Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/f33-build-227734-49669/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False sh: /usr/bin/perl: No such file or directory Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1590451200 Wrote: /builddir/build/SRPMS/libsbml-5.18.0-14.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/f33-build-227734-49669/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1590451200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.2kMUgT + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libSBML-5.18.0-Source + /usr/bin/gzip -dc /builddir/build/SOURCES/libSBML-5.18.0-core-plus-packages-src.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd libSBML-5.18.0-Source + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #1 (libsbml-fix_install_libpaths.patch): + echo 'Patch #1 (libsbml-fix_install_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/bindings/ruby/CMakeLists.txt patching file src/bindings/csharp/CMakeLists.txt patching file src/bindings/octave/CMakeLists.txt patching file src/bindings/perl/CMakeLists.txt + echo 'Patch #2 (time-clock.diff):' Patch #2 (time-clock.diff): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file examples/python/readSBML.py + unzip -n /builddir/build/SOURCES/libSBML-5.18.0-render-src.zip Archive: /builddir/build/SOURCES/libSBML-5.18.0-render-src.zip + iconv -f latin1 -t utf8 NEWS.txt + touch -r NEWS.txt t + mv t NEWS.txt + find docs/src/filters -type f -name '*.py' -exec pathfix.py -pn -i /usr/bin/python3 '{}' ';' docs/src/filters/doc-filter-python.py: updating docs/src/filters/doc-filter-c.py: updating docs/src/filters/doc-filter-csharp.py: updating + grep -e 'This file was automatically generated by SWIG' -r . -l + xargs rm + mkdir build-docs ++ ls -1 ++ grep -v build-docs + cp -a AUTHORS.txt CMakeLists.txt COPYING.html COPYING.txt FUNDING.txt LICENSE.html LICENSE.txt Makefile.in NEWS.txt OLD_NEWS.txt README-extension.txt README.txt VERSION.txt VERSION_PACKAGES.ac acinclude.m4 aclocal.m4 cmake_uninstall.cmake.in common.cmake comp-package.cmake config configure configure.ac docs examples fbc-package.cmake groups-package.cmake l3v2extendedmath-package.cmake layout-package.cmake libsbml.spec.in macosx multi-package.cmake qual-package.cmake render-package.cmake src build-docs/ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.b4qosS + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + mkdir -p build + pushd build ~/build/BUILD/libSBML-5.18.0-Source/build ~/build/BUILD/libSBML-5.18.0-Source + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ python3-config --abiflags ++ python3-config --abiflags + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.9 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.9.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_USE_DYNAMIC_LOOKUP:BOOL=ON -DWITH_PERL:BOOL=ON -DPERL_EXECUTABLE:FILEPATH=/usr/bin/perl -DPERL_INCLUDE_PATH:PATH=/usr/lib64/perl5/CORE -DPERL_LIBRARY:FILEPATH=/usr/lib64/libperl.so -DWITH_RUBY:BOOL=ON -DRUBY_SITEARCH_DIR:PATH=/usr/local/lib64/ruby/site_ruby -DRUBY_SITELIB_DIR:PATH=/usr/local/share/ruby/site_ruby -DRUBY_VENDORARCH_DIR:PATH=/usr/lib64/ruby/vendor_ruby -DRUBY_VENDORLIB_DIR:PATH=/usr/share/ruby/vendor_ruby -DRUBY_HAS_VENDOR_RUBY:BOOL=ON -DWITH_JAVA:BOOL=ON -DWITH_JAVASCRIPT:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CHECK=ON -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON .. -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake/Modules/CMakeTestCompilerCommon.cmake:13 (message): Ignored CHECK_PASS without CHECK_START Call Stack (most recent call first): /usr/share/cmake/Modules/CMakeTestCCompiler.cmake:66 (PrintTestCompilerResult) CMakeLists.txt:52 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "4.0.0") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Performing Test CHECK_CHECK_TEST -- Performing Test CHECK_CHECK_TEST - Success -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found JNI: /usr/lib/jvm/java/jre/lib/riscv64/libjawt.so -- Found Java: /usr/bin/java (found version "1.8.0.212") found components: Development -- Found PythonInterp: /usr/bin/python3 (found version "3.9") -- Found Perl: /usr/bin/perl (found version "5.30.2") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.30.2") -- Found PythonLibs: /usr/lib64/libpython3.9.so (found version "3.9.0b1") -- Found Ruby: /usr/bin/ruby (found version "2.7.1") -- ---------------------------------------------------------------------- libSBML version 5.18.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/Software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'fedora-riscv-1.gcc144.osuosl.org' host type = Linux host operating system = Linux 5.5.0-0.rc5.git0.1.1.riscv64.fc32.riscv64 host CPU architecture = riscv64 General build flags: CC = /usr/bin/cc CXX = /usr/bin/c++ CPPFLAGS = -DLINUX CFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 4.0.0) -- Using Java = /usr/bin/java -- Using Python = /usr/bin/python3 -- Using Perl = /usr/bin/perl -- Using Ruby = /usr/bin/ruby -- Using R = /usr/bin/R -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'comp' package = ON -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_SKIP_INSTALL_RPATH CSHARP_COMPILER INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libSBML-5.18.0-Source/build + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/libSBML-5.18.0-Source -B/builddir/build/BUILD/libSBML-5.18.0-Source/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.18.0-Source/build/CMakeFiles /builddir/build/BUILD/libSBML-5.18.0-Source/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/depend /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.18.0-Source/build 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Scanning dependencies of target binding_perl_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_swig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_swig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_swig.dir/depend.internal". 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Scanning dependencies of target binding_java_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/CMakeFiles/sbml.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/CMakeFiles/sbml.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/CMakeFiles/sbml.dir/depend.internal". 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Scanning dependencies of target sbml-static make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:313:3: note: in expansion of macro 'COMP_CREATE_NS' 313 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:454:3: note: in expansion of macro 'COMP_CREATE_NS' 454 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:313:3: note: in expansion of macro 'COMP_CREATE_NS' 313 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:454:3: note: in expansion of macro 'COMP_CREATE_NS' 454 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 0%] Swig Java source cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="--define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DWITH_DOXYGEN="OFF" -DLIB_NAME="" -P /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/swig-binding.cmake make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' Swig: Java Bindings make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Built target binding_java_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:400:3: note: in expansion of macro 'COMP_CREATE_NS' 400 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:541:3: note: in expansion of macro 'COMP_CREATE_NS' 541 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:400:3: note: in expansion of macro 'COMP_CREATE_NS' 400 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:541:3: note: in expansion of macro 'COMP_CREATE_NS' 541 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:170:7: note: in expansion of macro 'COMP_CREATE_NS' 170 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:373:3: note: in expansion of macro 'COMP_CREATE_NS' 373 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:447:3: note: in expansion of macro 'COMP_CREATE_NS' 447 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:554:5: note: in expansion of macro 'COMP_CREATE_NS' 554 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:170:7: note: in expansion of macro 'COMP_CREATE_NS' 170 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:373:3: note: in expansion of macro 'COMP_CREATE_NS' 373 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:447:3: note: in expansion of macro 'COMP_CREATE_NS' 447 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:554:5: note: in expansion of macro 'COMP_CREATE_NS' 554 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 0%] Swig Perl bindings source cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/../swig/swigdoc.py --language perl --top /builddir/build/BUILD/libSBML-5.18.0-Source --master /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/LibSBML.pod --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/../swig/ -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -c++ -perl5 -proxy -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/LibSBML_wrap.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/LibSBML.i make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLInputStream.h:236: Warning 314: 'next' is a perl keyword /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.h:811: Warning 509: Overloaded method SBase::getAncestorOfType(int,std::string const &) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.h:859: Warning 509: as it is shadowed by SBase::getAncestorOfType(int,std::string const) const. /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:339: Warning 509: Overloaded method GraphicalPrimitive2D::setFillRule(FillRule_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:323: Warning 509: as it is shadowed by GraphicalPrimitive2D::setFillRule(GraphicalPrimitive2D::FILL_RULE). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.h:384: Warning 509: Overloaded method GradientBase::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.h:368: Warning 509: as it is shadowed by GradientBase::setSpreadMethod(GradientBase::SPREADMETHOD). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:443: Warning 509: Overloaded method Text::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:439: Warning 509: as it is shadowed by Text::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:481: Warning 509: Overloaded method Text::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:476: Warning 509: as it is shadowed by Text::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:517: Warning 509: Overloaded method Text::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:512: Warning 509: as it is shadowed by Text::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:554: Warning 509: Overloaded method Text::setVTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:549: Warning 509: as it is shadowed by Text::setVTextAnchor(VTextAnchor_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:532: Warning 509: Overloaded method RenderGroup::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:528: Warning 509: as it is shadowed by RenderGroup::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:570: Warning 509: Overloaded method RenderGroup::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:565: Warning 509: as it is shadowed by RenderGroup::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:607: Warning 509: Overloaded method RenderGroup::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:602: Warning 509: as it is shadowed by RenderGroup::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:679: Warning 509: Overloaded method RenderGroup::setVTextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:639: Warning 509: as it is shadowed by RenderGroup::setVTextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:682: Warning 509: Overloaded method RenderGroup::setVtextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:643: Warning 509: as it is shadowed by RenderGroup::setVtextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:910: Warning 509: Overloaded method DefaultValues::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:895: Warning 509: as it is shadowed by DefaultValues::setSpreadMethod(GradientBase::SPREADMETHOD const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1141: Warning 509: Overloaded method DefaultValues::setFillRule(FillRule_t) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1125: Warning 509: as it is shadowed by DefaultValues::setFillRule(GraphicalPrimitive2D::FILL_RULE const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1261: Warning 509: Overloaded method DefaultValues::setFontWeight(FontWeight_t) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1245: Warning 509: as it is shadowed by DefaultValues::setFontWeight(Text::FONT_WEIGHT const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1309: Warning 509: Overloaded method DefaultValues::setFontStyle(FontStyle_t) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1293: Warning 509: as it is shadowed by DefaultValues::setFontStyle(Text::FONT_STYLE const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1357: Warning 509: Overloaded method DefaultValues::setTextAnchor(HTextAnchor_t) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1341: Warning 509: as it is shadowed by DefaultValues::setTextAnchor(Text::TEXT_ANCHOR const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1405: Warning 509: Overloaded method DefaultValues::setVTextAnchor(VTextAnchor_t) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1389: Warning 509: as it is shadowed by DefaultValues::setVTextAnchor(Text::TEXT_ANCHOR const). make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Built target binding_perl_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/depend.internal". Scanning dependencies of target binding_python_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:162:5: note: in expansion of macro 'COMP_CREATE_NS' 162 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend.internal". Scanning dependencies of target binding_ruby_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:155:5: note: in expansion of macro 'COMP_CREATE_NS' 155 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:155:5: note: in expansion of macro 'COMP_CREATE_NS' 155 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:162:5: note: in expansion of macro 'COMP_CREATE_NS' 162 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:154:5: note: in expansion of macro 'COMP_CREATE_NS' 154 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:118:5: note: in expansion of macro 'COMP_CREATE_NS' 118 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:155:5: note: in expansion of macro 'COMP_CREATE_NS' 155 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:155:5: note: in expansion of macro 'COMP_CREATE_NS' 155 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:154:5: note: in expansion of macro 'COMP_CREATE_NS' 154 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:154:5: note: in expansion of macro 'COMP_CREATE_NS' 154 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:118:5: note: in expansion of macro 'COMP_CREATE_NS' 118 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:154:5: note: in expansion of macro 'COMP_CREATE_NS' 154 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Swig Ruby source cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig/ -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -c++ -ruby -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/libsbml.i make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig/render-package.i:102: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig/render-package.i:102: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig/render-package.i:103: Warning 801: Wrong class name (corrected to `Int_array') /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig/render-package.i:103: Warning 801: Wrong class name (corrected to `Int_array') make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Built target binding_ruby_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/depend.internal". Scanning dependencies of target binding_r_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:552:5: note: in expansion of macro 'COMP_CREATE_NS' 552 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:671:7: note: in expansion of macro 'COMP_CREATE_NS' 671 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:682:7: note: in expansion of macro 'COMP_CREATE_NS' 682 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:552:5: note: in expansion of macro 'COMP_CREATE_NS' 552 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:671:7: note: in expansion of macro 'COMP_CREATE_NS' 671 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:682:7: note: in expansion of macro 'COMP_CREATE_NS' 682 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:497:3: note: in expansion of macro 'COMP_CREATE_NS' 497 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:497:3: note: in expansion of macro 'COMP_CREATE_NS' 497 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Swig: R Bindings cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DLIBSBML_REMOVE_WRAPPERS=OFF -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r/swig-binding.cmake cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML.R" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r/patch-swig-file.cmake -- Patched libSBML.R cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r/patch-swig-file.cmake -- Patched libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLInputStream.h:236: Warning 314: 'next' is a R keyword, renaming to '_next' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Built target binding_r_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/depend.internal". Scanning dependencies of target binding_java_jar make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:35: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:285:3: note: in expansion of macro 'COMP_CREATE_NS' 285 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:35: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:285:3: note: in expansion of macro 'COMP_CREATE_NS' 285 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:35: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:324:3: note: in expansion of macro 'COMP_CREATE_NS' 324 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:35: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:324:3: note: in expansion of macro 'COMP_CREATE_NS' 324 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:145, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:34: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:197:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 197 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:833:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 833 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1098:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1098 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1278:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1278 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1485:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1485 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:148:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 148 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:446:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 446 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:145, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:34: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:197:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 197 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:833:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 833 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1098:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1098 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1278:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1278 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1485:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1485 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:148:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 148 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:446:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 446 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:300:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 300 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:337:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 337 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:374:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 374 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:105, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:943:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 943 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:980:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 980 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1017:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1017 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1113:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1113 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1121:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1121 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1129:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1129 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1137:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1137 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:300:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 300 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:337:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 337 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:374:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 374 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:312:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 312 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:349:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 349 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:386:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 386 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:105, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:943:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 943 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:980:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 980 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1017:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1017 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1113:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1113 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1121:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1121 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1129:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1129 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1137:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1137 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:126, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1178:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1178 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:312:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 312 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:349:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 349 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:386:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 386 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:93, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1100:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1100 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1196:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1196 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:126, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1178:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1178 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:350:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 350 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:699:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 699 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:93, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1100:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1100 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1196:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1196 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:89, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1098:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1098 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1194:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1194 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:350:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 350 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:699:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 699 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:96, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:212:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 212 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:227:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 227 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:242:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 242 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:927:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 927 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:89, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1098:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1098 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1194:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1194 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Swig Python source cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.18.0-Source --master /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/pydoc-doxygen.i --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/generate-class-name-list.py /builddir/build/BUILD/libSBML-5.18.0-Source/src > /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/class-list.txt cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/generate-converters-list.py /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/class-list.txt > /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/libsbml-converters.txt cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py -f /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/pydoc-doxygen.i -o /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/pydoc-normal.i -i /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../../../docs/src/common-text -g /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../../../docs/src/common-graphics Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-doxygen.i pydoc.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -DGENERATING_DOCS -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-doxygen.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename libsbml.py libsbml-doxygen.py cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-normal.i pydoc.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-normal.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python" -DVERSION="5.18.0" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/add_version.cmake cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python" -DPYTHON_USE_API2_WARNINGS="OFF" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/patch-python.cmake -- Patching Python wrapper make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py:121: DeprecationWarning: the formatter module is deprecated from formatter import NullWriter, AbstractFormatter /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' Python: Add Version to generated file make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Built target binding_python_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:96, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:212:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 212 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:227:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 227 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:242:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 242 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:927:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 927 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.h:134, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:472:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 472 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1374:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1374 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1493:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1493 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.h:134, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:472:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 472 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1374:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1374 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1493:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1493 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:52, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:233:5: note: in expansion of macro 'GROUPS_CREATE_NS' 233 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml 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Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:247:5: note: in expansion of macro 'GROUPS_CREATE_NS' 247 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:307:3: note: in expansion of macro 'GROUPS_CREATE_NS' 307 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.h:164, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:449:5: note: in expansion of macro 'GROUPS_CREATE_NS' 449 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:100, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:347:5: note: in expansion of macro 'GROUPS_CREATE_NS' 347 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:458:3: note: in expansion of macro 'GROUPS_CREATE_NS' 458 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:52, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:233:5: note: in expansion of macro 'GROUPS_CREATE_NS' 233 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.h:164, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:449:5: note: in expansion of macro 'GROUPS_CREATE_NS' 449 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:247:5: note: in expansion of macro 'GROUPS_CREATE_NS' 247 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:307:3: note: in expansion of macro 'GROUPS_CREATE_NS' 307 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:100, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:347:5: note: in expansion of macro 'GROUPS_CREATE_NS' 347 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:458:3: note: in expansion of macro 'GROUPS_CREATE_NS' 458 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building: libsbml.jar cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java && /usr/bin/cmake -E make_directory /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/test cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java && /usr/bin/cmake -DJava_JAVAC_EXECUTABLE="/usr/bin/javac" -DJava_JAR_EXECUTABLE="/usr/bin/jar" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java" -DFILE_SEP=":" -DPATH_SEP=/ -DCOMPATIBILIY=1.6 -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java/compile-native-files.cmake added manifest adding: org/sbml/libsbml/ASTBasePlugin.class(in = 8891) (out= 2720)(deflated 69%) adding: org/sbml/libsbml/ASTNode.class(in = 16345) (out= 4818)(deflated 70%) adding: org/sbml/libsbml/ASTNodeList.class(in = 1591) (out= 757)(deflated 52%) adding: org/sbml/libsbml/ASTNodeValues_t.class(in = 2940) (out= 1111)(deflated 62%) adding: org/sbml/libsbml/AlgebraicRule.class(in = 1833) (out= 885)(deflated 51%) adding: org/sbml/libsbml/AssignmentRule.class(in = 2073) (out= 965)(deflated 53%) adding: org/sbml/libsbml/Association.class(in = 5587) (out= 1912)(deflated 65%) adding: org/sbml/libsbml/BindingSiteSpeciesType.class(in = 3131) (out= 1197)(deflated 61%) adding: org/sbml/libsbml/BoundingBox.class(in = 7249) (out= 2372)(deflated 67%) adding: org/sbml/libsbml/CVTerm.class(in = 4773) (out= 1723)(deflated 63%) adding: org/sbml/libsbml/CVTermList.class(in = 1573) (out= 755)(deflated 52%) adding: org/sbml/libsbml/Callback.class(in = 1680) (out= 860)(deflated 48%) adding: org/sbml/libsbml/CallbackRegistry.class(in = 1767) (out= 813)(deflated 53%) adding: org/sbml/libsbml/CobraToFbcConverter.class(in = 2314) (out= 995)(deflated 57%) adding: org/sbml/libsbml/ColorDefinition.class(in = 7410) (out= 2312)(deflated 68%) adding: org/sbml/libsbml/CompBase.class(in = 1541) (out= 779)(deflated 49%) adding: org/sbml/libsbml/CompExtension.class(in = 5884) (out= 2365)(deflated 59%) adding: org/sbml/libsbml/CompFlatteningConverter.class(in = 2329) (out= 980)(deflated 57%) adding: org/sbml/libsbml/CompModelPlugin.class(in = 6844) (out= 2192)(deflated 67%) adding: org/sbml/libsbml/CompPkgNamespaces.class(in = 2403) (out= 1053)(deflated 56%) adding: org/sbml/libsbml/CompSBMLDocumentPlugin.class(in = 8041) (out= 2290)(deflated 71%) adding: org/sbml/libsbml/CompSBasePlugin.class(in = 5677) (out= 1830)(deflated 67%) adding: org/sbml/libsbml/Compartment.class(in = 6893) (out= 2206)(deflated 67%) adding: org/sbml/libsbml/CompartmentGlyph.class(in = 4976) (out= 1682)(deflated 66%) adding: org/sbml/libsbml/CompartmentReference.class(in = 4562) (out= 1550)(deflated 66%) adding: org/sbml/libsbml/CompartmentType.class(in = 3015) (out= 1190)(deflated 60%) adding: org/sbml/libsbml/Constraint.class(in = 4385) (out= 1592)(deflated 63%) adding: org/sbml/libsbml/ConversionOption.class(in = 5628) (out= 1689)(deflated 69%) adding: org/sbml/libsbml/ConversionProperties.class(in = 8189) (out= 2121)(deflated 74%) adding: org/sbml/libsbml/CubicBezier.class(in = 6224) (out= 2042)(deflated 67%) adding: org/sbml/libsbml/Curve.class(in = 4519) (out= 1743)(deflated 61%) adding: org/sbml/libsbml/Date.class(in = 4822) (out= 1841)(deflated 61%) adding: org/sbml/libsbml/DateList.class(in = 1537) (out= 753)(deflated 51%) adding: org/sbml/libsbml/DefaultTerm.class(in = 3246) (out= 1294)(deflated 60%) adding: org/sbml/libsbml/DefaultValues.class(in = 17811) (out= 4226)(deflated 76%) adding: org/sbml/libsbml/DefinitionURLRegistry.class(in = 1903) (out= 864)(deflated 54%) adding: org/sbml/libsbml/Delay.class(in = 3652) (out= 1460)(deflated 60%) adding: org/sbml/libsbml/Deletion.class(in = 3160) (out= 1278)(deflated 59%) adding: org/sbml/libsbml/Dimensions.class(in = 5207) (out= 1873)(deflated 64%) adding: org/sbml/libsbml/ElementFilter.class(in = 1714) (out= 850)(deflated 50%) adding: org/sbml/libsbml/Ellipse.class(in = 9268) (out= 2436)(deflated 73%) adding: org/sbml/libsbml/Event.class(in = 8756) (out= 2773)(deflated 68%) adding: org/sbml/libsbml/EventAssignment.class(in = 4839) (out= 1693)(deflated 65%) adding: org/sbml/libsbml/ExternalModelDefinition.class(in = 5102) (out= 1661)(deflated 67%) adding: org/sbml/libsbml/FbcAnd.class(in = 5110) (out= 1848)(deflated 63%) adding: org/sbml/libsbml/FbcAssociation.class(in = 4373) (out= 1525)(deflated 65%) adding: org/sbml/libsbml/FbcExtension.class(in = 6316) (out= 2551)(deflated 59%) adding: org/sbml/libsbml/FbcModelPlugin.class(in = 12134) (out= 3293)(deflated 72%) adding: org/sbml/libsbml/FbcOr.class(in = 5070) (out= 1834)(deflated 63%) adding: org/sbml/libsbml/FbcPkgNamespaces.class(in = 2385) (out= 1052)(deflated 55%) adding: org/sbml/libsbml/FbcReactionPlugin.class(in = 6091) (out= 1859)(deflated 69%) adding: org/sbml/libsbml/FbcSBMLDocumentPlugin.class(in = 1960) (out= 906)(deflated 53%) adding: org/sbml/libsbml/FbcSpeciesPlugin.class(in = 4767) (out= 1599)(deflated 66%) adding: org/sbml/libsbml/FbcToCobraConverter.class(in = 2144) (out= 946)(deflated 55%) adding: org/sbml/libsbml/FbcV1ToV2Converter.class(in = 2278) (out= 984)(deflated 56%) adding: org/sbml/libsbml/FbcV2ToV1Converter.class(in = 2128) (out= 946)(deflated 55%) adding: org/sbml/libsbml/FluxBound.class(in = 5100) (out= 1783)(deflated 65%) adding: org/sbml/libsbml/FluxObjective.class(in = 4785) (out= 1663)(deflated 65%) adding: org/sbml/libsbml/FunctionDefinition.class(in = 4850) (out= 1641)(deflated 66%) adding: org/sbml/libsbml/FunctionTerm.class(in = 4233) (out= 1569)(deflated 62%) adding: org/sbml/libsbml/GeneAssociation.class(in = 4684) (out= 1627)(deflated 65%) adding: org/sbml/libsbml/GeneProduct.class(in = 4633) (out= 1638)(deflated 64%) adding: org/sbml/libsbml/GeneProductAssociation.class(in = 6209) (out= 1971)(deflated 68%) adding: org/sbml/libsbml/GeneProductRef.class(in = 4689) (out= 1625)(deflated 65%) adding: org/sbml/libsbml/GeneralGlyph.class(in = 8733) (out= 2706)(deflated 69%) adding: org/sbml/libsbml/GlobalRenderInformation.class(in = 6846) (out= 2092)(deflated 69%) adding: org/sbml/libsbml/GlobalStyle.class(in = 3024) (out= 1207)(deflated 60%) adding: org/sbml/libsbml/GradientBase.class(in = 6242) (out= 2073)(deflated 66%) adding: org/sbml/libsbml/GradientStop.class(in = 4471) (out= 1632)(deflated 63%) adding: org/sbml/libsbml/GraphicalObject.class(in = 6884) (out= 2188)(deflated 68%) adding: org/sbml/libsbml/GraphicalPrimitive1D.class(in = 6101) (out= 1942)(deflated 68%) adding: org/sbml/libsbml/GraphicalPrimitive2D.class(in = 4299) (out= 1482)(deflated 65%) adding: org/sbml/libsbml/Group.class(in = 6215) (out= 2204)(deflated 64%) adding: org/sbml/libsbml/GroupsExtension.class(in = 4897) (out= 1972)(deflated 59%) adding: org/sbml/libsbml/GroupsModelPlugin.class(in = 4856) (out= 1681)(deflated 65%) adding: org/sbml/libsbml/GroupsPkgNamespaces.class(in = 2439) (out= 1055)(deflated 56%) adding: org/sbml/libsbml/ISBMLExtensionNamespaces.class(in = 1574) (out= 727)(deflated 53%) adding: org/sbml/libsbml/IdList.class(in = 1894) (out= 873)(deflated 53%) adding: org/sbml/libsbml/IdentifierTransformer.class(in = 1827) (out= 859)(deflated 52%) adding: org/sbml/libsbml/Image.class(in = 7038) (out= 2336)(deflated 66%) adding: org/sbml/libsbml/InSpeciesTypeBond.class(in = 4909) (out= 1641)(deflated 66%) adding: org/sbml/libsbml/InitialAssignment.class(in = 4899) (out= 1709)(deflated 65%) adding: org/sbml/libsbml/Input.class(in = 5282) (out= 1841)(deflated 65%) adding: org/sbml/libsbml/IntraSpeciesReaction.class(in = 3069) (out= 1191)(deflated 61%) adding: org/sbml/libsbml/KineticLaw.class(in = 9514) (out= 2896)(deflated 69%) adding: org/sbml/libsbml/L3ParserSettings.class(in = 5651) (out= 1830)(deflated 67%) adding: org/sbml/libsbml/L3v2extendedmathASTPlugin.class(in = 4314) (out= 1465)(deflated 66%) adding: org/sbml/libsbml/L3v2extendedmathExtension.class(in = 4131) (out= 1456)(deflated 64%) adding: org/sbml/libsbml/L3v2extendedmathPkgNamespaces.class(in = 2619) (out= 1070)(deflated 59%) adding: org/sbml/libsbml/L3v2extendedmathSBMLDocumentPlugin.class(in = 2181) (out= 925)(deflated 57%) adding: org/sbml/libsbml/Layout.class(in = 14495) (out= 4010)(deflated 72%) adding: org/sbml/libsbml/LayoutExtension.class(in = 7766) (out= 2945)(deflated 62%) adding: org/sbml/libsbml/LayoutModelPlugin.class(in = 3890) (out= 1385)(deflated 64%) adding: org/sbml/libsbml/LayoutPkgNamespaces.class(in = 2439) (out= 1055)(deflated 56%) adding: org/sbml/libsbml/LayoutSpeciesReferencePlugin.class(in = 1720) (out= 803)(deflated 53%) adding: org/sbml/libsbml/LineEnding.class(in = 6780) (out= 2267)(deflated 66%) adding: org/sbml/libsbml/LineSegment.class(in = 5596) (out= 1960)(deflated 64%) adding: org/sbml/libsbml/LinearGradient.class(in = 8341) (out= 2297)(deflated 72%) adding: org/sbml/libsbml/ListOf.class(in = 5126) (out= 1877)(deflated 63%) adding: org/sbml/libsbml/ListOfColorDefinitions.class(in = 4770) (out= 1595)(deflated 66%) adding: org/sbml/libsbml/ListOfCompartmentGlyphs.class(in = 3662) (out= 1339)(deflated 63%) adding: org/sbml/libsbml/ListOfCompartmentReferences.class(in = 3704) (out= 1302)(deflated 64%) adding: org/sbml/libsbml/ListOfCompartmentTypes.class(in = 3092) (out= 1174)(deflated 62%) adding: org/sbml/libsbml/ListOfCompartments.class(in = 3000) (out= 1171)(deflated 60%) adding: org/sbml/libsbml/ListOfConstraints.class(in = 2593) (out= 1092)(deflated 57%) adding: org/sbml/libsbml/ListOfCurveElements.class(in = 4949) (out= 1704)(deflated 65%) adding: org/sbml/libsbml/ListOfDeletions.class(in = 3134) (out= 1223)(deflated 60%) adding: org/sbml/libsbml/ListOfDrawables.class(in = 5551) (out= 1910)(deflated 65%) adding: org/sbml/libsbml/ListOfEventAssignments.class(in = 3347) (out= 1251)(deflated 62%) adding: org/sbml/libsbml/ListOfEvents.class(in = 2862) (out= 1162)(deflated 59%) adding: org/sbml/libsbml/ListOfExternalModelDefinitions.class(in = 3509) (out= 1241)(deflated 64%) adding: org/sbml/libsbml/ListOfFbcAssociations.class(in = 4565) (out= 1587)(deflated 65%) adding: org/sbml/libsbml/ListOfFluxBounds.class(in = 3297) (out= 1264)(deflated 61%) adding: org/sbml/libsbml/ListOfFluxObjectives.class(in = 4116) (out= 1437)(deflated 65%) adding: org/sbml/libsbml/ListOfFunctionDefinitions.class(in = 3161) (out= 1176)(deflated 62%) adding: org/sbml/libsbml/ListOfFunctionTerms.class(in = 4376) (out= 1515)(deflated 65%) adding: org/sbml/libsbml/ListOfGeneAssociations.class(in = 3453) (out= 1271)(deflated 63%) adding: org/sbml/libsbml/ListOfGeneProducts.class(in = 4034) (out= 1436)(deflated 64%) adding: org/sbml/libsbml/ListOfGlobalRenderInformation.class(in = 9180) (out= 2539)(deflated 72%) adding: org/sbml/libsbml/ListOfGlobalStyles.class(in = 4590) (out= 1593)(deflated 65%) adding: org/sbml/libsbml/ListOfGradientDefinitions.class(in = 5116) (out= 1693)(deflated 66%) adding: org/sbml/libsbml/ListOfGradientStops.class(in = 4668) (out= 1605)(deflated 65%) adding: org/sbml/libsbml/ListOfGraphicalObjects.class(in = 3791) (out= 1380)(deflated 63%) adding: org/sbml/libsbml/ListOfGroups.class(in = 3950) (out= 1464)(deflated 62%) adding: org/sbml/libsbml/ListOfInSpeciesTypeBonds.class(in = 3623) (out= 1301)(deflated 64%) adding: org/sbml/libsbml/ListOfInitialAssignments.class(in = 3395) (out= 1254)(deflated 63%) adding: org/sbml/libsbml/ListOfInputs.class(in = 3346) (out= 1296)(deflated 61%) adding: org/sbml/libsbml/ListOfLayouts.class(in = 3597) (out= 1374)(deflated 61%) adding: org/sbml/libsbml/ListOfLineEndings.class(in = 4721) (out= 1635)(deflated 65%) adding: org/sbml/libsbml/ListOfLineSegments.class(in = 3152) (out= 1262)(deflated 59%) adding: org/sbml/libsbml/ListOfLocalParameters.class(in = 3697) (out= 1313)(deflated 64%) adding: org/sbml/libsbml/ListOfLocalRenderInformation.class(in = 8521) (out= 2397)(deflated 71%) adding: org/sbml/libsbml/ListOfLocalStyles.class(in = 4545) (out= 1591)(deflated 64%) adding: org/sbml/libsbml/ListOfMembers.class(in = 5114) (out= 1763)(deflated 65%) adding: org/sbml/libsbml/ListOfModelDefinitions.class(in = 3309) (out= 1228)(deflated 62%) adding: org/sbml/libsbml/ListOfMultiSpeciesTypes.class(in = 3543) (out= 1294)(deflated 63%) adding: org/sbml/libsbml/ListOfObjectives.class(in = 5192) (out= 1719)(deflated 66%) adding: org/sbml/libsbml/ListOfOutputs.class(in = 3373) (out= 1296)(deflated 61%) adding: org/sbml/libsbml/ListOfOutwardBindingSites.class(in = 3650) (out= 1299)(deflated 64%) adding: org/sbml/libsbml/ListOfParameters.class(in = 2954) (out= 1166)(deflated 60%) adding: org/sbml/libsbml/ListOfPorts.class(in = 3278) (out= 1301)(deflated 60%) adding: org/sbml/libsbml/ListOfPossibleSpeciesFeatureValues.class(in = 3893) (out= 1314)(deflated 66%) adding: org/sbml/libsbml/ListOfQualitativeSpecies.class(in = 3361) (out= 1233)(deflated 63%) adding: org/sbml/libsbml/ListOfReactionGlyphs.class(in = 3581) (out= 1335)(deflated 62%) adding: org/sbml/libsbml/ListOfReactions.class(in = 2878) (out= 1152)(deflated 59%) adding: org/sbml/libsbml/ListOfReferenceGlyphs.class(in = 3608) (out= 1341)(deflated 62%) adding: org/sbml/libsbml/ListOfReplacedElements.class(in = 2905) (out= 1164)(deflated 59%) adding: org/sbml/libsbml/ListOfRules.class(in = 2943) (out= 1188)(deflated 59%) adding: org/sbml/libsbml/ListOfSpecies.class(in = 2888) (out= 1165)(deflated 59%) adding: org/sbml/libsbml/ListOfSpeciesFeatureTypes.class(in = 3650) (out= 1296)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesFeatureValues.class(in = 3677) (out= 1299)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesFeatures.class(in = 5453) (out= 1693)(deflated 68%) adding: org/sbml/libsbml/ListOfSpeciesGlyphs.class(in = 3554) (out= 1332)(deflated 62%) adding: org/sbml/libsbml/ListOfSpeciesReferenceGlyphs.class(in = 3797) (out= 1353)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesReferences.class(in = 3187) (out= 1200)(deflated 62%) adding: org/sbml/libsbml/ListOfSpeciesTypeComponentIndexes.class(in = 3705) (out= 1276)(deflated 65%) adding: org/sbml/libsbml/ListOfSpeciesTypeComponentMapInProducts.class(in = 4028) (out= 1318)(deflated 67%) adding: org/sbml/libsbml/ListOfSpeciesTypeInstances.class(in = 3677) (out= 1297)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesTypes.class(in = 3000) (out= 1168)(deflated 61%) adding: org/sbml/libsbml/ListOfSubmodels.class(in = 3134) (out= 1224)(deflated 60%) adding: org/sbml/libsbml/ListOfTextGlyphs.class(in = 3473) (out= 1332)(deflated 61%) adding: org/sbml/libsbml/ListOfTransitions.class(in = 3327) (out= 1258)(deflated 62%) adding: org/sbml/libsbml/ListOfUnitDefinitions.class(in = 3323) (out= 1247)(deflated 62%) adding: org/sbml/libsbml/ListOfUnits.class(in = 2479) (out= 1085)(deflated 56%) adding: org/sbml/libsbml/LocalParameter.class(in = 3273) (out= 1250)(deflated 61%) adding: org/sbml/libsbml/LocalRenderInformation.class(in = 6927) (out= 2104)(deflated 69%) adding: org/sbml/libsbml/LocalStyle.class(in = 4169) (out= 1563)(deflated 62%) adding: org/sbml/libsbml/MathFilter.class(in = 1748) (out= 892)(deflated 48%) adding: org/sbml/libsbml/Member.class(in = 4572) (out= 1690)(deflated 63%) adding: org/sbml/libsbml/Model.class(in = 35601) (out= 9224)(deflated 74%) adding: org/sbml/libsbml/ModelCreator.class(in = 5096) (out= 1718)(deflated 66%) adding: org/sbml/libsbml/ModelCreatorList.class(in = 1681) (out= 761)(deflated 54%) adding: org/sbml/libsbml/ModelDefinition.class(in = 2707) (out= 1111)(deflated 58%) adding: org/sbml/libsbml/ModelHistory.class(in = 4260) (out= 1533)(deflated 64%) adding: org/sbml/libsbml/ModifierSpeciesReference.class(in = 2183) (out= 967)(deflated 55%) adding: org/sbml/libsbml/MultiASTPlugin.class(in = 5653) (out= 1794)(deflated 68%) adding: org/sbml/libsbml/MultiCompartmentPlugin.class(in = 5989) (out= 1812)(deflated 69%) adding: org/sbml/libsbml/MultiExtension.class(in = 7320) (out= 2844)(deflated 61%) adding: org/sbml/libsbml/MultiListOfReactionsPlugin.class(in = 2446) (out= 1015)(deflated 58%) adding: org/sbml/libsbml/MultiModelPlugin.class(in = 4882) (out= 1635)(deflated 66%) adding: org/sbml/libsbml/MultiPkgNamespaces.class(in = 2421) (out= 1054)(deflated 56%) adding: org/sbml/libsbml/MultiSBMLDocumentPlugin.class(in = 1994) (out= 908)(deflated 54%) adding: org/sbml/libsbml/MultiSimpleSpeciesReferencePlugin.class(in = 3873) (out= 1288)(deflated 66%) adding: org/sbml/libsbml/MultiSpeciesPlugin.class(in = 8318) (out= 2327)(deflated 72%) adding: org/sbml/libsbml/MultiSpeciesReferencePlugin.class(in = 5222) (out= 1581)(deflated 69%) adding: org/sbml/libsbml/MultiSpeciesType.class(in = 11919) (out= 3143)(deflated 73%) adding: org/sbml/libsbml/OFStream.class(in = 1741) (out= 827)(deflated 52%) adding: org/sbml/libsbml/OStream.class(in = 1457) (out= 800)(deflated 45%) adding: org/sbml/libsbml/OStringStream.class(in = 1283) (out= 680)(deflated 46%) adding: org/sbml/libsbml/Objective.class(in = 6124) (out= 2054)(deflated 66%) adding: org/sbml/libsbml/Output.class(in = 4964) (out= 1752)(deflated 64%) adding: org/sbml/libsbml/OutwardBindingSite.class(in = 5099) (out= 1688)(deflated 66%) adding: org/sbml/libsbml/Parameter.class(in = 4878) (out= 1743)(deflated 64%) adding: org/sbml/libsbml/Point.class(in = 5465) (out= 1965)(deflated 64%) adding: org/sbml/libsbml/Polygon.class(in = 5278) (out= 1925)(deflated 63%) adding: org/sbml/libsbml/Port.class(in = 3665) (out= 1459)(deflated 60%) adding: org/sbml/libsbml/PossibleSpeciesFeatureValue.class(in = 4836) (out= 1575)(deflated 67%) adding: org/sbml/libsbml/Priority.class(in = 3365) (out= 1351)(deflated 59%) adding: org/sbml/libsbml/QualExtension.class(in = 5334) (out= 2186)(deflated 59%) adding: org/sbml/libsbml/QualModelPlugin.class(in = 6593) (out= 2030)(deflated 69%) adding: org/sbml/libsbml/QualPkgNamespaces.class(in = 2403) (out= 1053)(deflated 56%) adding: org/sbml/libsbml/QualitativeSpecies.class(in = 5893) (out= 1864)(deflated 68%) adding: org/sbml/libsbml/RDFAnnotationParser.class(in = 5017) (out= 1521)(deflated 69%) adding: org/sbml/libsbml/RadialGradient.class(in = 8933) (out= 2424)(deflated 72%) adding: org/sbml/libsbml/RateRule.class(in = 1989) (out= 958)(deflated 51%) adding: org/sbml/libsbml/Reaction.class(in = 11763) (out= 3310)(deflated 71%) adding: org/sbml/libsbml/ReactionGlyph.class(in = 7761) (out= 2462)(deflated 68%) adding: org/sbml/libsbml/Rectangle.class(in = 9619) (out= 2671)(deflated 72%) adding: org/sbml/libsbml/ReferenceGlyph.class(in = 6368) (out= 2145)(deflated 66%) adding: org/sbml/libsbml/RelAbsVector.class(in = 3786) (out= 1334)(deflated 64%) adding: org/sbml/libsbml/RenderCubicBezier.class(in = 9618) (out= 2417)(deflated 74%) adding: org/sbml/libsbml/RenderCurve.class(in = 6765) (out= 2275)(deflated 66%) adding: org/sbml/libsbml/RenderExtension.class(in = 7959) (out= 3062)(deflated 61%) adding: org/sbml/libsbml/RenderGraphicalObjectPlugin.class(in = 3417) (out= 1201)(deflated 64%) adding: org/sbml/libsbml/RenderGroup.class(in = 12819) (out= 3682)(deflated 71%) adding: org/sbml/libsbml/RenderInformationBase.class(in = 12839) (out= 3336)(deflated 74%) adding: org/sbml/libsbml/RenderLayoutPlugin.class(in = 5038) (out= 1625)(deflated 67%) adding: org/sbml/libsbml/RenderListOfLayoutsPlugin.class(in = 4953) (out= 1557)(deflated 68%) adding: org/sbml/libsbml/RenderPkgNamespaces.class(in = 2439) (out= 1055)(deflated 56%) adding: org/sbml/libsbml/RenderPoint.class(in = 6931) (out= 2125)(deflated 69%) adding: org/sbml/libsbml/ReplacedBy.class(in = 2711) (out= 1158)(deflated 57%) adding: org/sbml/libsbml/ReplacedElement.class(in = 4136) (out= 1482)(deflated 64%) adding: org/sbml/libsbml/Replacing.class(in = 2454) (out= 1018)(deflated 58%) adding: org/sbml/libsbml/Rule.class(in = 5603) (out= 2027)(deflated 63%) adding: org/sbml/libsbml/SBMLConstructorException.class(in = 1861) (out= 837)(deflated 55%) adding: org/sbml/libsbml/SBMLConverter.class(in = 4784) (out= 1651)(deflated 65%) adding: org/sbml/libsbml/SBMLConverterRegistry.class(in = 2188) (out= 883)(deflated 59%) adding: org/sbml/libsbml/SBMLDocument.class(in = 13286) (out= 3834)(deflated 71%) adding: org/sbml/libsbml/SBMLDocumentPlugin.class(in = 2433) (out= 1029)(deflated 57%) adding: org/sbml/libsbml/SBMLError.class(in = 2561) (out= 1018)(deflated 60%) adding: org/sbml/libsbml/SBMLErrorLog.class(in = 6193) (out= 1879)(deflated 69%) adding: org/sbml/libsbml/SBMLExtension.class(in = 5506) (out= 1814)(deflated 67%) adding: org/sbml/libsbml/SBMLExtensionException.class(in = 982) (out= 580)(deflated 40%) adding: org/sbml/libsbml/SBMLExtensionRegistry.class(in = 4984) (out= 1664)(deflated 66%) adding: org/sbml/libsbml/SBMLExternalValidator.class(in = 2954) (out= 1110)(deflated 62%) adding: org/sbml/libsbml/SBMLFileResolver.class(in = 2733) (out= 1075)(deflated 60%) adding: org/sbml/libsbml/SBMLFunctionDefinitionConverter.class(in = 2336) (out= 952)(deflated 59%) adding: org/sbml/libsbml/SBMLIdConverter.class(in = 2080) (out= 938)(deflated 54%) adding: org/sbml/libsbml/SBMLInferUnitsConverter.class(in = 2208) (out= 948)(deflated 57%) adding: org/sbml/libsbml/SBMLInitialAssignmentConverter.class(in = 2320) (out= 956)(deflated 58%) adding: org/sbml/libsbml/SBMLLevel1Version1Converter.class(in = 2272) (out= 952)(deflated 58%) adding: org/sbml/libsbml/SBMLLevelVersionConverter.class(in = 2779) (out= 1078)(deflated 61%) adding: org/sbml/libsbml/SBMLLocalParameterConverter.class(in = 2272) (out= 952)(deflated 58%) adding: org/sbml/libsbml/SBMLNamespaces.class(in = 5740) (out= 1963)(deflated 65%) adding: org/sbml/libsbml/SBMLNamespacesList.class(in = 1717) (out= 766)(deflated 55%) adding: org/sbml/libsbml/SBMLReactionConverter.class(in = 2486) (out= 1013)(deflated 59%) adding: org/sbml/libsbml/SBMLReader.class(in = 1939) (out= 958)(deflated 50%) adding: org/sbml/libsbml/SBMLResolver.class(in = 3180) (out= 1235)(deflated 61%) adding: org/sbml/libsbml/SBMLResolverRegistry.class(in = 3368) (out= 1205)(deflated 64%) adding: org/sbml/libsbml/SBMLRuleConverter.class(in = 2112) (out= 941)(deflated 55%) adding: org/sbml/libsbml/SBMLStripPackageConverter.class(in = 2660) (out= 1051)(deflated 60%) adding: org/sbml/libsbml/SBMLTransforms.class(in = 3702) (out= 1251)(deflated 66%) adding: org/sbml/libsbml/SBMLUnitsConverter.class(in = 2128) (out= 941)(deflated 55%) adding: org/sbml/libsbml/SBMLUri.class(in = 1947) (out= 907)(deflated 53%) adding: org/sbml/libsbml/SBMLValidator.class(in = 4424) (out= 1638)(deflated 62%) adding: org/sbml/libsbml/SBMLWriter.class(in = 2909) (out= 1191)(deflated 59%) adding: org/sbml/libsbml/SBO.class(in = 4172) (out= 1568)(deflated 62%) adding: org/sbml/libsbml/SBase.class(in = 19402) (out= 5520)(deflated 71%) adding: org/sbml/libsbml/SBaseExtensionPoint.class(in = 2363) (out= 960)(deflated 59%) adding: org/sbml/libsbml/SBaseList.class(in = 1555) (out= 754)(deflated 51%) adding: org/sbml/libsbml/SBasePlugin.class(in = 7122) (out= 2333)(deflated 67%) adding: org/sbml/libsbml/SBaseRef.class(in = 6427) (out= 2155)(deflated 66%) adding: org/sbml/libsbml/SWIGTYPE_p_ExpectedAttributes.class(in = 501) (out= 320)(deflated 36%) adding: org/sbml/libsbml/SWIGTYPE_p_FormulaUnitsData.class(in = 495) (out= 318)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_List.class(in = 459) (out= 309)(deflated 32%) adding: org/sbml/libsbml/SWIGTYPE_p_PrefixTransformer.class(in = 498) (out= 319)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_StringBuffer_t.class(in = 489) (out= 317)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_UnitFormulaFormatter.class(in = 507) (out= 318)(deflated 37%) adding: org/sbml/libsbml/SWIGTYPE_p_double.class(in = 465) (out= 309)(deflated 33%) adding: org/sbml/libsbml/SWIGTYPE_p_f_p_Model_p_SBMLErrorLog_p_void__int.class(in = 555) (out= 332)(deflated 40%) adding: org/sbml/libsbml/SWIGTYPE_p_int.class(in = 456) (out= 307)(deflated 32%) adding: org/sbml/libsbml/SWIGTYPE_p_packageErrorTableEntry.class(in = 513) (out= 319)(deflated 37%) adding: org/sbml/libsbml/SWIGTYPE_p_packageErrorTableEntryV2.class(in = 519) (out= 321)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__ostream.class(in = 483) (out= 315)(deflated 34%) adding: org/sbml/libsbml/SWIGTYPE_p_std__stringstream.class(in = 498) (out= 316)(deflated 36%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_ASTBasePlugin_p_t.class(in = 537) (out= 327)(deflated 39%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_XMLError_p_t.class(in = 522) (out= 323)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_std__string_t.class(in = 525) (out= 321)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_unsigned_int_t.class(in = 528) (out= 326)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_void.class(in = 459) (out= 309)(deflated 32%) adding: org/sbml/libsbml/SimpleSpeciesReference.class(in = 2764) (out= 996)(deflated 63%) adding: org/sbml/libsbml/Species.class(in = 8744) (out= 2612)(deflated 70%) adding: org/sbml/libsbml/SpeciesFeature.class(in = 7339) (out= 2274)(deflated 69%) adding: org/sbml/libsbml/SpeciesFeatureType.class(in = 6593) (out= 2020)(deflated 69%) adding: org/sbml/libsbml/SpeciesFeatureValue.class(in = 3698) (out= 1352)(deflated 63%) adding: org/sbml/libsbml/SpeciesGlyph.class(in = 4333) (out= 1541)(deflated 64%) adding: org/sbml/libsbml/SpeciesReference.class(in = 5424) (out= 1751)(deflated 67%) adding: org/sbml/libsbml/SpeciesReferenceGlyph.class(in = 7030) (out= 2233)(deflated 68%) adding: org/sbml/libsbml/SpeciesType.class(in = 2911) (out= 1184)(deflated 59%) adding: org/sbml/libsbml/SpeciesTypeComponentIndex.class(in = 5261) (out= 1670)(deflated 68%) adding: org/sbml/libsbml/SpeciesTypeComponentMapInProduct.class(in = 6092) (out= 1771)(deflated 70%) adding: org/sbml/libsbml/SpeciesTypeInstance.class(in = 5049) (out= 1652)(deflated 67%) adding: org/sbml/libsbml/StoichiometryMath.class(in = 4012) (out= 1478)(deflated 63%) adding: org/sbml/libsbml/StringSet.class(in = 1985) (out= 859)(deflated 56%) adding: org/sbml/libsbml/Style.class(in = 5745) (out= 2036)(deflated 64%) adding: org/sbml/libsbml/SubListOfSpeciesFeatures.class(in = 6190) (out= 1881)(deflated 69%) adding: org/sbml/libsbml/Submodel.class(in = 9914) (out= 3066)(deflated 69%) adding: org/sbml/libsbml/SyntaxChecker.class(in = 2141) (out= 930)(deflated 56%) adding: org/sbml/libsbml/Text.class(in = 10196) (out= 3017)(deflated 70%) adding: org/sbml/libsbml/TextGlyph.class(in = 4951) (out= 1711)(deflated 65%) adding: org/sbml/libsbml/Transformation.class(in = 4844) (out= 1692)(deflated 65%) adding: org/sbml/libsbml/Transformation2D.class(in = 3758) (out= 1420)(deflated 62%) adding: org/sbml/libsbml/Transition.class(in = 10816) (out= 3195)(deflated 70%) adding: org/sbml/libsbml/Trigger.class(in = 4301) (out= 1607)(deflated 62%) adding: org/sbml/libsbml/Unit.class(in = 8604) (out= 2845)(deflated 66%) adding: org/sbml/libsbml/UnitDefinition.class(in = 8699) (out= 2624)(deflated 69%) adding: org/sbml/libsbml/XMLAttributes.class(in = 6024) (out= 1776)(deflated 70%) adding: org/sbml/libsbml/XMLConstructorException.class(in = 1151) (out= 645)(deflated 43%) adding: org/sbml/libsbml/XMLError.class(in = 4410) (out= 1660)(deflated 62%) adding: org/sbml/libsbml/XMLErrorLog.class(in = 4265) (out= 1576)(deflated 63%) adding: org/sbml/libsbml/XMLInputStream.class(in = 4728) (out= 1592)(deflated 66%) adding: org/sbml/libsbml/XMLNamespaces.class(in = 4132) (out= 1457)(deflated 64%) adding: org/sbml/libsbml/XMLNode.class(in = 8021) (out= 2410)(deflated 69%) adding: org/sbml/libsbml/XMLOutputStream.class(in = 9120) (out= 2522)(deflated 72%) adding: org/sbml/libsbml/XMLOwningOutputFileStream.class(in = 1990) (out= 791)(deflated 60%) adding: org/sbml/libsbml/XMLOwningOutputStringStream.class(in = 1701) (out= 740)(deflated 56%) adding: org/sbml/libsbml/XMLToken.class(in = 12798) (out= 3354)(deflated 73%) adding: org/sbml/libsbml/XMLTriple.class(in = 2461) (out= 1084)(deflated 55%) adding: org/sbml/libsbml/double_array.class(in = 1701) (out= 845)(deflated 50%) adding: org/sbml/libsbml/int_array.class(in = 1650) (out= 838)(deflated 49%) adding: org/sbml/libsbml/libsbml.class(in = 16405) (out= 5882)(deflated 64%) adding: org/sbml/libsbml/libsbmlConstants.class(in = 67411) (out= 22005)(deflated 67%) adding: org/sbml/libsbml/libsbmlJNI.class(in = 449342) (out= 83624)(deflated 81%) make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' Creating: libsbml.jar /usr/bin/javac -cp /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/libsbmlj.jar:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java -source;1.6;-target;1.6 -d /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/test test/org/sbml/libsbml/test/annotation/TestCVTerms.java;test/org/sbml/libsbml/test/annotation/TestCVTerms_newSetters.java;test/org/sbml/libsbml/test/annotation/TestCopyAndClone.java;test/org/sbml/libsbml/test/annotation/TestDate_newSetters.java;test/org/sbml/libsbml/test/annotation/TestL3ModelHistory.java;test/org/sbml/libsbml/test/annotation/TestModelCreator_newSetters.java;test/org/sbml/libsbml/test/annotation/TestModelHistory.java;test/org/sbml/libsbml/test/annotation/TestModelHistory_newSetters.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotation.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotation2.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotationC.java;test/org/sbml/libsbml/test/annotation/TestValidation.java;test/org/sbml/libsbml/test/math/TestASTNode.java;test/org/sbml/libsbml/test/math/TestReadFromFile1.java;test/org/sbml/libsbml/test/math/TestReadFromFile2.java;test/org/sbml/libsbml/test/math/TestReadMathML.java;test/org/sbml/libsbml/test/math/TestValidASTNode.java;test/org/sbml/libsbml/test/math/TestWriteMathML.java;test/org/sbml/libsbml/test/sbml/TestAlgebraicRule.java;test/org/sbml/libsbml/test/sbml/TestAncestor.java;test/org/sbml/libsbml/test/sbml/TestAssignmentRule.java;test/org/sbml/libsbml/test/sbml/TestCompartment.java;test/org/sbml/libsbml/test/sbml/TestCompartmentType.java;test/org/sbml/libsbml/test/sbml/TestCompartmentType_newSetters.java;test/org/sbml/libsbml/test/sbml/TestCompartmentVolumeRule.java;test/org/sbml/libsbml/test/sbml/TestCompartment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestConsistencyChecks.java;test/org/sbml/libsbml/test/sbml/TestConstraint.java;test/org/sbml/libsbml/test/sbml/TestConstraint_newSetters.java;test/org/sbml/libsbml/test/sbml/TestCopyAndClone.java;test/org/sbml/libsbml/test/sbml/TestDelay.java;test/org/sbml/libsbml/test/sbml/TestEvent.java;test/org/sbml/libsbml/test/sbml/TestEventAssignment.java;test/org/sbml/libsbml/test/sbml/TestEventAssignment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestEvent_newSetters.java;test/org/sbml/libsbml/test/sbml/TestFunctionDefinition.java;test/org/sbml/libsbml/test/sbml/TestFunctionDefinition_newSetters.java;test/org/sbml/libsbml/test/sbml/TestGetMultipleObjects.java;test/org/sbml/libsbml/test/sbml/TestInitialAssignment.java;test/org/sbml/libsbml/test/sbml/TestInitialAssignment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestInternalConsistencyChecks.java;test/org/sbml/libsbml/test/sbml/TestKineticLaw.java;test/org/sbml/libsbml/test/sbml/TestKineticLaw_newSetters.java;test/org/sbml/libsbml/test/sbml/TestL3Compartment.java;test/org/sbml/libsbml/test/sbml/TestL3Event.java;test/org/sbml/libsbml/test/sbml/TestL3KineticLaw.java;test/org/sbml/libsbml/test/sbml/TestL3LocalParameter.java;test/org/sbml/libsbml/test/sbml/TestL3Model.java;test/org/sbml/libsbml/test/sbml/TestL3Parameter.java;test/org/sbml/libsbml/test/sbml/TestL3Reaction.java;test/org/sbml/libsbml/test/sbml/TestL3Species.java;test/org/sbml/libsbml/test/sbml/TestL3SpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestL3Trigger.java;test/org/sbml/libsbml/test/sbml/TestL3Unit.java;test/org/sbml/libsbml/test/sbml/TestListOf.java;test/org/sbml/libsbml/test/sbml/TestModel.java;test/org/sbml/libsbml/test/sbml/TestModel_newSetters.java;test/org/sbml/libsbml/test/sbml/TestModifierSpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestParameter.java;test/org/sbml/libsbml/test/sbml/TestParameterRule.java;test/org/sbml/libsbml/test/sbml/TestParameter_newSetters.java;test/org/sbml/libsbml/test/sbml/TestPriority.java;test/org/sbml/libsbml/test/sbml/TestRateRule.java;test/org/sbml/libsbml/test/sbml/TestReaction.java;test/org/sbml/libsbml/test/sbml/TestReaction_newSetters.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile1.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile2.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile3.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile4.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile5.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile6.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile7.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile8.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile9.java;test/org/sbml/libsbml/test/sbml/TestReadSBML.java;test/org/sbml/libsbml/test/sbml/TestRequiredAttributes.java;test/org/sbml/libsbml/test/sbml/TestRequiredElements.java;test/org/sbml/libsbml/test/sbml/TestRule.java;test/org/sbml/libsbml/test/sbml/TestRule_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSBMLConstructorException.java;test/org/sbml/libsbml/test/sbml/TestSBMLConvert.java;test/org/sbml/libsbml/test/sbml/TestSBMLConvertStrict.java;test/org/sbml/libsbml/test/sbml/TestSBMLDocument.java;test/org/sbml/libsbml/test/sbml/TestSBMLError.java;test/org/sbml/libsbml/test/sbml/TestSBMLNamespaces.java;test/org/sbml/libsbml/test/sbml/TestSBMLParentObject.java;test/org/sbml/libsbml/test/sbml/TestSBMLTransforms.java;test/org/sbml/libsbml/test/sbml/TestSBase.java;test/org/sbml/libsbml/test/sbml/TestSBase_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSpecies.java;test/org/sbml/libsbml/test/sbml/TestSpeciesConcentrationRule.java;test/org/sbml/libsbml/test/sbml/TestSpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestSpeciesReference_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSpeciesType.java;test/org/sbml/libsbml/test/sbml/TestSpeciesType_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSpecies_newSetters.java;test/org/sbml/libsbml/test/sbml/TestStoichiometryMath.java;test/org/sbml/libsbml/test/sbml/TestSyntaxChecker.java;test/org/sbml/libsbml/test/sbml/TestTrigger.java;test/org/sbml/libsbml/test/sbml/TestUnit.java;test/org/sbml/libsbml/test/sbml/TestUnitDefinition.java;test/org/sbml/libsbml/test/sbml/TestUnitDefinition_newSetters.java;test/org/sbml/libsbml/test/sbml/TestUnitKind.java;test/org/sbml/libsbml/test/sbml/TestUnit_newSetters.java;test/org/sbml/libsbml/test/sbml/TestWriteL3SBML.java;test/org/sbml/libsbml/test/sbml/TestWriteSBML.java;test/org/sbml/libsbml/test/xml/TestCopyAndClone.java;test/org/sbml/libsbml/test/xml/TestXMLAttributes.java;test/org/sbml/libsbml/test/xml/TestXMLAttributesC.java;test/org/sbml/libsbml/test/xml/TestXMLError.java;test/org/sbml/libsbml/test/xml/TestXMLErrorC.java;test/org/sbml/libsbml/test/xml/TestXMLNamespaces.java;test/org/sbml/libsbml/test/xml/TestXMLNode.java;test/org/sbml/libsbml/test/xml/TestXMLNode_newSetters.java;test/org/sbml/libsbml/test/xml/TestXMLOutputStream.java;test/org/sbml/libsbml/test/xml/TestXMLToken.java;test/org/sbml/libsbml/test/xml/TestXMLToken_newSetters.java;test/org/sbml/libsbml/test/xml/TestXMLTriple.java;/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java/AutoTestRunner.java;/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java/TestPrintVersion.java warning: [options] bootstrap class path not set in conjunction with -source 1.6 1 warning make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Built target binding_java_jar make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:57, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:480:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 480 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:361:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 361 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:376:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 376 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:644:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 644 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:57, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:480:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 480 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:651:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 651 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1178:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 1178 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:52, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:40, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:34: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1202:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1202 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension 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CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:60, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1382:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1382 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1398:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1398 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1414:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1414 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1429:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1429 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1445:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1445 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1462:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1462 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2043:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2043 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2215:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2215 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2367:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2367 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2516:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2516 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2665:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2665 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:361:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 361 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:376:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 376 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:644:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 644 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:498:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 498 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:975:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 975 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:651:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 651 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1178:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 1178 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutUtilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:52, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:40, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:34: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1202:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1202 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:60, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1382:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1382 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1398:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1398 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1414:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1414 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1429:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1429 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1445:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1445 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1462:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1462 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2043:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2043 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2215:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2215 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2367:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2367 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2516:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2516 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2665:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2665 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:498:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 498 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:975:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 975 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:135:7: note: in expansion of macro 'MULTI_CREATE_NS' 135 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:582:5: note: in expansion of macro 'MULTI_CREATE_NS' 582 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:46, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:131:8: note: in expansion of macro 'MULTI_CREATE_NS' 131 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:49, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:127:7: note: in expansion of macro 'MULTI_CREATE_NS' 127 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:320:5: note: in expansion of macro 'MULTI_CREATE_NS' 320 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:347:5: note: in expansion of macro 'MULTI_CREATE_NS' 347 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:403:4: note: in expansion of macro 'MULTI_CREATE_NS' 403 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutUtilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:124:5: note: in expansion of macro 'MULTI_CREATE_NS' 124 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:53, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:132:5: note: in expansion of macro 'MULTI_CREATE_NS' 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:479:5: note: in expansion of macro 'MULTI_CREATE_NS' 479 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:632:5: note: in expansion of macro 'MULTI_CREATE_NS' 632 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:734:5: note: in expansion of macro 'MULTI_CREATE_NS' 734 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:51, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:123:5: note: in expansion of macro 'MULTI_CREATE_NS' 123 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:294:5: note: in expansion of macro 'MULTI_CREATE_NS' 294 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:741:7: note: in expansion of macro 'MULTI_CREATE_NS' 741 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:46, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:131:8: note: in expansion of macro 'MULTI_CREATE_NS' 131 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:135:7: note: in expansion of macro 'MULTI_CREATE_NS' 135 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:582:5: note: in expansion of macro 'MULTI_CREATE_NS' 582 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:49, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:127:7: note: in expansion of macro 'MULTI_CREATE_NS' 127 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:320:5: note: in expansion of macro 'MULTI_CREATE_NS' 320 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:347:5: note: in expansion of macro 'MULTI_CREATE_NS' 347 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:403:4: note: in expansion of macro 'MULTI_CREATE_NS' 403 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:124:5: note: in expansion of macro 'MULTI_CREATE_NS' 124 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' 841 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:51, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:123:5: note: in expansion of macro 'MULTI_CREATE_NS' 123 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:294:5: note: in expansion of macro 'MULTI_CREATE_NS' 294 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:53, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:132:5: note: in expansion of macro 'MULTI_CREATE_NS' 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:479:5: note: in expansion of macro 'MULTI_CREATE_NS' 479 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:632:5: note: in expansion of macro 'MULTI_CREATE_NS' 632 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:734:5: note: in expansion of macro 'MULTI_CREATE_NS' 734 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:137, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' 841 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:741:7: note: in expansion of macro 'MULTI_CREATE_NS' 741 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' 841 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:449:5: note: in expansion of macro 'MULTI_CREATE_NS' 449 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:606:5: note: in expansion of macro 'MULTI_CREATE_NS' 606 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:763:5: note: in expansion of macro 'MULTI_CREATE_NS' 763 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:920:5: note: in expansion of macro 'MULTI_CREATE_NS' 920 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1177:7: note: in expansion of macro 'MULTI_CREATE_NS' 1177 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1625:5: note: in expansion of macro 'MULTI_CREATE_NS' 1625 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1632:5: note: in expansion of macro 'MULTI_CREATE_NS' 1632 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:739:5: note: in expansion of macro 'MULTI_CREATE_NS' 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:427:5: note: in expansion of macro 'MULTI_CREATE_NS' 427 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:618:3: note: in expansion of macro 'MULTI_CREATE_NS' 618 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:999:5: note: in expansion of macro 'MULTI_CREATE_NS' 999 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:544:5: note: in expansion of macro 'MULTI_CREATE_NS' 544 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:757:3: note: in expansion of macro 'MULTI_CREATE_NS' 757 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1380:5: note: in expansion of macro 'MULTI_CREATE_NS' 1380 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1387:5: note: in expansion of macro 'MULTI_CREATE_NS' 1387 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:586:5: note: in expansion of macro 'MULTI_CREATE_NS' 586 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:449:5: note: in expansion of macro 'MULTI_CREATE_NS' 449 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:606:5: note: in expansion of macro 'MULTI_CREATE_NS' 606 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:763:5: note: in expansion of macro 'MULTI_CREATE_NS' 763 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:920:5: note: in expansion of macro 'MULTI_CREATE_NS' 920 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1177:7: note: in expansion of macro 'MULTI_CREATE_NS' 1177 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1625:5: note: in expansion of macro 'MULTI_CREATE_NS' 1625 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1632:5: note: in expansion of macro 'MULTI_CREATE_NS' 1632 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:860:5: note: in expansion of macro 'MULTI_CREATE_NS' 860 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:929:5: note: in expansion of macro 'MULTI_CREATE_NS' 929 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:137, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' 841 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:854:5: note: in expansion of macro 'MULTI_CREATE_NS' 854 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:739:5: note: in expansion of macro 'MULTI_CREATE_NS' 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:544:5: note: in expansion of macro 'MULTI_CREATE_NS' 544 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:757:3: note: in expansion of macro 'MULTI_CREATE_NS' 757 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1380:5: note: in expansion of macro 'MULTI_CREATE_NS' 1380 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1387:5: note: in expansion of macro 'MULTI_CREATE_NS' 1387 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:113, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:270:5: note: in expansion of macro 'MULTI_CREATE_NS' 270 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:482:5: note: in expansion of macro 'MULTI_CREATE_NS' 482 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:427:5: note: in expansion of macro 'MULTI_CREATE_NS' 427 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:618:3: note: in expansion of macro 'MULTI_CREATE_NS' 618 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:999:5: note: in expansion of macro 'MULTI_CREATE_NS' 999 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:586:5: note: in expansion of macro 'MULTI_CREATE_NS' 586 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:860:5: note: in expansion of macro 'MULTI_CREATE_NS' 860 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:929:5: note: in expansion of macro 'MULTI_CREATE_NS' 929 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:854:5: note: in expansion of macro 'MULTI_CREATE_NS' 854 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:113, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:270:5: note: in expansion of macro 'MULTI_CREATE_NS' 270 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:482:5: note: in expansion of macro 'MULTI_CREATE_NS' 482 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator 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CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:834:5: note: in expansion of macro 'QUAL_CREATE_NS' 834 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1016:5: note: in expansion of macro 'QUAL_CREATE_NS' 1016 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:834:5: note: in expansion of macro 'QUAL_CREATE_NS' 834 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1016:5: note: in expansion of macro 'QUAL_CREATE_NS' 1016 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1067:5: note: in expansion of macro 'QUAL_CREATE_NS' 1067 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1124:3: note: in expansion of macro 'QUAL_CREATE_NS' 1124 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.h:102, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1337:5: note: in expansion of macro 'QUAL_CREATE_NS' 1337 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.h:93, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1240:5: note: in expansion of macro 'QUAL_CREATE_NS' 1240 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:84, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1333:5: note: in expansion of macro 'QUAL_CREATE_NS' 1333 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1067:5: note: in expansion of macro 'QUAL_CREATE_NS' 1067 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1124:3: note: in expansion of macro 'QUAL_CREATE_NS' 1124 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.h:86, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:455:5: note: in expansion of macro 'QUAL_CREATE_NS' 455 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:639:5: note: in expansion of macro 'QUAL_CREATE_NS' 639 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:797:5: note: in expansion of macro 'QUAL_CREATE_NS' 797 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1766:5: note: in expansion of macro 'QUAL_CREATE_NS' 1766 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.h:102, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1337:5: note: in expansion of macro 'QUAL_CREATE_NS' 1337 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.h:93, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1240:5: note: in expansion of macro 'QUAL_CREATE_NS' 1240 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:84, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1333:5: note: in expansion of macro 'QUAL_CREATE_NS' 1333 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.h:86, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:455:5: note: in expansion of macro 'QUAL_CREATE_NS' 455 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:639:5: note: in expansion of macro 'QUAL_CREATE_NS' 639 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:797:5: note: in expansion of macro 'QUAL_CREATE_NS' 797 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1766:5: note: in expansion of macro 'QUAL_CREATE_NS' 1766 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:32: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:445:5: note: in expansion of macro 'RENDER_CREATE_NS' 445 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:32: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:708:5: note: in expansion of macro 'RENDER_CREATE_NS' 708 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:364:5: note: in expansion of macro 'RENDER_CREATE_NS' 364 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:32: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:445:5: note: in expansion of macro 'RENDER_CREATE_NS' 445 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:32: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:708:5: note: in expansion of macro 'RENDER_CREATE_NS' 708 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.h:97, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:564:5: note: in expansion of macro 'RENDER_CREATE_NS' 564 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In member function 'virtual void GraphicalPrimitive1D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1162:47: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 1162 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:364:5: note: in expansion of macro 'RENDER_CREATE_NS' 364 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.h:97, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:564:5: note: in expansion of macro 'RENDER_CREATE_NS' 564 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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void GraphicalPrimitive1D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1162:47: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 1162 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'RenderGroup* LineEnding::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:530:3: note: in expansion of macro 'RENDER_CREATE_NS' 530 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'BoundingBox* LineEnding::createBoundingBox()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:556:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 556 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* LineEnding::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1310:3: note: in expansion of macro 'RENDER_CREATE_NS' 1310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1312:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1312 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'RenderGroup* LineEnding::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:530:3: note: in expansion of macro 'RENDER_CREATE_NS' 530 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'BoundingBox* LineEnding::createBoundingBox()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:556:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 556 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* LineEnding::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1310:3: note: in expansion of macro 'RENDER_CREATE_NS' 1310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1312:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1312 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:61, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'ColorDefinition* ListOfColorDefinitions::createColorDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' 294 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:366:3: note: in expansion of macro 'RENDER_CREATE_NS' 366 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:61, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'ColorDefinition* ListOfColorDefinitions::createColorDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' 294 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:366:3: note: in expansion of macro 'RENDER_CREATE_NS' 366 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'RenderCubicBezier* ListOfCurveElements::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:323:5: note: in expansion of macro 'RENDER_CREATE_NS' 323 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:412:3: note: in expansion of macro 'RENDER_CREATE_NS' 412 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'RenderCubicBezier* ListOfCurveElements::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:323:5: note: in expansion of macro 'RENDER_CREATE_NS' 323 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:412:3: note: in expansion of macro 'RENDER_CREATE_NS' 412 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Image* ListOfDrawables::createImage()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:260:5: note: in expansion of macro 'RENDER_CREATE_NS' 260 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Ellipse* ListOfDrawables::createEllipse()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:288:5: note: in expansion of macro 'RENDER_CREATE_NS' 288 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Rectangle* ListOfDrawables::createRectangle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:316:5: note: in expansion of macro 'RENDER_CREATE_NS' 316 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Polygon* ListOfDrawables::createPolygon()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:344:5: note: in expansion of macro 'RENDER_CREATE_NS' 344 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderGroup* ListOfDrawables::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:372:5: note: in expansion of macro 'RENDER_CREATE_NS' 372 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'LineEnding* ListOfDrawables::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:400:5: note: in expansion of macro 'RENDER_CREATE_NS' 400 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Text* ListOfDrawables::createText()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:428:5: note: in expansion of macro 'RENDER_CREATE_NS' 428 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderCurve* ListOfDrawables::createCurve()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:456:5: note: in expansion of macro 'RENDER_CREATE_NS' 456 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:516:3: note: in expansion of macro 'RENDER_CREATE_NS' 516 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Image* ListOfDrawables::createImage()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:260:5: note: in expansion of macro 'RENDER_CREATE_NS' 260 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Ellipse* ListOfDrawables::createEllipse()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:288:5: note: in expansion of macro 'RENDER_CREATE_NS' 288 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Rectangle* ListOfDrawables::createRectangle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:316:5: note: in expansion of macro 'RENDER_CREATE_NS' 316 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Polygon* ListOfDrawables::createPolygon()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:344:5: note: in expansion of macro 'RENDER_CREATE_NS' 344 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderGroup* ListOfDrawables::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:372:5: note: in expansion of macro 'RENDER_CREATE_NS' 372 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'LineEnding* ListOfDrawables::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:400:5: note: in expansion of macro 'RENDER_CREATE_NS' 400 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Text* ListOfDrawables::createText()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:428:5: note: in expansion of macro 'RENDER_CREATE_NS' 428 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderCurve* ListOfDrawables::createCurve()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:456:5: note: in expansion of macro 'RENDER_CREATE_NS' 456 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:516:3: note: in expansion of macro 'RENDER_CREATE_NS' 516 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:424:3: note: in expansion of macro 'RENDER_CREATE_NS' 424 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:604:5: note: in expansion of macro 'RENDER_CREATE_NS' 604 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:839:3: note: in expansion of macro 'RENDER_CREATE_NS' 839 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:424:3: note: in expansion of macro 'RENDER_CREATE_NS' 424 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:604:5: note: in expansion of macro 'RENDER_CREATE_NS' 604 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:839:3: note: in expansion of macro 'RENDER_CREATE_NS' 839 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'GlobalStyle* ListOfGlobalStyles::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:282:5: note: in expansion of macro 'RENDER_CREATE_NS' 282 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:347:3: note: in expansion of macro 'RENDER_CREATE_NS' 347 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'GlobalStyle* ListOfGlobalStyles::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:282:5: note: in expansion of macro 'RENDER_CREATE_NS' 282 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:347:3: note: in expansion of macro 'RENDER_CREATE_NS' 347 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'LinearGradient* ListOfGradientDefinitions::createLinearGradient()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:305:5: note: in expansion of macro 'RENDER_CREATE_NS' 305 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'RadialGradient* ListOfGradientDefinitions::createRadialGradient()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:334:5: note: in expansion of macro 'RENDER_CREATE_NS' 334 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:394:3: note: in expansion of macro 'RENDER_CREATE_NS' 394 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'LinearGradient* ListOfGradientDefinitions::createLinearGradient()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:305:5: note: in expansion of macro 'RENDER_CREATE_NS' 305 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'RadialGradient* ListOfGradientDefinitions::createRadialGradient()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:334:5: note: in expansion of macro 'RENDER_CREATE_NS' 334 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:394:3: note: in expansion of macro 'RENDER_CREATE_NS' 394 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:79, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'GradientStop* ListOfGradientStops::createGradientStop()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:303:5: note: in expansion of macro 'RENDER_CREATE_NS' 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:363:3: note: in expansion of macro 'RENDER_CREATE_NS' 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:79, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'GradientStop* ListOfGradientStops::createGradientStop()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:303:5: note: in expansion of macro 'RENDER_CREATE_NS' 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:363:3: note: in expansion of macro 'RENDER_CREATE_NS' 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'LineEnding* ListOfLineEndings::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' 294 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:368:3: note: in expansion of macro 'RENDER_CREATE_NS' 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'LineEnding* ListOfLineEndings::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' 294 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:368:3: note: in expansion of macro 'RENDER_CREATE_NS' 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:421:3: note: in expansion of macro 'RENDER_CREATE_NS' 421 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:585:5: note: in expansion of macro 'RENDER_CREATE_NS' 585 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:789:3: note: in expansion of macro 'RENDER_CREATE_NS' 789 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'LocalStyle* ListOfLocalStyles::createLocalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:298:5: note: in expansion of macro 'RENDER_CREATE_NS' 298 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:363:3: note: in expansion of macro 'RENDER_CREATE_NS' 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createLocalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:338:5: note: in expansion of macro 'RENDER_CREATE_NS' 338 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:362:5: note: in expansion of macro 'RENDER_CREATE_NS' 362 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:421:3: note: in expansion of macro 'RENDER_CREATE_NS' 421 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:585:5: note: in expansion of macro 'RENDER_CREATE_NS' 585 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:789:3: note: in expansion of macro 'RENDER_CREATE_NS' 789 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'LocalStyle* ListOfLocalStyles::createLocalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:298:5: note: in expansion of macro 'RENDER_CREATE_NS' 298 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:363:3: note: in expansion of macro 'RENDER_CREATE_NS' 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createLocalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:338:5: note: in expansion of macro 'RENDER_CREATE_NS' 338 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:362:5: note: in expansion of macro 'RENDER_CREATE_NS' 362 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:119:5: note: in expansion of macro 'RENDER_CREATE_NS' 119 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:420:5: note: in expansion of macro 'RENDER_CREATE_NS' 420 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:448:5: note: in expansion of macro 'RENDER_CREATE_NS' 448 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:119:5: note: in expansion of macro 'RENDER_CREATE_NS' 119 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:420:5: note: in expansion of macro 'RENDER_CREATE_NS' 420 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:448:5: note: in expansion of macro 'RENDER_CREATE_NS' 448 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:60, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:44, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:472:5: note: in expansion of macro 'RENDER_CREATE_NS' 472 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:500:5: note: in expansion of macro 'RENDER_CREATE_NS' 500 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:71, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1113:5: note: in expansion of macro 'RENDER_CREATE_NS' 1113 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1141:5: note: in expansion of macro 'RENDER_CREATE_NS' 1141 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1169:5: note: in expansion of macro 'RENDER_CREATE_NS' 1169 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1197:5: note: in expansion of macro 'RENDER_CREATE_NS' 1197 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1225:5: note: in expansion of macro 'RENDER_CREATE_NS' 1225 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'LineEnding* RenderGroup::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1253:5: note: in expansion of macro 'RENDER_CREATE_NS' 1253 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1281:5: note: in expansion of macro 'RENDER_CREATE_NS' 1281 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1309:5: note: in expansion of macro 'RENDER_CREATE_NS' 1309 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2626:3: note: in expansion of macro 'RENDER_CREATE_NS' 2626 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:733:5: note: in expansion of macro 'RENDER_CREATE_NS' 733 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:895:5: note: in expansion of macro 'RENDER_CREATE_NS' 895 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:923:5: note: in expansion of macro 'RENDER_CREATE_NS' 923 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1085:5: note: in expansion of macro 'RENDER_CREATE_NS' 1085 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:60, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:44, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:472:5: note: in expansion of macro 'RENDER_CREATE_NS' 472 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:500:5: note: in expansion of macro 'RENDER_CREATE_NS' 500 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'RenderGroup* Style::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:592:3: note: in expansion of macro 'RENDER_CREATE_NS' 592 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'virtual SBase* Style::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1264:3: note: in expansion of macro 'RENDER_CREATE_NS' 1264 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:733:5: note: in expansion of macro 'RENDER_CREATE_NS' 733 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:895:5: note: in expansion of macro 'RENDER_CREATE_NS' 895 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:923:5: note: in expansion of macro 'RENDER_CREATE_NS' 923 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1085:5: note: in expansion of macro 'RENDER_CREATE_NS' 1085 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:71, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1113:5: note: in expansion of macro 'RENDER_CREATE_NS' 1113 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1141:5: note: in expansion of macro 'RENDER_CREATE_NS' 1141 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1169:5: note: in expansion of macro 'RENDER_CREATE_NS' 1169 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1197:5: note: in expansion of macro 'RENDER_CREATE_NS' 1197 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1225:5: note: in expansion of macro 'RENDER_CREATE_NS' 1225 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'LineEnding* RenderGroup::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1253:5: note: in expansion of macro 'RENDER_CREATE_NS' 1253 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1281:5: note: in expansion of macro 'RENDER_CREATE_NS' 1281 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1309:5: note: in expansion of macro 'RENDER_CREATE_NS' 1309 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2626:3: note: in expansion of macro 'RENDER_CREATE_NS' 2626 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'RenderGroup* Style::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:592:3: note: in expansion of macro 'RENDER_CREATE_NS' 592 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'virtual SBase* Style::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1264:3: note: in expansion of macro 'RENDER_CREATE_NS' 1264 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util/RenderUtilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/CVTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp: In member function 'void Date::parseDateNumbersToString()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:463:29: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 6 and 23 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:469:28: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:475:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:481:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:487:28: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:506:30: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:512:30: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/ConversionOption.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/ConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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src/CMakeFiles/sbml.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp: In member function 'void Date::parseDateNumbersToString()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:463:29: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 6 and 23 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:469:28: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:475:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:481:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:487:28: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:506:30: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:512:30: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/ConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/RegisterConverters.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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/builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLIdConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h: In copy constructor 'ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h:472:24: warning: 'ASTBasePlugin::mExtendedMathType' will be initialized after [-Wreorder] 472 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h:471:34: warning: 'std::vector ASTBasePlugin::mPkgASTNodeValues' [-Wreorder] 471 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp:296:1: warning: when initialized here [-Wreorder] 296 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:363:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 363 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp:405:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 405 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp:421:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 421 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp:529:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 529 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp:545:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 545 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h: In copy constructor 'ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h:472:24: warning: 'ASTBasePlugin::mExtendedMathType' will be initialized after [-Wreorder] 472 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h:471:34: warning: 'std::vector ASTBasePlugin::mPkgASTNodeValues' [-Wreorder] 471 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp:296:1: warning: when initialized here [-Wreorder] 296 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp:2105:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2105 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp:2121:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2121 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp:880:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 880 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp:896:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 896 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp:888:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 888 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp:904:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 904 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp:1140:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1140 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp:1156:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1156 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp:2374:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2374 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp:2390:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2390 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp:1293:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1293 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp:1309:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1309 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:363:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 363 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp:1365:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1365 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp:1381:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1381 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp:1275:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1275 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp:1291:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1291 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp:2067:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2067 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp:2083:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2083 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp:832:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 832 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp:848:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 848 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp:405:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 405 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp:421:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 421 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp:435:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 435 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp:451:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 451 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp:529:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 529 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp:545:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 545 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp:880:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 880 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp:896:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 896 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp:7414:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7414 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp:7430:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7430 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp:2105:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2105 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp:2121:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2121 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp:1994:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1994 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp:2010:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2010 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp:1140:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1140 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp:1156:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1156 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp:736:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 736 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp:752:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 752 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp:888:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 888 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp:904:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 904 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp:527:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 527 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp:543:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 543 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp:1293:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1293 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp:1309:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1309 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp:2374:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2374 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp:2390:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2390 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp:2679:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2679 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2695 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ExpectedAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1912:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1912 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1928:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1928 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1944:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1944 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1960:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1960 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1976:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1976 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1992:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1992 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp:1365:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1365 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp:1381:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1381 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp:1275:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1275 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp:1291:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1291 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp:2067:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2067 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp:2083:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2083 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLConvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp:832:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 832 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp:848:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 848 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp:435:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 435 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp:451:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 451 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2299:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2299 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2315:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2315 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2331:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2331 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLErrorLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp:736:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 736 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp:752:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 752 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp:1994:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1994 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp:2010:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2010 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp:7414:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7414 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp:7430:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7430 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp:527:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 527 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp:543:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 543 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLVisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp:2679:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2679 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2695 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLWriter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1912:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1912 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1928:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1928 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1944:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1944 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1960:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1960 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1976:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1976 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1992:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1992 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBO.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLConvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2299:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2299 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2315:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2315 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2331:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2331 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLErrorLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In member function 'virtual void SBase::writeAttributes(XMLOutputStream&) const': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:5939:16: warning: unused variable 'pkgCoreVersion' [-Wunused-variable] 5939 | unsigned int pkgCoreVersion = getPackageCoreVersion(); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:1973:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1973 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:1989:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1989 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:2005:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2005 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:2021:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2021 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp:2661:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2661 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp:2677:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2677 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp:878:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 878 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp:894:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 894 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp:642:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 642 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp:658:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 658 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLTypeCodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLTransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SyntaxChecker.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp:1012:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1012 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp:1028:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1028 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLVisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building C object src/CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp:2714:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2714 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp:2730:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2730 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2440:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2440 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2456:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2456 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static int DefinitionURLRegistry::addDefinitionURL(const string&, int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:77:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 77 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:101:11: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 101 | if (i == index) | ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/L3FormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp:2661:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2661 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp:2677:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2677 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In member function 'virtual void SBase::writeAttributes(XMLOutputStream&) const': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:5939:16: warning: unused variable 'pkgCoreVersion' [-Wunused-variable] 5939 | unsigned int pkgCoreVersion = getPackageCoreVersion(); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3ParserSettings.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/L3ParserSettings.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/L3ParserSettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/L3Parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:1973:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1973 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:1989:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1989 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:2005:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2005 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:2021:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2021 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/FormulaUnitsData.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/UnitKindList.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/MathML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/MathML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'bool isValidCSymbol(SBMLNamespaces*, ASTNodeType_t)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:399:18: warning: unused variable 'version' [-Wunused-variable] 399 | unsigned int version = sbmlns->getVersion(); | ^~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:419:16: warning: unused variable 'n' [-Wunused-variable] 419 | unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs(); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'ASTNode* readMathML(XMLInputStream&, std::string, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:2168:21: warning: unused variable 'name' [-Wunused-variable] 2168 | const string& name = element1.getName(); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/CallbackRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/CallbackRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/IdFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/IdFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp:878:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 878 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp:894:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 894 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdentifierTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/IdentifierTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/IdentifierTransformer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/UnitFormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdList.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/IdList.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/IdList.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/List.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/List.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/List.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/MathFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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object src/CMakeFiles/sbml-static.dir/sbml/util/MetaIdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/MetaIdFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/MetaIdFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/Stack.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/Stack.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/Stack.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/PrefixTransformer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp:642:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 642 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp:658:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 658 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/StringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/memory.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/memory.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/memory.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/util.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/util.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SyntaxChecker.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp:1012:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1012 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp:1028:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1028 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp:2714:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2714 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp:2730:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2730 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 51%] Building C object src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/InternalConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2440:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2440 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2456:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2456 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L1CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static int DefinitionURLRegistry::addDefinitionURL(const string&, int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:77:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 77 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:101:11: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 101 | if (i == index) | ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L2v1CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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&& /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'bool isValidCSymbol(SBMLNamespaces*, ASTNodeType_t)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:399:18: warning: unused variable 'version' [-Wunused-variable] 399 | unsigned int version = sbmlns->getVersion(); | ^~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:419:16: warning: unused variable 'n' [-Wunused-variable] 419 | unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs(); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'ASTNode* readMathML(XMLInputStream&, std::string, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:2168:21: warning: unused variable 'name' [-Wunused-variable] 2168 | const string& name = element1.getName(); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/UnitKindList.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/CallbackRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/CallbackRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/CallbackRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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src/CMakeFiles/sbml.dir/sbml/util/IdentifierTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdList.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/MathFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/MathFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/Stack.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/PrefixTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/StringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/StringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building C object src/CMakeFiles/sbml.dir/sbml/util/memory.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/UnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L2v3CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L3v2CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/IdNameNewOnSBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/KineticLawVars.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/LogicalArgsMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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CMakeFiles/sbml.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/ExponentUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/unzip.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/unzip.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 64%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/ioapi_mem.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/ioapi_mem.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi_mem.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 64%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/ioapi.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/ioapi.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /usr/include/string.h:504, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:15: In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'file_build_ioposix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/zfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 64%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 64%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function 'void XMLOutputStream::writeComment(const string&, const string&, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:991:39: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-overflow=] 991 | sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", | ^~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:991:35: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/ios:42, from /usr/include/c++/10/ostream:38, from /usr/include/c++/10/iostream:39, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:39: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 14 and 60 bytes into a destination of size 17 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLTriple.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLTriple.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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object src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/LibXMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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/usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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src/CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/bzfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building C object src/CMakeFiles/sbml.dir/sbml/compress/unzip.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/unzip.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/unzip.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building C object src/CMakeFiles/sbml.dir/sbml/compress/ioapi.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/ioapi.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /usr/include/string.h:504, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:15: In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'file_build_ioposix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building C object src/CMakeFiles/sbml.dir/sbml/compress/ioapi_mem.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/ioapi_mem.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi_mem.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building C object src/CMakeFiles/sbml.dir/sbml/compress/zip.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend.internal". Scanning dependencies of target test_comp_extensions make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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object src/CMakeFiles/sbml.dir/sbml/xml/XMLFileBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLFileBuffer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLFileBuffer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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src/CMakeFiles/sbml.dir/sbml/xml/XMLMemoryBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLMemoryBuffer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLMemoryBuffer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLInputStream.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function 'void XMLOutputStream::writeComment(const string&, const string&, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:991:39: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-overflow=] 991 | sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", | ^~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:991:35: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/ios:42, from /usr/include/c++/10/ostream:38, from /usr/include/c++/10/iostream:39, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:39: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 14 and 60 bytes into a destination of size 17 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLTriple.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build 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Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend.internal". Scanning dependencies of target test_comp_sbase make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLTokenizer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLTokenizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend.internal". Scanning dependencies of target test_comp_util make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/LibXMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/LibXMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp: In function 'void test_comp_AttributeNamespaces_model_extraCompAtt_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp:771:17: warning: unused variable 'errors' [-Wunused-variable] 771 | SBMLErrorLog* errors = doc->getErrorLog(); | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator 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object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/LibXMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/LibXMLTranscode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningErrorMessages.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Linking CXX executable test_comp_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -o test_comp_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Built target test_comp_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestCompLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend.internal". Scanning dependencies of target test_fbc_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/test/TestFbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestURIResolvers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Linking CXX executable test_sbml_package_fbc cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_fbc.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -o test_sbml_package_fbc ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Built target test_sbml_package_fbc make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend.internal". Scanning dependencies of target test_extension_package_groups make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Linking CXX executable test_comp_sbase cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_sbase.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestPort.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -o test_comp_sbase ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Built target test_comp_sbase make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend.internal". Scanning dependencies of target test_groups_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestGroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestReadGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Linking CXX executable test_fbc_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fbc_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -o test_fbc_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Linking CXX executable test_comp_util cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_util.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o CMakeFiles/test_comp_util.dir/TestRunner.c.o -o test_comp_util ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Built target test_comp_util make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/depend make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Built target test_fbc_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build 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Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/depend.internal". Scanning dependencies of target test_l3v2extendedmath_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/depend.internal". Scanning dependencies of target test_extension_package_l3v2extendedmath make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/TestL3v2MathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestReadL3v2EMExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestReadWriteInfix.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Linking CXX executable test_groups_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_groups_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_groups_validator.dir/TestFile.cpp.o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -o test_groups_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Built target test_groups_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend.internal". Scanning dependencies of target test_sbml_package_layout make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Linking CXX executable test_extension_package_groups cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_groups.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -o test_extension_package_groups ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Built target test_extension_package_groups make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend.internal". Scanning dependencies of target test_layout_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:464:13: warning: 'test_L3v2EMExtension_read_disable_via_sbmldocument_and_write_L3V1V1' defined but not used [-Wunused-variable] 464 | START_TEST (test_L3v2EMExtension_read_disable_via_sbmldocument_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:381:13: warning: 'test_L3v2EMExtension_read_enable_via_sbmldocument_and_write_L3V1V1' defined but not used [-Wunused-variable] 381 | START_TEST (test_L3v2EMExtension_read_enable_via_sbmldocument_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:304:13: warning: 'test_L3v2EMExtension_read_disable_via_model_and_write_L3V1V1' defined but not used [-Wunused-variable] 304 | START_TEST (test_L3v2EMExtension_read_disable_via_model_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:220:13: warning: 'test_L3v2EMExtension_read_enable_via_model_and_write_L3V1V1' defined but not used [-Wunused-variable] 220 | START_TEST (test_L3v2EMExtension_read_enable_via_model_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Linking CXX executable test_l3v2extendedmath_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_l3v2extendedmath_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -o test_l3v2extendedmath_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/test/TestLayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Built target test_l3v2extendedmath_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend.internal". Scanning dependencies of target test_sbml_package_multi make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test/TestCheckConsistency.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Linking CXX executable test_extension_package_l3v2extendedmath cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_l3v2extendedmath.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic 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src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test/TestMultiAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints 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object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend.internal". Scanning dependencies of target test_multi_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Linking CXX executable test_layout_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_layout_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_layout_validator.dir/TestFile.cpp.o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -o test_layout_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Built target test_layout_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/test/TestMultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test 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Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend.internal". Scanning dependencies of target test_extension_package_qual make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Linking CXX executable test_sbml_package_multi cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_multi.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -o test_sbml_package_multi ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Built target test_sbml_package_multi make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestReadQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 76%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 76%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Linking CXX executable test_multi_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multi_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_multi_validator.dir/TestFile.cpp.o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -o test_multi_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 76%] Built target test_multi_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend.internal". Scanning dependencies of target test_sbml_package_qual make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 76%] Linking CXX executable test_extension_package_qual cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_qual.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro 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/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend.internal". Scanning dependencies of target test_qual_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/test/TestQualConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend.internal". Scanning dependencies of target test_sbml_package_render make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Linking CXX executable test_sbml_package_layout cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_layout.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -o test_sbml_package_layout ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Built target test_sbml_package_layout make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend.internal". Scanning dependencies of target test_render_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Linking CXX executable test_qual_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_qual_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_qual_validator.dir/TestFile.cpp.o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -o test_qual_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Built target test_qual_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_render_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Linking CXX executable test_sbml_package_qual cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_qual.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -o test_sbml_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Built target test_sbml_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/test/TestRenderConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend.internal". Scanning dependencies of target test_sbml_annotation make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend.internal". Scanning dependencies of target test_sbml_conversion make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestL3ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Linking CXX executable test_render_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_render_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_render_validator.dir/TestFile.cpp.o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -o test_render_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Built target test_render_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestInferUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestSBMLConverterRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test 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Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend.internal". Scanning dependencies of target test_sbml_extension make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 82%] Building C object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestStripPackageConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestSyncAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestCVTerms_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestDate_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestModelCreator_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestModelHistory.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestUnitsConverter2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestUnitsConverterL2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBasePluginCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestUnknownPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Linking CXX executable test_sbml_annotation cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_annotation.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -o test_sbml_annotation ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Built target test_sbml_annotation make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Linking CXX executable test_sbml_conversion cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_conversion.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -o test_sbml_conversion ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Built target test_sbml_conversion make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend.internal". 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestGetValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestChildFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Linking CXX executable test_sbml_extension cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_extension.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -o test_sbml_extension ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Built target test_sbml_extension make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFile1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFile2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend.internal". Scanning dependencies of target test_sbml_sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:1534:13: warning: 'test_element_implies' defined but not used [-Wunused-variable] 1534 | START_TEST (test_element_implies) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:1515:13: warning: 'test_element_rem' defined but not used [-Wunused-variable] 1515 | START_TEST (test_element_rem) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:1496:13: warning: 'test_element_quotient' defined but not used [-Wunused-variable] 1496 | START_TEST (test_element_quotient) | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:1477:13: warning: 'test_element_min' defined but not used [-Wunused-variable] 1477 | START_TEST (test_element_min) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:1458:13: warning: 'test_element_max' defined but not used [-Wunused-variable] 1458 | START_TEST (test_element_max) | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestValidASTNode.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestValidASTNode.cpp: In function 'void test_ValidASTNode_Number_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestValidASTNode.cpp:169:7: warning: unused variable 'i' [-Wunused-variable] 169 | int i = n->addChild(d); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestValidASTNode.cpp: In function 'void test_ValidASTNode_Name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestValidASTNode.cpp:185:7: warning: unused variable 'i' [-Wunused-variable] 185 | int i = n->addChild(d); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAncestor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestWriteMathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAttributeFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAttributeFunctions.cpp:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAttributeFunctions.cpp:1348:13: warning: 'test_Attributes_Trigger_Id' defined but not used [-Wunused-variable] 1348 | START_TEST (test_Attributes_Trigger_Id) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestWriteMathMLFromAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConsistencyChecks.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestFormulaFormatter.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestASTNode.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator 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src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend.internal". Scanning dependencies of target test_sbml_units make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestCalculatedUnitDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInternalConsistencyChecks.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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&& /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_render.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -o test_sbml_package_render ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Built target test_sbml_package_render make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestMemory.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestMemory.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions_undefined.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Linking CXX executable test_sbml_math cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_math.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -o test_sbml_math ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestStack.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStack.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Built target test_sbml_math make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend.internal". Scanning dependencies of target test_sbml_validator make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Linking CXX executable test_sbml_util cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_util.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_util.dir/TestList.c.o CMakeFiles/test_sbml_util.dir/TestMemory.c.o CMakeFiles/test_sbml_util.dir/TestRunner.c.o CMakeFiles/test_sbml_util.dir/TestStack.c.o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -o test_sbml_util ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Built target test_sbml_util make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend.internal". Scanning dependencies of target test_sbml_xml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile6.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestFormulaUnitsData_map.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUnitFormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile9.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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-fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLAttributesC.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Linking CXX executable test_sbml_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_validator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -o test_sbml_validator ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Built target test_sbml_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLErrorC.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_lib.dir/build.make src/bindings/java/CMakeFiles/binding_java_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_lib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_lib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_lib.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_lib.dir/depend.internal". Scanning dependencies of target binding_java_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_lib.dir/build.make src/bindings/java/CMakeFiles/binding_java_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLErrorLog.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUnitFormulaFormatter2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLInputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLNamespaces.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUnitFormulaFormatter3.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLNode_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLOutputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUtilsUnit.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLToken.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUtilsUnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLToken_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLTriple.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Linking CXX executable test_sbml_units cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_units.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -o test_sbml_units ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Built target test_sbml_units make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Linking CXX executable test_sbml_xml cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_xml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -o test_sbml_xml ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Built target test_sbml_xml make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRemoveFromParent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRequiredAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/depend.internal". Scanning dependencies of target binding_python_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRequiredElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLConvertStrict.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLParentObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp:791:12: warning: 'test_SBMLTransforms_replaceIAWithFD' defined but not used [-Wunused-variable] 791 | START_TEST(test_SBMLTransforms_replaceIAWithFD) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase_newSetters.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestWriteL3SBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestWriteL3V2SBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestWriteSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAlgebraicRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAssignmentRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentVolumeRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator 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-c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestDelay.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/bindings/java/CMakeFiles/binding_java_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_java_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_java_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3KineticLaw.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Linking CXX shared library libsbmlj.so cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_java_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libsbmlj.so -o libsbmlj.so CMakeFiles/binding_java_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Built target binding_java_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend.internal". Scanning dependencies of target binding_ruby_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Trigger.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Unit.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestListOf.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_ruby_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'void SWIG_RubyInitializeTrackings()': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:1268:85: error: call of overloaded 'rb_define_virtual_variable(const char [21], VALUE (&)(...), NULL)' is ambiguous 1268 | rb_define_virtual_variable("SWIG_TRACKINGS_COUNT", swig_ruby_trackings_count, NULL); | ^ In file included from /usr/include/ruby/ruby.h:2863, from /usr/include/ruby.h:33, from /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:881: /usr/include/ruby/backward/cxxanyargs.hpp:59:1: note: candidate: 'void ruby::backward::cxxanyargs::rb_define_virtual_variable(const char*, VALUE (*)(...), void (*)(...))' 59 | rb_define_virtual_variable(const char *q, type *w, void_type *e) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ruby/backward/cxxanyargs.hpp:90:1: note: candidate: 'void ruby::backward::cxxanyargs::rb_define_virtual_variable(const char*, VALUE (*)(...), void (*)(VALUE, ID, VALUE*))' 90 | rb_define_virtual_variable(const char *q, type *w, rb_gvar_setter_t *e) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__slice(std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type, std::__cxx11::basic_string::difference_type)': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5028:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] 5028 | catch( std::out_of_range ) { | ^~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__delete_at(std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type)': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5074:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] 5074 | catch (std::out_of_range) | ^~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__at(const std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type)': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5084:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] 5084 | catch( std::out_of_range ) { | ^~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg____getitem____SWIG_0(const std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type, std::__cxx11::basic_string::difference_type)': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5106:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] 5106 | catch( std::out_of_range ) { | ^~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg____getitem____SWIG_1(const std::__cxx11::basic_string*, std::__cxx11::basic_string::difference_type)': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5115:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] 5115 | catch( std::out_of_range ) { | ^~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = long int]': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5026:127: required from here /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4046:69: warning: comparison of integer expressions of different signedness: 'long int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4046 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4046:82: warning: comparison of integer expressions of different signedness: 'long int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4046 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = int]': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5149:131: required from here /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4046:69: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4046 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4046:82: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4046 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ make[2]: *** [src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make:641: src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o] Error 1 make[1]: *** [CMakeFiles/Makefile2:2728: src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRateRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile1.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile2.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile3.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile4.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLDocument.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLConvert.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension 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-fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSyntaxChecker.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestTrigger.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnit.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_python_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/LibSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Linking CXX shared module LibSBML.so cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o LibSBML.so CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o ../../libsbml-static.a -lperl -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Built target binding_perl_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make: *** [Makefile:186: all] Error 2 error: Bad exit status from /var/tmp/rpm-tmp.b4qosS (%build) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.b4qosS (%build) Child return code was: 1 EXCEPTION: [Error()] Traceback (most recent call last): File "/usr/lib/python3.8/site-packages/mockbuild/trace_decorator.py", line 95, in trace result = func(*args, **kw) File "/usr/lib/python3.8/site-packages/mockbuild/util.py", line 746, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/libsbml.spec