c4aa7e debuginfo(build-id) = db5a62f628cd0bbe600f186b57fc37bb6537a684 debuginfo(build-id) = e05be62bc72bd4a00e9ab0da33cb25962da8ebf5 debuginfo(build-id) = e6619793ae2e6e631b66cc6d83f59566fffc6fc5 debuginfo(build-id) = f258bd89109cb670cc653764467367b55f1fab4c python2-rdkit-debuginfo = 2018.03.2-2.fc29 python2-rdkit-debuginfo(riscv-64) = 2018.03.2-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(riscv-64) = 2018.03.2-2.fc29
Processing files: python3-rdkit-debuginfo-2018.03.2-2.fc29.riscv64
Provides: debuginfo(build-id) = 0aca63f19e22f7eeb4e75795fa6a04544ab30cad debuginfo(build-id) = 0b118ba6786335f9781d0fa8395c7e79a993d3e3 debuginfo(build-id) = 0c57be2399b78278b8ce81fc5ff77c1e665d5ac2 debuginfo(build-id) = 127cd03db08ac7808181491dd3f3209c99ccd121 debuginfo(build-id) = 14ab733f5ef1a6b683f2d57fc03efe7d7ff78b66 debuginfo(build-id) = 1a9f3372585e60d998ca2dc8e27a73a0d326f831 debuginfo(build-id) = 1ceae5f9825927bf5651e849e612ddf1f9a939ed debuginfo(build-id) = 244d9377e3a0a436dae6b4ec6b035c31667acf17 debuginfo(build-id) = 24c68d24b86fed0d328924051ef625305326e5ae debuginfo(build-id) = 28fa040d1338ddffb3c56ab14ba5a94861c41f81 debuginfo(build-id) = 29c9ef830129f2b87ea7b257ea1f06f60348bba8 debuginfo(build-id) = 3e6b95faa95e12fde7da37f290ef7111a6b77dad debuginfo(build-id) = 4144633409e10250f697be4ee67eb61373d995f2 debuginfo(build-id) = 47e64958ba94a421d663ca4c6d564e83173cd0f3 debuginfo(build-id) = 48c5bfb565f5e69f9487aee0b36f4e8f3b88a98f debuginfo(build-id) = 582922891661e74705e7ee25cb0a0694d1a53999 debuginfo(build-id) = 611a787bcc06edbf01ce1536d69537f76067520e debuginfo(build-id) = 624b3084386c5ebb634fa68c28a7806fb631ed45 debuginfo(build-id) = 6f3ad35217dbedde76e70ed3f4be4dd115d6fba0 debuginfo(build-id) = 830f977322797e7b505df2110c66d784c2af8ca5 debuginfo(build-id) = 88072384fabc3204b76cb305fbc606171bf3f071 debuginfo(build-id) = 93b1025610c0049f79b2c93f9d48335c306650c0 debuginfo(build-id) = 9be6ccc6f75ee4e91bb57f7400cf51d09d714daa debuginfo(build-id) = a3f53e0b9ec7233b43e9302f1f97d0b921cb82a7 debuginfo(build-id) = a829e838ad327d0d1b773d0a06bb576e34c7dc36 debuginfo(build-id) = ad58f12d88fe2262477e2e59dcebf3f6d236f5f5 debuginfo(build-id) = bde2dbdff35ca8acf79bf04b72f0c73531c9fe20 debuginfo(build-id) = c66d8269311aa4eea89f433e9ced50aaed8e1934 debuginfo(build-id) = c722a1ec0c0d52c925c247b3429ee48c76f70419 debuginfo(build-id) = cba38837e7d74e90196269002fc070cd3c135af5 debuginfo(build-id) = cc7b8d3fe1f829fa07499fcb2162f3ae78da7f25 debuginfo(build-id) = d0f9311e198fb866998d41d0d38190cf77b373b9 debuginfo(build-id) = d8b4b87b58e637327fe5e6b83658930e5d7cc36a debuginfo(build-id) = de114bb63dd12ad2bd1a52de6b435014cf5cc8e6 debuginfo(build-id) = dfdaff16e3f7debb7e2b6c943ce95e3a87db42da debuginfo(build-id) = e023ef800a690aeb195b251f81b0f61f86999e36 debuginfo(build-id) = e3bf4590112eedeccc0bc71286fcccba280cc429 debuginfo(build-id) = e65e943f637edd8069d697d26650037bc787acd3 debuginfo(build-id) = ecf788ecc107a1d847906e9a15e9fa3e38f55036 debuginfo(build-id) = fdf0b91ac7eef670b18867b545c200a09f56f4dd python3-rdkit-debuginfo = 2018.03.2-2.fc29 python3-rdkit-debuginfo(riscv-64) = 2018.03.2-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(riscv-64) = 2018.03.2-2.fc29
Processing files: rdkit-postgresql-debuginfo-2018.03.2-2.fc29.riscv64
Provides: debuginfo(build-id) = a6137381731bd209ed484fb9ebdb641c27bf9ed9 rdkit-postgresql-debuginfo = 2018.03.2-2.fc29 rdkit-postgresql-debuginfo(riscv-64) = 2018.03.2-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(riscv-64) = 2018.03.2-2.fc29
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64
Wrote: /builddir/build/RPMS/rdkit-2018.03.2-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/rdkit-devel-2018.03.2-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/rdkit-doc-2018.03.2-2.fc29.noarch.rpm
Wrote: /builddir/build/RPMS/python2-rdkit-2018.03.2-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/python3-rdkit-2018.03.2-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-2018.03.2-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/rdkit-debugsource-2018.03.2-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/rdkit-debuginfo-2018.03.2-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/python2-rdkit-debuginfo-2018.03.2-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/python3-rdkit-debuginfo-2018.03.2-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-debuginfo-2018.03.2-2.fc29.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.jEqBu7
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_2
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2018.03.2-2.fc29.riscv64
+ exit 0
Child return code was: 0