Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/avogadro.spec'], chrootPath='/var/lib/mock/f29-build-26003-13515/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/avogadro.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/avogadro-1.2.0-18.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/avogadro.spec'], chrootPath='/var/lib/mock/f29-build-26003-13515/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/avogadro.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.lFNFSw + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf avogadro-1.2.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/avogadro-1.2.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadro-1.2.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (avogadro-1.1.1-mkspecs-dir.patch):' Patch #0 (avogadro-1.1.1-mkspecs-dir.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .mkspecs-dir --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 552 (offset 5 lines). Patch #1 (avogadro-1.1.1-no-strip.patch): + echo 'Patch #1 (avogadro-1.1.1-no-strip.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .no-strip --fuzz=0 patching file CMakeLists.txt + echo 'Patch #2 (avogadro-1.2.0-pkgconfig_eigen.patch):' Patch #2 (avogadro-1.2.0-pkgconfig_eigen.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .pkgconfig_eigen --fuzz=0 patching file avogadro.pc.in + echo 'Patch #10 (avogadro-cmake-3.2.patch):' Patch #10 (avogadro-cmake-3.2.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .cmake_x11 --fuzz=0 patching file CMakeLists.txt + echo 'Patch #12 (avogadro-1.1.1-Q_MOC_RUN.patch):' Patch #12 (avogadro-1.1.1-Q_MOC_RUN.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .Q_MOC_RUN --fuzz=0 patching file libavogadro/src/pythonengine_p.h Hunk #1 succeeded at 31 (offset 4 lines). patching file libavogadro/src/pythonextension_p.h Hunk #1 succeeded at 33 (offset 4 lines). patching file libavogadro/src/pythoninterpreter.h patching file libavogadro/src/pythonscript.h patching file libavogadro/src/pythontool_p.h Hunk #1 succeeded at 31 (offset 4 lines). Patch #13 (avogadro-1.1.1-python_openbabel.patch): + echo 'Patch #13 (avogadro-1.1.1-python_openbabel.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .python_openbabel --fuzz=0 patching file libavogadro/src/python/CMakeLists.txt + echo 'Patch #14 (avogadro-1.1.1-qt.patch):' Patch #14 (avogadro-1.1.1-qt.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .qt --fuzz=0 patching file libavogadro/tests/moleculefiletest.cpp Hunk #1 succeeded at 153 (offset 2 lines). Hunk #2 succeeded at 173 (offset 2 lines). Patch #15 (avogadro-1.2.0-libmsymfloat.patch): + echo 'Patch #15 (avogadro-1.2.0-libmsymfloat.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .libmsymfloat --fuzz=0 patching file libavogadro/src/extensions/symmetry/libmsym/src/orbital.c + echo 'Patch #16 (avogadro_eigen3.patch):' Patch #16 (avogadro_eigen3.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .eigen3 --fuzz=0 patching file avogadro/src/CMakeLists.txt patching file avogadro/src/mainwindow.cpp patching file CMakeLists.txt patching file libavogadro/src/camera.cpp patching file libavogadro/src/camera.h patching file libavogadro/src/CMakeLists.txt patching file libavogadro/src/engines/wireengine.cpp patching file libavogadro/src/extensions/crystallography/crystallographyextension.cpp patching file libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp patching file libavogadro/src/extensions/orca/orcaanalysedialog.cpp patching file libavogadro/src/extensions/orca/orcainputdialog.cpp patching file libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp patching file libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp patching file libavogadro/src/extensions/surfaces/openqube/CMakeLists.txt patching file libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp patching file libavogadro/src/extensions/surfaces/openqube/slaterset.cpp patching file libavogadro/src/glpainter_p.cpp patching file libavogadro/src/glwidget.cpp patching file libavogadro/src/leastsquares.h patching file libavogadro/src/molecule.cpp patching file libavogadro/src/navigate.cpp patching file libavogadro/src/python/camera.cpp patching file libavogadro/src/python/eigen.cpp patching file libavogadro/src/tools/bondcentrictool.cpp patching file libavogadro/src/tools/manipulatetool.cpp patching file libavogadro/src/tools/navigatetool.cpp patching file libavogadro/src/tools/skeletontree.cpp patching file libavogadro/src/tools/skeletontree.h patching file libavogadro/tests/CMakeLists.txt BUILDSTDERR: ++ find . -perm /755 -type f '(' -name '*.cpp' -o -name '*.h' -o -name '*.c' ')' + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/c++/templateextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/c++/templateextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/03-ViewPlane/viewplaneextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/03-ViewPlane/viewplaneextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/01-HelloWorld/helloworlddialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/01-HelloWorld/helloworldextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/01-HelloWorld/helloworlddialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/01-HelloWorld/helloworldextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/dynamicdisplayextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/dynamicdisplaydialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/dynamicdisplaydialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/dynamicdisplayextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/conformerplotdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/conformerplotdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/conformerplotextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/conformerplotextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/04-RotateSelection/rotateselectionextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/04-RotateSelection/rotateselectionextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/04-RotateSelection/rotateselectiondialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/04-RotateSelection/rotateselectiondialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/drawcommandtest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/moleculebench.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/primitivemodeltest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/modeltest.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/moleculefiletest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/modeltest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/moleculetest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/neighborlisttest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/hydrogenscommandtest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/aligntool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/autoopttool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/drawcommand.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/navigatetool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/autoopttool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/manipulatetool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixtool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/clickmeasuretool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/navigatetool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/skeletontree.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/drawtool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/autorotatetool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/drawtool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/selectrotatetool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/manipulatetool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/moveatomcommand.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/autorotatetool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/drawcommand.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/clickmeasuretool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/eyecandy.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/aligntool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/selectrotatetool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/bondcentrictool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/bondcentrictool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/eyecandy.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixtool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/skeletontree.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/moveatomcommand.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/fragment.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/fragment.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementitem_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/global.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/bond.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotaxis.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/painter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/periodictableview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/camera.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotpoint.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/elementcolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/elementcolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/smartscolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/customcolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/chargecolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/customcolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/residuecolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/distancecolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/atomindexcolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/chargecolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/residuecolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/smartscolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/atomindexcolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/distancecolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/dockextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonextension_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementdetail_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythoninterpreter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/moleculefile.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/molecule.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotobject.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pluginmanager.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/cube.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/navigate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/global.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/dockwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/molecule.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/surfacemeshgenerator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colorbutton.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/cube.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonextension_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementdetail_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glpainter_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/obeigenconv.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementitem_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/idlist.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/primitivelist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/periodictablescene_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/neighborlist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/color.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/textmatrixeditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotpoint.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/atom.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementtranslator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/mesh.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/undosequence.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glhit.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/bond.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/periodictablescene_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/cylinder_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/primitive.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/readfilethread_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/idlist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonengine_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/camera.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/dockwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonerror.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotaxis.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonscript.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/simplewireengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/sphereengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/cartoonmeshgenerator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/bsdyengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/ringengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/ribbonengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/dipoleengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/forceengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/cartoonengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/wireengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/qtaimengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/stickengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/axesengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/ribbonengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/labelengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/surfaceengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/surfaceengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/cartoonengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/polygonengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/ringengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/dipoleengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/hbondengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/cartoonmeshgenerator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/wireengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/hbondengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/simplewireengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/stickengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/bsdyengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/qtaimengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/sphereengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/axesengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/polygonengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/forceengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/labelengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glhit.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/periodictableview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/atom.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/protein.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/protein.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/navigate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/zmatrix.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/primitive.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colorbutton.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/toolgroup.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonthread_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonerror.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/readfilethread_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/fileimportextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/fileimportextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmldialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/h2methylextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/h2methylextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertfragmentextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/pythonterminal.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/animationextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/wiitrackextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/conformersearchdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/supercelldialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povrayextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmlextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/supercellextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/cartesianextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertpeptideextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertfragmentextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/selectextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/shaderextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povrayextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/constraintsmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/invertchiralextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcainputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaspectra.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaspectra.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaanalysedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcadata.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcainputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcadata.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaanalysedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertdnaextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertdnaextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/networkfetchextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/propextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/sortfiltertreeproxymodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/forcefieldextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/inputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/molproinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/molproinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/inputfileextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessinputdata.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamesshighlighter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/daltoninputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/inputfileextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/inputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessukinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/teracheminputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/qcheminputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/nwcheminputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/lammpsinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gaussianinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessinputdata.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/abinitinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/psi4inputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/mopacinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/networkfetchextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertcommand.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/propmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmlpainter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2ps/gl2psTestSimple.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2ps/gl2psTest.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2ps/gl2ps.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2ps/gl2ps.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/forcefieldextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/CoreConst.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Constants.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Cell.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/avotubegen.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/avotubegen.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/trajvideomaker.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/wiitrackextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertfragmentdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/invertchiralextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povraydialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/conformersearchdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/animationextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/propmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/forcefielddialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertpeptideextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmldialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2psextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spin.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/kpoint.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spg_database.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spg_database.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/pointgroup.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/pointgroup.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/cell.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/site_symmetry.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spacegroup.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/cell.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/tetrahedron_method.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/tetrahedron_method.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/symmetry.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spglib.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/primitive.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spin.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/sitesym_database.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/hall_symbol.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/mathfunc.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/primitive.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/refinement.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/sitesym_database.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/refinement.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/site_symmetry.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/debug.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/lattice.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/symmetry.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/debug.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/lattice.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/mathfunc.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/hall_symbol.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spglib_f.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spglib.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/kpoint.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spacegroup.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/crystalpastedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/avospglib.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/crystallographyextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/crystallographyextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/avospglib.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ceundo.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ceundo.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/stablecomparison.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/crystalpastedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cematrixeditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceparametereditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimodeintegrator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimcubature.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimmathutilities.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimwavefunction.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimcubature.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/highlighter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/symmetryextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/examples/example.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/elements.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/point_group.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/msym.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/context.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symmetry.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/geometry.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/character_table.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symop.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/orbital.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/elements.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/orbital.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/character_table.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/linalg.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/permutation.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/msym.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/linalg.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/msym_error.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/geometry.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/point_group.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/permutation.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/context.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symop.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/symmetryextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povraydialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/animationdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/trajvideomaker.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/hydrogensextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmlextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/shaderextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/sortfiltertreeproxymodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/constraintsdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povpainter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/supercellextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/molecularpropextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/highlighter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/pythonterminal.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertfragmentdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertcommand.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/animationdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/constraintsmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/selectextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/hydrogensextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/cartesianextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povpainter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmlpainter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/propextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/forcefielddialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/constraintsdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2psextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectradialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectratype.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/raman.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/nmr.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/uv.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/uv.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/ir.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/vibrationwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/cd.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/dos.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/cd.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectradialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/abstract_ir.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/raman.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectraextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/abstract_ir.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectratype.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/nmr.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectraextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/ir.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/dos.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/vibrationextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/vibrationwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/vibrationextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/molecularpropextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitaltablemodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/molden.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/mopacaux.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/molecule.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/cube.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/molecule.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/cube.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gamessus.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/molden.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/basisset.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/atom.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/slaterset.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/atom.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/slaterset.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gamessukout.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/orca.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gamessus.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/basissetloader.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/qube.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/basisset.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/openqubeabi.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/orca.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gaussianset.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/molpro.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/surfaceextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/surfaceextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/htmldelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/approxmath.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/surfacedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/vdwsurface.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/htmldelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/surfacedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/vdwsurface.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/molpro.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/supercelldialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonengine_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotobject.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/animation.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonscript.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/color.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/animation.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/painterdevice.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plugin.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/zmatrix.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plugin.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/meshgenerator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glpainter_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/dockextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/mesh.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/textmatrixeditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythontool_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/toolgroup.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/moleculefile.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementtranslator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythontool_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythoninterpreter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/textrenderer_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/neighborlist.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/primitivelist.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/residue.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/painter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/textrenderer_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/cylinder_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/undosequence.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/residue.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/engine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/fragment.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/bond.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/extension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/moleculefile.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/cube.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/navigate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/molecule.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/qstring.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/primitivelist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/sip.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/neighborlist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/elementtranslator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/main.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/camera.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/periodictableview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/atom.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/primitive.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/toolgroup.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/qlist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/eigen.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/animation.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/color.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/glwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/plugin.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/meshgenerator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/mesh.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/std_vector.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/tool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/painterdevice.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/moleculelist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/painter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/swig.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/residue.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/pluginmanager.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/moleculelist.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/color3f.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/sphere_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/meshgenerator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pluginmanager.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/leastsquares.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/sphere_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/application.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/addenginedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/importdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreeeditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/updatedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineitemmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineprimitiveswidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineviewwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/updatecheck.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/flattabwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/mainwindow.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/enginecolorswidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/savedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreeeditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/importdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/primitivetreeview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/enginelistview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/detachedview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreemodeldelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreemodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginsettings.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/aboutdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/detachedview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginitemmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/moleculedelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/residuedelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/atomdelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/selectiondelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/moleculedelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/bonddelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/labeldelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/atomdelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/selectiondelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/labeldelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/residuedelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/bonddelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreemodeldelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineitemdelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/updatecheck.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineviewwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/main.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/flattabwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/addenginedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/primitiveitemmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/editcommands.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/mainwindow.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/settingsdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/application.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineprimitiveswidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreemodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/updatedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineitemmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginsettings.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginitemmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineitemdelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/editcommands.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/settingsdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreeitem.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/enginecolorswidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginlistview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/glgraphicsview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/aboutdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/primitiveitemmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/savedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/enginelistview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginlistview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreeitem.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/glgraphicsview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/primitivetreeview.h + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YuTMh8 + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.2.0 + mkdir build + pushd build ~/build/BUILD/avogadro-1.2.0/build ~/build/BUILD/avogadro-1.2.0 + export 'LDFLAGS=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_BUILD_TYPE:STRING=Release -Wno-dev -DENABLE_TESTS:BOOL=ON -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -DENABLE_RPATH:BOOL=OFF -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DENABLE_VERSIONED_PLUGIN_DIR:BOOL=OFF -DINSTALL_LIB_DIR:PATH=lib64/avogadro/extensions -DENABLE_THREADEDGL:BOOL=ON -DINSTALL_CMAKE_DIR:PATH=lib64/libmsym/cmake .. -- The C compiler identification is GNU 8.2.1 -- The CXX compiler identification is GNU 8.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The build type is Release -- Performing Test HAVE_NO_RTTI -- Performing Test HAVE_NO_RTTI - Success -- Performing Test HAVE_RTTI -- Performing Test HAVE_RTTI - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.7", minimum required is "4.6.0") -- Found OpenGL: /usr/lib64/libOpenGL.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib64/libX11.so -- Found lupdate: /usr/bin/lupdate-qt4 -- Found lrelease: /usr/bin/lrelease-qt4 -- Found lconvert: /usr/bin/lconvert -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.5.3") -- Checking for module 'openbabel-2.0>=2.3.0' -- Found openbabel-2.0, version 2.4.1 -- Found OpenBabel 2.3 or later: openbabel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Boost version: 1.66.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/lib64/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/bin/python2 (found version "2.7.15") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- SIP version 267020 found -- Found SIP: /usr/include/python2.7 -- All python dependencies found - Python support enabled -- Unit testing enabled, run make test to run them -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering enabled - needs more testing -- Setting new boost python libraries BUILDSTDERR: failed to create symbolic link '/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro//builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/config.h': No such file or directory -- Enabled python terminal -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.7", minimum required is "4.6") -- Linking in static plugins: bsdyengine;navigatetool;elementcolor -- Python site-packages directory: /usr/lib64/python2.7/site-packages -- Test: drawcommand -- Test: molecule -- Test: moleculefile -- Test: neighborlist -- Benchmark: molecule -- Found Doxygen: /usr/bin/doxygen (found version "1.8.14") found components: doxygen missing components: dot -- docbook tools not found, doc targets disabled -- Configuring done -- Generating done BUILDSTDERR: CMake Warning: BUILDSTDERR: Manually-specified variables were not used by the project: BUILDSTDERR: CMAKE_Fortran_FLAGS_RELEASE BUILDSTDERR: SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/avogadro-1.2.0/build + popd ~/build/BUILD/avogadro-1.2.0 + /usr/bin/make -O -j4 -C build make: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/cmake -H/builddir/build/BUILD/avogadro-1.2.0 -B/builddir/build/BUILD/avogadro-1.2.0/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro-1.2.0/build/CMakeFiles /builddir/build/BUILD/avogadro-1.2.0/build/CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend /usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend /usr/bin/make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 0%] Generating qrc_navigatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name navigatetool -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_navigatetool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 0%] Generating ui_bsdysettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_bsdysettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdysettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= Scanning dependencies of target msym make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 0%] Generating moc_elementcolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_elementcolor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= Scanning dependencies of target elementcolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 0%] Generating moc_navigatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 0%] Generating moc_bsdyengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Generating ui_navigatesettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/ui_navigatesettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatesettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdlib.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:14: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { BUILDSTDERR: ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= Scanning dependencies of target bsdyengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= Scanning dependencies of target navigatetool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdlib.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:16: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:34:15: warning: 'dpolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double dpolynomial [][9] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:25:15: warning: 'ppolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double ppolynomial [][3] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:21:15: warning: 'spolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double spolynomial [][1] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:16, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:16: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] BUILDSTDERR: static const char *IrreducibleRepresentationName[] = BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/elements.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/elements.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/string.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/equivalence_set.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/equivalence_set.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdlib.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c: In function 'copyEquivalenceSets': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:38:1: warning: label 'err' defined but not used [-Wunused-label] BUILDSTDERR: err: BUILDSTDERR: ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:17: BUILDSTDERR: At top level: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:34:15: warning: 'dpolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double dpolynomial [][9] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:25:15: warning: 'ppolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double ppolynomial [][3] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:21:15: warning: 'spolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double spolynomial [][1] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.h:16, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:15: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] BUILDSTDERR: static const char *IrreducibleRepresentationName[] = BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/geometry.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/geometry.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/linalg.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/linalg.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c:12: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/msym.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:16: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:34:15: warning: 'dpolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double dpolynomial [][9] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:25:15: warning: 'ppolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double ppolynomial [][3] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:21:15: warning: 'spolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double spolynomial [][1] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:16, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:16: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] BUILDSTDERR: static const char *IrreducibleRepresentationName[] = BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym_error.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/msym_error.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c:12: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/orbital.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/orbital.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdlib.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:18: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] BUILDSTDERR: static const char *IrreducibleRepresentationName[] = BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/permutation.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/permutation.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdlib.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c: In function 'findPermutationSubgroups': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:183:1: warning: label 'err' defined but not used [-Wunused-label] BUILDSTDERR: err: BUILDSTDERR: ^~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_elementcolor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_elementcolor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Linking CXX static library elementcolor.a cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 /usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o /usr/bin/ranlib elementcolor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Built target elementcolor make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/DependInfo.cmake --color= Scanning dependencies of target spglib make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/cell.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/cell.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/cell.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/debug.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/debug.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/debug.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:12: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c: In function 'findPointGroup': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:454:1: warning: label 'err' defined but not used [-Wunused-label] BUILDSTDERR: err: BUILDSTDERR: ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:19: BUILDSTDERR: At top level: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] BUILDSTDERR: static const char *IrreducibleRepresentationName[] = BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/hall_symbol.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/hall_symbol.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/hall_symbol.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/lattice.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/lattice.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/lattice.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetrize.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/symmetrize.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdlib.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c: In function 'symmetrizeTranslation': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:222:1: warning: label 'err' defined but not used [-Wunused-label] BUILDSTDERR: err: BUILDSTDERR: ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:17: BUILDSTDERR: At top level: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:34:15: warning: 'dpolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double dpolynomial [][9] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:25:15: warning: 'ppolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double ppolynomial [][3] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:21:15: warning: 'spolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double spolynomial [][1] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:16: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] BUILDSTDERR: static const char *IrreducibleRepresentationName[] = BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/mathfunc.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/mathfunc.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/mathfunc.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/pointgroup.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/pointgroup.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/pointgroup.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/primitive.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/primitive.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/primitive.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetry.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/symmetry.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.h:16, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.h:15, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c: In function 'findSymmetryPlanarRegular': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:196:110: warning: variable 'split' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int sigma_h = vzero(cm,thresholds->zero), order = es->length, prim = 2, div_len, even, inversion, n = 0, split = 0; BUILDSTDERR: ^~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c: In function 'findSymmetrySymmetricPolyhedron': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:378:71: warning: variable 'theta_sigma' set but not used [-Wunused-but-set-variable] BUILDSTDERR: double v0[3], v0_proj[3], v_init[3], dot0, theta, theta_C2 = 0.0, theta_sigma = 0.0; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c: In function 'findSymmetrySpherical': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:636:1: warning: label 'err' defined but not used [-Wunused-label] BUILDSTDERR: err: BUILDSTDERR: ^~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c: In function 'findSymmetryCubic': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:650:122: warning: variable 'ecb' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int found = 0, nsigma = 0, esigma = 0, inversion = 0, nc[6] = {0,0,0,0,0,0}, ec[6] = {0,0,0,0,0,0}, *ncb = &nsigma, *ecb = &esigma,*nc3b = &nsigma; BUILDSTDERR: ^~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c: In function 'filterSymmetryOperations': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:1204:1: warning: label 'err' defined but not used [-Wunused-label] BUILDSTDERR: err: BUILDSTDERR: ^~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.h:16, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:16: BUILDSTDERR: At top level: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] BUILDSTDERR: static const char *IrreducibleRepresentationName[] = BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symop.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/symop.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/math.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:11: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:14: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:34:15: warning: 'dpolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double dpolynomial [][9] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:25:15: warning: 'ppolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double ppolynomial [][3] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:21:15: warning: 'spolynomial' defined but not used [-Wunused-variable] BUILDSTDERR: static double spolynomial [][1] = { BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:16, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:14: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] BUILDSTDERR: static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] BUILDSTDERR: static const char *IrreducibleRepresentationName[] = BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/refinement.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/refinement.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/refinement.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Linking C shared library ../../../../../lib64/libmsym.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -E cmake_link_script CMakeFiles/msym.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c99 -DNDEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -Wl,-soname,libmsym.so -o ../../../../../lib64/libmsym.so CMakeFiles/msym.dir/src/character_table.c.o CMakeFiles/msym.dir/src/context.c.o CMakeFiles/msym.dir/src/elements.c.o CMakeFiles/msym.dir/src/equivalence_set.c.o CMakeFiles/msym.dir/src/geometry.c.o CMakeFiles/msym.dir/src/linalg.c.o CMakeFiles/msym.dir/src/msym.c.o CMakeFiles/msym.dir/src/msym_error.c.o CMakeFiles/msym.dir/src/orbital.c.o CMakeFiles/msym.dir/src/permutation.c.o CMakeFiles/msym.dir/src/point_group.c.o CMakeFiles/msym.dir/src/symmetrize.c.o CMakeFiles/msym.dir/src/symmetry.c.o CMakeFiles/msym.dir/src/symop.c.o -L/usr/usr/lib64 make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Built target msym make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Generating moc_slaterset.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Generating moc_basisset.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Generating moc_gaussianset.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= Scanning dependencies of target OpenQube make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/atom.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/bits/stl_algobase.h:59, BUILDSTDERR: from /usr/include/c++/8/vector:60, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp:17: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/new:39, BUILDSTDERR: from /usr/include/eigen3/Eigen/Core:82, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/new:39, BUILDSTDERR: from /usr/include/eigen3/Eigen/Core:82, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basissetloader.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/new:39, BUILDSTDERR: from /usr/include/eigen3/Eigen/Core:82, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_navigatetool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_navigatetool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_navigatetool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Linking CXX static library navigatetool.a cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 /usr/bin/ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o /usr/bin/ranlib navigatetool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Built target navigatetool make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= Scanning dependencies of target tubegen make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Bitmap.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/tubegen.dir/Bitmap.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/tubegen.dir/eprintf.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/bits/stl_algobase.h:59, BUILDSTDERR: from /usr/include/c++/8/vector:60, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp:17: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 5%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/Cell.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_bsdyengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 5%] Linking CXX static library bsdyengine.a cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 /usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o /usr/bin/ranlib bsdyengine.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 5%] Built target bsdyengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spacegroup.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spacegroup.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spacegroup.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spg_database.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spg_database.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spg_database.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spglib.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spglib.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spglib.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 5%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/symmetry.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/symmetry.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/symmetry.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/kpoint.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/kpoint.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/kpoint.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/site_symmetry.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/site_symmetry.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/site_symmetry.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/sitesym_database.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/sitesym_database.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/sitesym_database.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spglib_f.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spglib_f.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spglib_f.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spin.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spin.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spin.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/tetrahedron_method.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/tetrahedron_method.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/tetrahedron_method.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Linking C static library libspglib.a cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -P CMakeFiles/spglib.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -E cmake_link_script CMakeFiles/spglib.dir/link.txt --verbose=1 /usr/bin/ar qc libspglib.a CMakeFiles/spglib.dir/cell.c.o CMakeFiles/spglib.dir/debug.c.o CMakeFiles/spglib.dir/hall_symbol.c.o CMakeFiles/spglib.dir/lattice.c.o CMakeFiles/spglib.dir/mathfunc.c.o CMakeFiles/spglib.dir/pointgroup.c.o CMakeFiles/spglib.dir/primitive.c.o CMakeFiles/spglib.dir/refinement.c.o CMakeFiles/spglib.dir/spacegroup.c.o CMakeFiles/spglib.dir/spg_database.c.o CMakeFiles/spglib.dir/spglib.c.o CMakeFiles/spglib.dir/symmetry.c.o CMakeFiles/spglib.dir/kpoint.c.o CMakeFiles/spglib.dir/site_symmetry.c.o CMakeFiles/spglib.dir/sitesym_database.c.o CMakeFiles/spglib.dir/spglib_f.c.o CMakeFiles/spglib.dir/spin.c.o CMakeFiles/spglib.dir/tetrahedron_method.c.o /usr/bin/ranlib libspglib.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Built target spglib make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 6%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qiodevice.h:46, BUILDSTDERR: from /usr/include/QtCore/QIODevice:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/DependInfo.cmake --color= Scanning dependencies of target moleculefiletestmoc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Generating moc_drawcommandtest.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/moc_drawcommandtest.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Generating moc_moleculetest.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/moc_moleculetest.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Generating moc_moleculefiletest.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/moc_moleculefiletest.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Built target moleculefiletestmoc make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/new:39, BUILDSTDERR: from /usr/include/eigen3/Eigen/Core:82, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp:17: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp: In member function 'void OpenQube::GamessukOut::readBasisSet(std::ifstream&)': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp:497:15: warning: 'stype' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: lastStype = stype; BUILDSTDERR: ~~~~~~~~~~^~~~~~~ /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculetestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculetestmoc.dir/DependInfo.cmake --color= Scanning dependencies of target moleculetestmoc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Built target moleculetestmoc make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Linking CXX static library libtubegen.a cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 /usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o /usr/bin/ranlib libtubegen.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Built target tubegen make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/DependInfo.cmake --color= Scanning dependencies of target neighborlisttestmoc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Generating moc_neighborlisttest.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/moc_neighborlisttest.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Built target neighborlisttestmoc make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qiodevice.h:46, BUILDSTDERR: from /usr/include/QtCore/QIODevice:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp:17: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/DependInfo.cmake --color= Scanning dependencies of target moleculebenchmoc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 8%] Generating moc_moleculebench.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/moc_moleculebench.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 8%] Built target moleculebenchmoc make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/DependInfo.cmake --color= Scanning dependencies of target drawcommandtestmoc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 8%] Built target drawcommandtestmoc make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 8%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/new:39, BUILDSTDERR: from /usr/include/eigen3/Eigen/Core:82, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp:17: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 7%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/new:39, BUILDSTDERR: from /usr/include/eigen3/Eigen/Core:82, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp: In member function 'void OpenQube::MoldenFile::unnormalizeBasis()': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp:259:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for (int i=0;iwidget->normalVector(); BUILDSTDERR: ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/neighborlist.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/painter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/painter.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp:28: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qgraphicsscene.h:45, BUILDSTDERR: from /usr/include/QtGui/QGraphicsScene:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qchar.h:45, BUILDSTDERR: from /usr/include/QtCore/qstring.h:45, BUILDSTDERR: from /usr/include/QtCore/QString:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.cpp:29: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:39: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/leastsquares.h: In instantiation of 'void Avogadro::fitHyperplane(int, VectorType**, HyperplaneType*, typename Eigen::NumTraits::Real*) [with VectorType = Eigen::Matrix; HyperplaneType = Eigen::Hyperplane; typename Eigen::NumTraits::Real = double]': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:1911:62: required from here BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/leastsquares.h:54:14: warning: variable 'remean' set but not used [-Wunused-but-set-variable] BUILDSTDERR: VectorType remean = VectorType::Zero(size); BUILDSTDERR: ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotpoint.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.cpp:29: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qchar.h:45, BUILDSTDERR: from /usr/include/QtCore/qstring.h:45, BUILDSTDERR: from /usr/include/QtCore/QString:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.cpp:29: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plugin.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qchar.h:45, BUILDSTDERR: from /usr/include/QtCore/qstring.h:45, BUILDSTDERR: from /usr/include/QtCore/QString:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plotaxis.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.cpp:29: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/residue.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/residue.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/readfilethread_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qthread.h:45, BUILDSTDERR: from /usr/include/QtCore/QThread:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/protein.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/protein.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qundostack.h:45, BUILDSTDERR: from /usr/include/QtGui/QUndoCommand:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/tool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tool.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/zmatrix.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonscript.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonerror.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/pythonerror.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonerror.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/animation.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_animation.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_atom.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/atom.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_atom.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythontool_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_bond.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_bond.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/bond.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_bond.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_color.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_color.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_color.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/color.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_color.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_colorbutton.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/colorbutton.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_colorbutton.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/dockextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_cube.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_cube.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/cube.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_cube.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockwidget.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_dockwidget.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:33, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementtranslator.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/elementtranslator.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementtranslator.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementdetail_p.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtGui/qgraphicsitem.h:45, BUILDSTDERR: from /usr/include/QtGui/QGraphicsItem:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/elementdetail_p.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_elementdetail_p.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_extension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_extension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_extension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_extension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_fragment.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/fragment.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_fragment.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_engine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_engine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/engine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_engine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_mesh.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_mesh.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/mesh.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_mesh.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_glwidget.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/meshgenerator.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_meshgenerator.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_molecule.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_molecule.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictablescene_p.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qgraphicsscene.h:45, BUILDSTDERR: from /usr/include/QtGui/QGraphicsScene:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/periodictablescene_p.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictablescene_p.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/moleculefile.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_moleculefile.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictableview.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/periodictableview.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_periodictableview.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plugin.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_plugin.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plugin.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plugin.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plotwidget.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qchar.h:45, BUILDSTDERR: from /usr/include/QtCore/qstring.h:45, BUILDSTDERR: from /usr/include/QtCore/QString:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plotaxis.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/plotwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_plotwidget.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pluginmanager.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pluginmanager.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pluginmanager.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_protein.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/protein.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_protein.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_primitive.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_readfilethread_p.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qthread.h:45, BUILDSTDERR: from /usr/include/QtCore/QThread:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/readfilethread_p.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_readfilethread_p.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/fragment.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/residue.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_residue.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_tool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/tool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_tool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_toolgroup.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/toolgroup.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_toolgroup.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_zmatrix.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/zmatrix.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_zmatrix.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_textmatrixeditor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonerror.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonerror.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonerror.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/qrc_pythontool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/qrc_pythontool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonengine_p.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythontool_p.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythontool_p.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythontool_p.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:33, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/moc_pythonextension_p.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 27%] Linking CXX shared library ../../lib64/libavogadro.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -Wl,-soname,libavogadro.so.1 -o ../../lib64/libavogadro.so.1.2.0 CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/dockextension.cpp.o CMakeFiles/avogadro.dir/dockwidget.cpp.o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o CMakeFiles/avogadro.dir/elementitem_p.cpp.o CMakeFiles/avogadro.dir/elementtranslator.cpp.o CMakeFiles/avogadro.dir/engine.cpp.o CMakeFiles/avogadro.dir/extension.cpp.o CMakeFiles/avogadro.dir/fragment.cpp.o CMakeFiles/avogadro.dir/glhit.cpp.o CMakeFiles/avogadro.dir/global.cpp.o CMakeFiles/avogadro.dir/glpainter_p.cpp.o CMakeFiles/avogadro.dir/glwidget.cpp.o CMakeFiles/avogadro.dir/idlist.cpp.o CMakeFiles/avogadro.dir/mesh.cpp.o CMakeFiles/avogadro.dir/meshgenerator.cpp.o CMakeFiles/avogadro.dir/molecule.cpp.o CMakeFiles/avogadro.dir/moleculefile.cpp.o CMakeFiles/avogadro.dir/navigate.cpp.o CMakeFiles/avogadro.dir/neighborlist.cpp.o CMakeFiles/avogadro.dir/painter.cpp.o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o CMakeFiles/avogadro.dir/periodictableview.cpp.o CMakeFiles/avogadro.dir/plotaxis.cpp.o CMakeFiles/avogadro.dir/plotobject.cpp.o CMakeFiles/avogadro.dir/plotpoint.cpp.o CMakeFiles/avogadro.dir/plotwidget.cpp.o CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/moc_animation.cxx.o CMakeFiles/avogadro.dir/moc_atom.cxx.o CMakeFiles/avogadro.dir/moc_bond.cxx.o CMakeFiles/avogadro.dir/moc_color.cxx.o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o CMakeFiles/avogadro.dir/moc_cube.cxx.o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o CMakeFiles/avogadro.dir/moc_engine.cxx.o CMakeFiles/avogadro.dir/moc_extension.cxx.o CMakeFiles/avogadro.dir/moc_fragment.cxx.o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o CMakeFiles/avogadro.dir/moc_mesh.cxx.o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o CMakeFiles/avogadro.dir/moc_molecule.cxx.o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o CMakeFiles/avogadro.dir/moc_plugin.cxx.o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o CMakeFiles/avogadro.dir/moc_primitive.cxx.o CMakeFiles/avogadro.dir/moc_protein.cxx.o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o CMakeFiles/avogadro.dir/moc_residue.cxx.o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o CMakeFiles/avogadro.dir/moc_tool.cxx.o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64: -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lGL -lGLU -lGLEW -lpython2.7 -lboost_python engines/bsdyengine.a tools/navigatetool.a colors/elementcolor.a -lopenbabel -lQtGui -lQtCore -lGL -lGLU cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src && /usr/bin/cmake -E cmake_symlink_library ../../lib64/libavogadro.so.1.2.0 ../../lib64/libavogadro.so.1 ../../lib64/libavogadro.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 27%] Built target avogadro make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Generating ui_ribbonsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_ribbonsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonsettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Generating ui_qtaimsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_qtaimsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimsettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Generating ui_hbondsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_hbondsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondsettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Generating moc_forceengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Generating moc_qtaimengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Generating moc_ribbonengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Generating moc_hbondengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= Scanning dependencies of target forceengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= Scanning dependencies of target hbondengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= Scanning dependencies of target ribbonengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= Scanning dependencies of target qtaimengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforceengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforceengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_forceengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Linking CXX shared module ../../../lib64/forceengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Built target forceengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Generating ui_wiresettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_wiresettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wiresettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Generating moc_wireengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= Scanning dependencies of target wireengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ribbonengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Linking CXX shared module ../../../lib64/ribbonengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Built target ribbonengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_hbondengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Linking CXX shared module ../../../lib64/hbondengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Built target hbondengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Generating ui_sticksettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_sticksettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/sticksettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Generating moc_stickengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= Scanning dependencies of target stickengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_qtaimengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dwireengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_wireengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 31%] Generating ui_cartoonsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_cartoonsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonsettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 31%] Generating moc_cartoonengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= Scanning dependencies of target cartoonengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 31%] Linking CXX shared module ../../../lib64/qtaimengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 31%] Built target qtaimengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 32%] Generating ui_labelsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_labelsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 32%] Generating moc_labelengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= Scanning dependencies of target labelengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dwireengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 33%] Linking CXX shared module ../../../lib64/wireengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 33%] Built target wireengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dstickengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dstickengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_stickengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Linking CXX shared module ../../../lib64/stickengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_cartoonengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Built target stickengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Generating ui_ringsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_ringsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringsettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Generating moc_polygonengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Generating moc_ringengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= Scanning dependencies of target polygonengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= Scanning dependencies of target ringengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dringengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Linking CXX shared module ../../../lib64/cartoonengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Built target cartoonengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Generating ui_spheresettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_spheresettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/spheresettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 36%] Generating moc_sphereengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= Scanning dependencies of target sphereengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_polygonengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 36%] Linking CXX shared module ../../../lib64/polygonengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 36%] Built target polygonengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dringengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_ringengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 36%] Linking CXX shared module ../../../lib64/ringengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 36%] Built target ringengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 37%] Generating ui_surfacesettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_surfacesettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 37%] Generating moc_surfaceengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 36%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_sphereengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 37%] Generating ui_axessettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_axessettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Generating moc_axesengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= Scanning dependencies of target axesengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 36%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Linking CXX shared module ../../../lib64/sphereengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Built target sphereengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 36%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_labelengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Linking CXX shared module ../../../lib64/labelengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 37%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_surfaceengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Built target labelengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Generating ui_dipolesettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/ui_dipolesettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Generating moc_dipoleengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= Scanning dependencies of target dipoleengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Linking CXX shared module ../../../lib64/surfaceengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daxesengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Built target surfaceengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Generating qrc_selectrotatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name selectrotatetool -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_selectrotatetool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Generating moc_simplewireengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Generating moc_selectrotatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target simplewireengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target selectrotatetool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daxesengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_axesengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Linking CXX shared module ../../../lib64/axesengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Built target axesengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_simplewireengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Linking CXX shared module ../../../lib64/simplewireengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Built target simplewireengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/moc_dipoleengine.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_selectrotatetool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Generating qrc_autorotatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name autorotatetool -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autorotatetool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Generating moc_autorotatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target autorotatetool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Linking CXX shared module ../../../lib64/dipoleengine.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Built target dipoleengine make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Generating qrc_clickmeasuretool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name clickmeasuretool -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Generating moc_clickmeasuretool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= Scanning dependencies of target clickmeasuretool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Generating qrc_bondcentrictool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name bondcentrictool -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_bondcentrictool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Generating moc_bondcentrictool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_selectrotatetool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Generating moc_skeletontree.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= Scanning dependencies of target bondcentrictool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Linking CXX shared module ../../../lib64/selectrotatetool.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Built target selectrotatetool make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Generating qrc_autoopttool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name autoopttool -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autoopttool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Generating moc_autoopttool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= Scanning dependencies of target autoopttool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autorotatetool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autorotatetool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autorotatetool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 41%] Linking CXX shared module ../../../lib64/autorotatetool.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 41%] Built target autorotatetool make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 41%] Generating qrc_drawtool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name drawtool -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_drawtool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Generating moc_drawtool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_drawtool.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= Scanning dependencies of target drawtool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Linking CXX shared module ../../../lib64/clickmeasuretool.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Built target clickmeasuretool make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qundostack.h:45, BUILDSTDERR: from /usr/include/QtGui/QUndoCommand:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp: In constructor 'Avogadro::AddBondDrawCommandPrivate::AddBondDrawCommandPrivate()': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:533:53: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] BUILDSTDERR: postCommandEnd(0) {} BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:533:53: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_drawtool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_drawtool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_autoopttool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Generating qrc_aligntool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name aligntool -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_aligntool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autoopttool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_autoopttool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Generating moc_aligntool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_aligntool.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= Scanning dependencies of target aligntool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_drawtool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_drawtool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Linking CXX shared module ../../../lib64/autoopttool.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Built target autoopttool make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Generating qrc_manipulatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name manipulatetool -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_manipulatetool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Linking CXX shared module ../../../lib64/drawtool.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Generating moc_manipulatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Built target drawtool make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Generating ui_manipulatesettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/ui_manipulatesettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Generating moc_gl2psextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_gl2psextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= Scanning dependencies of target manipulatetool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= Scanning dependencies of target gl2psextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -fPIC -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/stdio.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.h:39, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:36: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c: In function 'gl2psPrintPrimitives': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:2304:11: warning: 'ofactor' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: gl2psAddPolyPrimitive(GL2PS_TRIANGLE, 3, vertices, offset, ofactor, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ounits, pattern, factor, 1, flag); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:2247:40: note: 'ofactor' was declared here BUILDSTDERR: GLfloat lwidth = 1.0F, psize = 1.0F, ofactor, ounits; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:2304:11: warning: 'ounits' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: gl2psAddPolyPrimitive(GL2PS_TRIANGLE, 3, vertices, offset, ofactor, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ounits, pattern, factor, 1, flag); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:2247:49: note: 'ounits' was declared here BUILDSTDERR: GLfloat lwidth = 1.0F, psize = 1.0F, ofactor, ounits; BUILDSTDERR: ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daligntool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp: In member function 'void Avogadro::AlignTool::align()': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:256:16: warning: 'axis' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: Vector3d axis; BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:256:16: warning: '*((void*)& axis +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:256:16: warning: '*((void*)& axis +16)' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_gl2psextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gl2psextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_gl2psextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daligntool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_aligntool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/tool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_aligntool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Linking CXX shared module ../../../lib64/gl2psextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Built target gl2psextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daligntool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_aligntool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_aligntool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Linking CXX shared module ../../../lib64/aligntool.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Built target aligntool make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp: In member function 'virtual QUndoCommand* Avogadro::BondCentricTool::mouseMoveEvent(Avogadro::GLWidget*, QMouseEvent*)': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:579:20: warning: variable 'clicked' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Vector3d clicked = *m_clickedAtom->pos(); BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:679:20: warning: variable 'clicked' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Vector3d clicked = *m_clickedAtom->pos(); BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qundostack.h:45, BUILDSTDERR: from /usr/include/QtGui/QUndoCommand:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_manipulatetool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Generating ui_supercelldialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_supercelldialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Generating moc_supercellextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercellextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Generating moc_supercelldialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_manipulatetool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_manipulatetool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/new:39, BUILDSTDERR: from /usr/include/eigen3/Eigen/Core:82, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_supercelldialog.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp:20: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Linking CXX shared module ../../../lib64/manipulatetool.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Built target manipulatetool make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Generating ui_shaderdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_shaderdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 45%] Generating moc_shaderextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_shaderextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target shaderextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercellextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercellextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercelldialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_supercelldialog.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_supercelldialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 45%] Generating ui_fileimportdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_fileimportdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 45%] Generating moc_fileimportextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= Scanning dependencies of target fileimportextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 45%] Linking CXX shared module ../../../lib64/supercellextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 45%] Built target supercellextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_fileimportextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_fileimportdialog.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_fileimportextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Generating moc_h2methylextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= Scanning dependencies of target h2methylextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_bondcentrictool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_shaderextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_shaderextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Linking CXX shared module ../../../lib64/shaderextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lGLEW make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Built target shaderextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Generating ui_molecularpropdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_molecularpropdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_fileimportdialog.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Generating moc_molecularpropextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= Scanning dependencies of target molecularpropextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Linking CXX shared module ../../../lib64/fileimportextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Built target fileimportextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Generating moc_propextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Generating __/tools/moc_skeletontree.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Generating moc_propmodel.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= Scanning dependencies of target propextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_h2methylextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_h2methylextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Linking CXX shared module ../../../lib64/h2methylextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Built target h2methylextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/moc_skeletontree.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_bondcentrictool.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Linking CXX shared module ../../../lib64/bondcentrictool.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Built target bondcentrictool make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Generating moc_invertchiralextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= Scanning dependencies of target invertchiralextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Linking CXX shared module ../../../lib64/molecularpropextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Built target molecularpropextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Generating qrc_cartesianextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/rcc -name cartesianextension -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_cartesianextension.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Generating moc_cartesianextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 48%] Generating ui_cartesianeditor.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_cartesianeditor.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianeditor.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= Scanning dependencies of target cartesianextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp:20: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/cmath:41, BUILDSTDERR: from /usr/include/c++/8/math.h:36, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/mol.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_invertchiralextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 48%] Linking CXX shared module ../../../lib64/invertchiralextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 48%] Built target invertchiralextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating ui_pythonterminalwidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_pythonterminalwidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminalwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating moc_pythonterminal.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating moc_highlighter.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_highlighter.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= Scanning dependencies of target pythonterminal make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/cmath:41, BUILDSTDERR: from /usr/include/c++/8/math.h:36, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/mol.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtGui/qsyntaxhighlighter.h:45, BUILDSTDERR: from /usr/include/QtGui/QSyntaxHighlighter:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/highlighter.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_cartesianextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_cartesianextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_cartesianextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Linking CXX shared module ../../../lib64/cartesianextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/cmath:41, BUILDSTDERR: from /usr/include/c++/8/math.h:36, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/mol.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propmodel.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Built target cartesianextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating ui_conformersearchdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_conformersearchdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/cmath:41, BUILDSTDERR: from /usr/include/c++/8/math.h:36, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/mol.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_propextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating moc_forcefieldextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating moc_forcefielddialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating moc_constraintsdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating moc_constraintsmodel.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating moc_conformersearchdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating ui_forcefielddialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_forcefielddialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Generating ui_constraintsdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_constraintsdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= Scanning dependencies of target forcefieldextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Linking CXX shared module ../../../lib64/propextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_highlighter.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtGui/qsyntaxhighlighter.h:45, BUILDSTDERR: from /usr/include/QtGui/QSyntaxHighlighter:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_highlighter.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Built target propextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Generating ui_insertpeptidedialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_insertpeptidedialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptidedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 50%] Generating moc_selectextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_selectextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Generating moc_insertpeptideextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= Scanning dependencies of target selectextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertpeptideextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_pythonterminal.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_pythonterminal.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Linking CXX shared module ../../../lib64/pythonterminal.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Built target pythonterminal make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_selectextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_selectextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:24: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Linking CXX shared module ../../../lib64/selectextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Built target selectextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Generating moc_hydrogensextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= Scanning dependencies of target hydrogensextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qundostack.h:45, BUILDSTDERR: from /usr/include/QtGui/QUndoCommand:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 52%] Linking CXX shared module ../../../lib64/insertpeptideextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 52%] Built target insertpeptideextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 52%] Generating ui_insertdnadialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_insertdnadialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnadialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 53%] Generating moc_insertdnaextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertdnaextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 54%] Generating moc_networkfetchextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= Scanning dependencies of target networkfetchextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 54%] Linking CXX shared module ../../../lib64/hydrogensextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 54%] Built target hydrogensextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qundostack.h:45, BUILDSTDERR: from /usr/include/QtGui/QUndoCommand:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 55%] Generating qrc_animationextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/rcc -name animationextension -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_animationextension.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 55%] Generating moc_animationextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 55%] Generating moc_animationdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 55%] Generating ui_animationdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_animationdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= Scanning dependencies of target animationextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_networkfetchextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 55%] Linking CXX shared module ../../../lib64/networkfetchextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 55%] Built target networkfetchextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 55%] Generating ui_povraydialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_povraydialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertdnaextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertdnaextension.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertdnaextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Generating moc_povrayextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povrayextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Generating moc_povraydialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povraydialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= Scanning dependencies of target povrayextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Linking CXX shared module ../../../lib64/insertdnaextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Built target insertdnaextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/bits/stl_algobase.h:59, BUILDSTDERR: from /usr/include/c++/8/vector:60, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Generating ui_insertfragmentdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_insertfragmentdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Generating moc_insertfragmentextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Generating moc_insertfragmentdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Generating moc_sortfiltertreeproxymodel.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp:24: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertfragmentextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qundostack.h:45, BUILDSTDERR: from /usr/include/QtGui/QUndoCommand:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povrayextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povrayextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/qabstractitemmodel.h:45, BUILDSTDERR: from /usr/include/QtGui/qabstractproxymodel.h:45, BUILDSTDERR: from /usr/include/QtGui/qsortfilterproxymodel.h:45, BUILDSTDERR: from /usr/include/QtGui/QSortFilterProxyModel:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povraydialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_povraydialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_animationdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Linking CXX shared module ../../../lib64/povrayextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Built target povrayextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/bits/stl_algobase.h:59, BUILDSTDERR: from /usr/include/c++/8/vector:60, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_animationextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qrc_animationextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Linking CXX shared module ../../../lib64/animationextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/qabstractitemmodel.h:45, BUILDSTDERR: from /usr/include/QtGui/qabstractproxymodel.h:45, BUILDSTDERR: from /usr/include/QtGui/qsortfilterproxymodel.h:45, BUILDSTDERR: from /usr/include/QtGui/QSortFilterProxyModel:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Built target animationextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Generating ui_vrmldialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/ui_vrmldialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Generating ui_symmetrydialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetrydialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Generating moc_vrmlextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Generating moc_symmetryextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= Scanning dependencies of target symmetryextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Generating moc_vrmldialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= Scanning dependencies of target vrmlextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Linking CXX shared module ../../../lib64/insertfragmentextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Built target insertfragmentextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Linking CXX shared module ../../../../lib64/symmetryextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU ../../../../lib64/libmsym.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Built target symmetryextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmlextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmlextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefielddialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Generating ui_ceviewoptionswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Generating moc_crystallographyextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Generating moc_crystalpastedialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Generating ui/moc_ceabstractdockwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Generating ui/moc_ceabstracteditor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Generating ui/moc_cecoordinateeditor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Generating ui/moc_cematrixeditor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Generating ui/moc_ceparametereditor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 59%] Generating ui/moc_ceslabbuilder.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 59%] Generating ui/moc_cetranslatewidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 59%] Generating ui/moc_ceviewoptionswidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 59%] Generating ui_crystalpastedialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 59%] Generating ui_cecoordinateeditor.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 59%] Generating ui_cematrixeditor.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 59%] Generating ui_ceparametereditor.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 59%] Generating ui_ceslabbuilder.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 59%] Generating ui_cetranslatewidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= Scanning dependencies of target crystallographyextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:4, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp: In member function 'void Avogadro::VRMLPainterDevice::initializeVRML()': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:425:12: warning: variable 'cameraT' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Vector3d cameraT = -(m_glwidget->camera()->modelview().linear().adjoint() BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:428:12: warning: variable 'cameraX' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Vector3d cameraX = m_glwidget->camera()->backTransformedXAxis(); BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:429:12: warning: variable 'cameraY' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Vector3d cameraY = m_glwidget->camera()->backTransformedYAxis(); BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:430:12: warning: variable 'cameraZ' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Vector3d cameraZ = -m_glwidget->camera()->backTransformedZAxis(); BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:440:12: warning: variable 'light0pos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Vector3d light0pos = huge * (m_glwidget->camera()->modelview().linear().adjoint() BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:444:12: warning: variable 'light1pos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Vector3d light1pos = huge * (m_glwidget->camera()->modelview().linear().adjoint() BUILDSTDERR: ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/new:39, BUILDSTDERR: from /usr/include/eigen3/Eigen/Core:82, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp:18: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmldialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_vrmldialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Linking CXX shared module ../../../lib64/vrmlextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Built target vrmlextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/bits/stl_algobase.h:59, BUILDSTDERR: from /usr/include/c++/8/vector:60, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Generating ui_tab_cd.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_tab_cd.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_cd.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Generating moc_spectraextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Generating moc_spectradialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Generating moc_spectratype.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Generating moc_abstract_ir.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Generating moc_ir.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Generating moc_nmr.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Generating moc_dos.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 61%] Generating moc_uv.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 61%] Generating moc_cd.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 61%] Generating moc_raman.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 61%] Generating ui_spectradialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_spectradialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 61%] Generating ui_tab_ir_raman.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_ir_raman.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 61%] Generating ui_tab_nmr.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_tab_nmr.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_nmr.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 61%] Generating ui_tab_dos.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_tab_dos.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_dos.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 61%] Generating ui_tab_uv.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_tab_uv.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_uv.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= Scanning dependencies of target spectraextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Generating ui_vibrationwidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Generating moc_vibrationextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Generating moc_vibrationwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= Scanning dependencies of target vibrationextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/bits/stl_algobase.h:59, BUILDSTDERR: from /usr/include/c++/8/vector:60, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Linking CXX shared module ../../../lib64/forcefieldextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Built target forcefieldextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/QWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Generating ui_orbitalsettingsdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Generating moc_orbitalextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Generating moc_orbitalsettingsdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Generating moc_orbitaltablemodel.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Generating moc_orbitalwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Generating moc_vdwsurface.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Generating qtiocompressor/moc_qtiocompressor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Generating moc_htmldelegate.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Generating ui_orbitalwidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= Scanning dependencies of target orbitalextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp:20: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp:21: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/QWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qhash.h:45, BUILDSTDERR: from /usr/include/QtCore/QHash:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp:20: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qiodevice.h:46, BUILDSTDERR: from /usr/include/QtCore/QIODevice:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/string:38, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/generic.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp:20: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qabstractitemdelegate.h:45, BUILDSTDERR: from /usr/include/QtGui/qstyleditemdelegate.h:45, BUILDSTDERR: from /usr/include/QtGui/QStyledItemDelegate:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/string:38, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/generic.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:20: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/string:38, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/generic.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:20: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/QWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 66%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qiodevice.h:46, BUILDSTDERR: from /usr/include/QtCore/QIODevice:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/string:38, BUILDSTDERR: from /usr/include/openbabel-2.0/openbabel/generic.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp:20: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qabstractitemdelegate.h:45, BUILDSTDERR: from /usr/include/QtGui/qstyleditemdelegate.h:45, BUILDSTDERR: from /usr/include/QtGui/QStyledItemDelegate:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Linking CXX shared module ../../../../lib64/orbitalextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro_OpenQube.so.0.1.0 ../../../../lib64/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Built target orbitalextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/QWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Generating ui_surfacedialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Generating moc_surfaceextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Generating moc_surfacedialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectraextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/QWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectradialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/QWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Linking CXX shared module ../../../../lib64/vibrationextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Built target vibrationextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 66%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectratype.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Generating ui_swcntbuilderwidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Generating moc_swcntbuilderextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Generating moc_swcntbuilderwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Generating moc_avotubegen.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= Scanning dependencies of target swcntbuilderextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qundostack.h:45, BUILDSTDERR: from /usr/include/QtGui/QUndoCommand:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_ir.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_ir.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_nmr.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qhash.h:45, BUILDSTDERR: from /usr/include/QtCore/QHash:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_dos.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qhash.h:45, BUILDSTDERR: from /usr/include/QtCore/QHash:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_dos.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 70%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 70%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_uv.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qhash.h:45, BUILDSTDERR: from /usr/include/QtCore/QHash:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_uv.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 70%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Linking CXX shared module ../../../../lib64/swcntbuilderextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU tubegen/libtubegen.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Built target swcntbuilderextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Generating moc_qtaimextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= Scanning dependencies of target qtaimextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdockwidget.h:45, BUILDSTDERR: from /usr/include/QtGui/QDockWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qiodevice.h:46, BUILDSTDERR: from /usr/include/QtCore/QIODevice:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_cd.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qhash.h:45, BUILDSTDERR: from /usr/include/QtCore/QHash:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_cd.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Linking CXX shared module ../../../../lib64/crystallographyextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU spglib/libspglib.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Built target crystallographyextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_raman.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/moc_raman.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qiodevice.h:46, BUILDSTDERR: from /usr/include/QtCore/QIODevice:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 72%] Linking CXX shared module ../../../../lib64/surfaceextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro_OpenQube.so.0.1.0 ../../../../lib64/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 72%] Linking CXX shared module ../../../../lib64/spectraextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qalgorithms.h:45, BUILDSTDERR: from /usr/include/QtCore/qdebug.h:45, BUILDSTDERR: from /usr/include/QtCore/QDebug:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 72%] Built target spectraextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 72%] Built target surfaceextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 72%] Generating ui_gamessefpmatchdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 72%] Generating ui_orcaspectra.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/ui_orcaspectra.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 72%] Generating ui_lammpsinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 73%] Generating moc_inputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 73%] Generating moc_orcaextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcaextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 73%] Generating moc_inputfileextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 74%] Generating moc_orcainputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 74%] Generating moc_inputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 73%] Generating moc_gamessextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_gamessinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_abinitinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 74%] Generating moc_orcaanalysedialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_gamesshighlighter.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_daltoninputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_gamessefpmatchdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_gamessukinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_orcaspectra.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcaspectra.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating ui_gamessinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating ui_orcainputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/ui_orcainputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget2'. BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget3'. BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget4'. BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget5'. BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget6'. BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget7'. BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget8'. BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget9'. BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget10'. BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget11'. make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating ui_orcaanalysedialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/ui_orcaanalysedialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_gaussianinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= Scanning dependencies of target gamessextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_molproinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= Scanning dependencies of target orcaextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_mopacinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_nwcheminputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_psi4inputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_qcheminputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Generating moc_teracheminputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 76%] Generating moc_lammpsinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 76%] Generating ui_abinitinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 76%] Generating ui_gaussianinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 76%] Generating ui_daltoninputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 76%] Generating ui_gamessukinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 76%] Generating ui_molproinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 76%] Generating ui_mopacinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 76%] Generating ui_nwcheminputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 76%] Generating ui_psi4inputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 76%] Generating ui_qcheminputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Generating ui_teracheminputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= Scanning dependencies of target inputfileextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 75%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/orcaextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 72%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/cmath:41, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qalgorithms.h:45, BUILDSTDERR: from /usr/include/QtCore/qdebug.h:45, BUILDSTDERR: from /usr/include/QtCore/QDebug:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qalgorithms.h:45, BUILDSTDERR: from /usr/include/QtCore/qdebug.h:45, BUILDSTDERR: from /usr/include/QtCore/QDebug:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qiodevice.h:46, BUILDSTDERR: from /usr/include/QtCore/qprocess.h:45, BUILDSTDERR: from /usr/include/QtCore/QProcess:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/iostream:38, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp: In member function 'void Avogadro::GamessControlGroup::WriteToFile(std::ostream&, Avogadro::GamessInputData*, long int)': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:850:19: warning: '%s' directive writing up to 179 bytes into a region of size 174 [-Wformat-overflow=] BUILDSTDERR: sprintf( Out, "CITYP=%s ", textVal ); BUILDSTDERR: ^~~~~~~~~~~ ~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from /usr/include/c++/8/cstdio:42, BUILDSTDERR: from /usr/include/c++/8/ext/string_conversions.h:43, BUILDSTDERR: from /usr/include/c++/8/bits/basic_string.h:6391, BUILDSTDERR: from /usr/include/c++/8/string:52, BUILDSTDERR: from /usr/include/c++/8/bits/locale_classes.h:40, BUILDSTDERR: from /usr/include/c++/8/bits/ios_base.h:41, BUILDSTDERR: from /usr/include/c++/8/ios:42, BUILDSTDERR: from /usr/include/c++/8/ostream:38, BUILDSTDERR: from /usr/include/c++/8/iostream:39, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 8 and 187 bytes into a destination of size 180 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp: In member function 'QString Avogadro::OrcaAnalyseDialog::readOutputFile()': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:470:10: warning: variable 'virtualAtoms' set but not used [-Wunused-but-set-variable] BUILDSTDERR: bool virtualAtoms = false; BUILDSTDERR: ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 77%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/QtGlobal:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp: In function 'Eigen::Matrix Avogadro::QTAIMMathUtilities::minusThreeSignatureLocatorGradient(const Eigen::Matrix&, const Eigen::Matrix&)': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:184:25: warning: variable 'evec' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Matrix evec = eigenvectorsOfASymmetricFourByFourMatrix(A); BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp: In function 'Eigen::Matrix Avogadro::QTAIMMathUtilities::minusOneSignatureLocatorGradient(const Eigen::Matrix&, const Eigen::Matrix&)': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:224:25: warning: variable 'evec' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Matrix evec = eigenvectorsOfASymmetricThreeByThreeMatrix(A); BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp: In function 'Eigen::Matrix Avogadro::QTAIMMathUtilities::plusOneSignatureLocatorGradient(const Eigen::Matrix&, const Eigen::Matrix&)': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:264:25: warning: variable 'evec' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Matrix evec = eigenvectorsOfASymmetricThreeByThreeMatrix(A); BUILDSTDERR: ^~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp: In function 'Eigen::Matrix Avogadro::QTAIMMathUtilities::plusThreeSignatureLocatorGradient(const Eigen::Matrix&, const Eigen::Matrix&)': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:305:25: warning: variable 'evec' set but not used [-Wunused-but-set-variable] BUILDSTDERR: Matrix evec = eigenvectorsOfASymmetricFourByFourMatrix(A); BUILDSTDERR: ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtGui/qsyntaxhighlighter.h:45, BUILDSTDERR: from /usr/include/QtGui/QSyntaxHighlighter:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 78%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qalgorithms.h:45, BUILDSTDERR: from /usr/include/QtCore/qdebug.h:45, BUILDSTDERR: from /usr/include/QtCore/QDebug:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 78%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp:24: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qiodevice.h:46, BUILDSTDERR: from /usr/include/QtCore/qprocess.h:45, BUILDSTDERR: from /usr/include/QtCore/QProcess:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 79%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 79%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcaextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 78%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qalgorithms.h:45, BUILDSTDERR: from /usr/include/QtCore/qdebug.h:45, BUILDSTDERR: from /usr/include/QtCore/QDebug:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 80%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 79%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcainputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Linking CXX shared module ../../../../lib64/qtaimextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Built target qtaimextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Generating moc_distancecolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_distancecolor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= Scanning dependencies of target distancecolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtGui/qsyntaxhighlighter.h:45, BUILDSTDERR: from /usr/include/QtGui/QSyntaxHighlighter:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/distancecolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_distancecolor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_distancecolor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Linking CXX shared module ../../../lib64/distancecolor.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Built target distancecolor make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Generating moc_chargecolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_chargecolor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= Scanning dependencies of target chargecolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Linking CXX shared module ../../../../lib64/gamessextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Built target gamessextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/chargecolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcaspectra.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_chargecolor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_chargecolor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Linking CXX shared module ../../../lib64/chargecolor.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Built target chargecolor make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Generating moc_customcolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_customcolor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= Scanning dependencies of target customcolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Linking CXX shared module ../../../../lib64/orcaextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Built target orcaextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Generating moc_smartscolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_smartscolor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= Scanning dependencies of target smartscolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/customcolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_customcolor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_customcolor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 82%] Linking CXX shared module ../../../lib64/customcolor.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 82%] Built target customcolor make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 82%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_smartscolor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/../../../../libavogadro/src/colors/smartscolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_smartscolor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 82%] Generating moc_atomindexcolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= Scanning dependencies of target atomindexcolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 82%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/smartscolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Linking CXX shared module ../../../lib64/smartscolor.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Built target smartscolor make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Generating ui_residuecolorsettings.h cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/ui_residuecolorsettings.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/residuecolorsettings.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Generating moc_residuecolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_residuecolor.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= Scanning dependencies of target residuecolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_atomindexcolor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_atomindexcolor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Linking CXX shared module ../../../lib64/atomindexcolor.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Built target atomindexcolor make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Generating moleculelist.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python/moleculelist.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= Scanning dependencies of target python-module make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/residuecolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_residuecolor.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/moc_residuecolor.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Linking CXX shared module ../../../lib64/residuecolor.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/animation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculefiletest.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletest.dir/depend BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/animation.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Built target residuecolor make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculetest.dir/build.make libavogadro/tests/CMakeFiles/moleculetest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculefiletest.dir/DependInfo.cmake --color= Scanning dependencies of target moleculefiletest make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculefiletest.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculetest.dir/DependInfo.cmake --color= Scanning dependencies of target moleculetest make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculetest.dir/build.make libavogadro/tests/CMakeFiles/moleculetest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/atom.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/atom.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/tests/CMakeFiles/moleculetest.dir/moleculetest.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.2.0/testfiles/\" -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/moleculetest.dir/moleculetest.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculetest.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qabstracteventdispatcher.h:45, BUILDSTDERR: from /usr/include/QtCore/QtCore:3, BUILDSTDERR: from /usr/include/QtTest/QtTest:3, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculetest.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Linking CXX executable ../../bin/moleculetest cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/moleculetest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -rdynamic CMakeFiles/moleculetest.dir/moleculetest.cpp.o -o ../../bin/moleculetest -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -L/usr/usr/lib64 -Wl,-rpath,/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64 -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.2.0 -lQtCore make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Built target moleculetest make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/tests/CMakeFiles/moleculefiletest.dir/moleculefiletest.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.2.0/testfiles/\" -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/moleculefiletest.dir/moleculefiletest.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculefiletest.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qabstracteventdispatcher.h:45, BUILDSTDERR: from /usr/include/QtCore/QtCore:3, BUILDSTDERR: from /usr/include/QtTest/QtTest:3, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculefiletest.cpp:28: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Linking CXX executable ../../bin/moleculefiletest cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/moleculefiletest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -rdynamic CMakeFiles/moleculefiletest.dir/moleculefiletest.cpp.o -o ../../bin/moleculefiletest -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -L/usr/usr/lib64 -Wl,-rpath,/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64 -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.2.0 -lQtCore make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/bond.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/neighborlisttest.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttest.dir/depend BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/bond.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Built target moleculefiletest make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qiodevice.h:46, BUILDSTDERR: from /usr/include/QtCore/qprocess.h:45, BUILDSTDERR: from /usr/include/QtCore/QProcess:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/neighborlisttest.dir/DependInfo.cmake --color= Scanning dependencies of target neighborlisttest make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/neighborlisttest.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/tests/CMakeFiles/neighborlisttest.dir/neighborlisttest.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.2.0/testfiles/\" -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/neighborlisttest.dir/neighborlisttest.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/neighborlisttest.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qabstracteventdispatcher.h:45, BUILDSTDERR: from /usr/include/QtCore/QtCore:3, BUILDSTDERR: from /usr/include/QtTest/QtTest:3, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/neighborlisttest.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Linking CXX executable ../../bin/neighborlisttest cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/neighborlisttest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -rdynamic CMakeFiles/neighborlisttest.dir/neighborlisttest.cpp.o -o ../../bin/neighborlisttest -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -L/usr/usr/lib64 -Wl,-rpath,/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64 -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.2.0 -lQtCore make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Built target neighborlisttest make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/camera.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculebench.dir/build.make libavogadro/tests/CMakeFiles/moleculebench.dir/depend BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculebench.dir/DependInfo.cmake --color= Scanning dependencies of target moleculebench make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculebench.dir/build.make libavogadro/tests/CMakeFiles/moleculebench.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Building CXX object libavogadro/tests/CMakeFiles/moleculebench.dir/moleculebench.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.2.0/testfiles/\" -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/moleculebench.dir/moleculebench.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculebench.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qabstracteventdispatcher.h:45, BUILDSTDERR: from /usr/include/QtCore/QtCore:3, BUILDSTDERR: from /usr/include/QtTest/QtTest:3, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculebench.cpp:28: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Linking CXX executable ../../bin/moleculebench cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/moleculebench.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -rdynamic CMakeFiles/moleculebench.dir/moleculebench.cpp.o -o ../../bin/moleculebench -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -L/usr/usr/lib64 -Wl,-rpath,/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64 -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.2.0 -lQtCore make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Built target moleculebench make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qiodevice.h:46, BUILDSTDERR: from /usr/include/QtCore/qprocess.h:45, BUILDSTDERR: from /usr/include/QtCore/QProcess:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/drawcommandtest.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtest.dir/depend [ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/drawcommandtest.dir/DependInfo.cmake --color= Scanning dependencies of target drawcommandtest make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/drawcommandtest.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 84%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/color.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/color.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/color.cpp:3: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Generating avogadro_zh_TW.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/zh_TW.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_zh_TW.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_zh_TW.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_zh_TW.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_zh_TW.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Generating aboutdialog.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/aboutdialog.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Generating addenginedialog.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/addenginedialog.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Generating application.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/application.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Generating detachedview.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/detachedview.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Generating enginecolorswidget.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/enginecolorswidget.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Generating engineitemdelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/engineitemdelegate.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Generating engineitemmodel.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/engineitemmodel.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 86%] Generating enginelistview.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/enginelistview.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 86%] Generating engineprimitiveswidget.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/engineprimitiveswidget.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 86%] Generating engineviewwidget.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/engineviewwidget.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 86%] Generating flattabwidget.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/flattabwidget.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 86%] Generating glgraphicsview.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/glgraphicsview.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 86%] Generating importdialog.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/importdialog.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 86%] Generating mainwindow.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/mainwindow.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 86%] Generating pluginitemmodel.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/pluginitemmodel.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 86%] Generating pluginlistview.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/pluginlistview.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 86%] Generating pluginsettings.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/pluginsettings.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Generating primitiveitemmodel.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/primitiveitemmodel.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Generating primitivetreeview.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/primitivetreeview.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Generating projecttreeeditor.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/projecttreeeditor.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Generating projecttreemodel.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/projecttreemodel.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Generating projecttreemodeldelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/projecttreemodeldelegate.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Generating savedialog.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/savedialog.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Generating settingsdialog.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/settingsdialog.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Generating atomdelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/atomdelegate.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Generating bonddelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/bonddelegate.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Generating labeldelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/labeldelegate.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Generating moleculedelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/moleculedelegate.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Generating residuedelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/residuedelegate.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Generating selectiondelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/selectiondelegate.moc_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Generating ui_addenginedialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_addenginedialog.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/addenginedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Generating ui_enginecolorswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_enginecolorswidget.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginecolorswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Generating ui_engineprimitiveswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_engineprimitiveswidget.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Generating ui_importdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_importdialog.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Generating ui_mainwindow.h cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_mainwindow.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Generating ui_pluginsettings.h cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_pluginsettings.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginsettings.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 89%] Generating ui_projecttreeeditor.h cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_projecttreeeditor.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 89%] Generating ui_settingsdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_settingsdialog.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 89%] Generating qrc_avogadro.cxx cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/lib64/qt4/bin/rcc -name avogadro -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/qrc_avogadro.cxx /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/avogadro.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 89%] Generating avogadro_af.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/af.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_af.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_af.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_af.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_af.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 89%] Generating avogadro_ar.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ar.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ar.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ar.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ar.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ar.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 89%] Generating avogadro_bg.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/bg.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_bg.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_bg.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_bg.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_bg.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 89%] Generating avogadro_ca.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ca.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ca.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ca.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ca.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ca.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 89%] Generating avogadro_ca@valencia.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ca@valencia.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ca@valencia.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ca@valencia.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ca@valencia.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ca@valencia.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 89%] Generating avogadro_cs.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/cs.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_cs.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_cs.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_cs.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_cs.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 89%] Generating avogadro_da.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/da.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_da.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_da.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_da.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_da.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Generating avogadro_de.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/de.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_de.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_de.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_de.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_de.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Generating avogadro_el.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/el.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_el.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_el.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_el.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_el.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Generating avogadro_en_AU.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/en_AU.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_AU.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_AU.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_AU.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_AU.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Generating avogadro_en_CA.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/en_CA.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_CA.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_CA.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_CA.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_CA.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Generating avogadro_en_GB.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/en_GB.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_GB.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_GB.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_GB.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_en_GB.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Generating avogadro_es.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/es.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_es.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_es.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_es.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_es.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Generating avogadro_et.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/et.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_et.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_et.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_et.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_et.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Generating avogadro_eu.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/eu.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_eu.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_eu.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_eu.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_eu.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Generating avogadro_fi.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/fi.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fi.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fi.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fi.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Building CXX object libavogadro/tests/CMakeFiles/drawcommandtest.dir/drawcommandtest.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.2.0/testfiles/\" -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/drawcommandtest.dir/drawcommandtest.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/drawcommandtest.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qabstracteventdispatcher.h:45, BUILDSTDERR: from /usr/include/QtCore/QtCore:3, BUILDSTDERR: from /usr/include/QtTest/QtTest:3, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/drawcommandtest.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/drawcommandtest.cpp:33: BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/../src/tools/drawcommand.cpp: In constructor 'Avogadro::AddBondDrawCommandPrivate::AddBondDrawCommandPrivate()': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/../src/tools/drawcommand.cpp:533:53: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] BUILDSTDERR: postCommandEnd(0) {} BUILDSTDERR: ^ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/../src/tools/drawcommand.cpp:533:53: warning: conversion from 'long unsigned int' to 'unsigned int' changes value from '18446744073709551615' to '4294967295' [-Woverflow] make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Generating avogadro_fr.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/fr.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fr.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fr.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Generating avogadro_fr_CA.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/fr_CA.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fr_CA.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fr_CA.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fr_CA.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_fr_CA.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Generating avogadro_gl.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/gl.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_gl.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_gl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_gl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_gl.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Generating avogadro_he.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/he.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_he.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_he.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_he.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_he.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Generating avogadro_hi.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/hi.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hi.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hi.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hi.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Linking CXX executable ../../bin/drawcommandtest cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawcommandtest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -rdynamic CMakeFiles/drawcommandtest.dir/drawcommandtest.cpp.o -o ../../bin/drawcommandtest -L/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -L/usr/usr/lib64 -Wl,-rpath,/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64 -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.2.0 -lQtCore make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Built target drawcommandtest make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Generating avogadro_hr.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/hr.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hr.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hr.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Generating avogadro_hu.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/hu.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hu.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hu.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hu.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_hu.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Generating avogadro_id.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/id.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_id.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_id.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_id.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_id.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Generating avogadro_it.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/it.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_it.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_it.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_it.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_it.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Generating avogadro_ja.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ja.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ja.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ja.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ja.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ja.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Generating avogadro_kn.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/kn.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_kn.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_kn.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_kn.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_kn.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 92%] Generating avogadro_ko.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ko.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ko.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ko.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ko.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ko.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 92%] Generating avogadro_ms.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ms.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ms.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ms.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ms.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ms.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 92%] Generating avogadro_nb.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/nb.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_nb.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_nb.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_nb.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_nb.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 92%] Generating avogadro_nl.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/nl.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_nl.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_nl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_nl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_nl.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 92%] Generating avogadro_oc.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/oc.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_oc.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_oc.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_oc.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_oc.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 92%] Generating avogadro_pl.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/pl.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pl.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pl.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 92%] Generating avogadro_pt.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/pt.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pt.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pt.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pt.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pt.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 92%] Generating avogadro_pt_BR.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/pt_BR.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pt_BR.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pt_BR.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pt_BR.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_pt_BR.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 92%] Generating avogadro_ru.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ru.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ru.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ru.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ru.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ru.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 93%] Generating avogadro_sk.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/sk.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sk.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sk.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sk.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sk.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 93%] Generating avogadro_sl.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/sl.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sl.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sl.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 93%] Generating avogadro_sq.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/sq.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sq.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sq.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sq.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sq.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 93%] Generating avogadro_sr.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/sr.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sr.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sr.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 93%] Generating avogadro_sv.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/sv.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sv.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sv.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sv.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_sv.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 93%] Generating avogadro_ta.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ta.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ta.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ta.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ta.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ta.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 93%] Generating avogadro_te.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/te.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_te.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_te.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_te.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_te.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 93%] Generating avogadro_th.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/th.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_th.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_th.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_th.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_th.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 93%] Generating avogadro_tr.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/tr.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_tr.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_tr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_tr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_tr.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 93%] Generating avogadro_ug.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ug.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ug.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ug.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ug.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_ug.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Generating avogadro_uk.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/uk.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_uk.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_uk.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_uk.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_uk.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/glwidget.h:32, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Generating avogadro_vi.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/vi.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_vi.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_vi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_vi.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_vi.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Generating avogadro_zh_CN.qm cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/zh_CN.po -o /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_zh_CN.ts cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_zh_CN.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_zh_CN.ts -qm /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/avogadro_zh_CN.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro-app make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 92%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 85%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/cube.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/cube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/cube.cpp:3: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/aboutdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qdialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/aboutdialog.h:23, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/aboutdialog.cpp:19: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/addenginedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_addenginedialog.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/addenginedialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/addenginedialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/primitive.h:31, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/molecule.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qcoreapplication.h:45, BUILDSTDERR: from /usr/include/QtGui/qapplication.h:45, BUILDSTDERR: from /usr/include/QtGui/QApplication:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/detachedview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/QWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/detachedview.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/detachedview.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Linking CXX shared module ../../../../lib64/inputfileextension.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Built target inputfileextension make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/editcommands.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from 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Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:4: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821, BUILDSTDERR: from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, BUILDSTDERR: from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:5: BUILDSTDERR: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] BUILDSTDERR: #warning "Using deprecated NumPy API, disable it by " \ BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_enginecolorswidget.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginecolorswidget.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/engine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/engine.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtGui/qabstractitemdelegate.h:45, BUILDSTDERR: from /usr/include/QtGui/qstyleditemdelegate.h:45, BUILDSTDERR: from /usr/include/QtGui/QStyledItemDelegate:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemdelegate.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/extension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/extension.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/fragment.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/fragment.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/fragment.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/qabstractitemmodel.h:45, BUILDSTDERR: from /usr/include/QtCore/QModelIndex:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemmodel.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginelistview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qframe.h:45, BUILDSTDERR: from /usr/include/QtGui/qabstractscrollarea.h:45, BUILDSTDERR: from /usr/include/QtGui/qabstractitemview.h:45, BUILDSTDERR: from /usr/include/QtGui/qlistview.h:45, BUILDSTDERR: from /usr/include/QtGui/QListView:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginelistview.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginelistview.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_engineprimitiveswidget.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/main.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/python2.7/Python.h:19, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/main.cpp:1: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/QWidget:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineviewwidget.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/flattabwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/QObject:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/flattabwidget.h:26, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/flattabwidget.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/mesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/mesh.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qmetatype.h:45, BUILDSTDERR: from /usr/include/QtGui/qgraphicsview.h:45, BUILDSTDERR: from /usr/include/QtGui/QGraphicsView:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/glgraphicsview.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_importdialog.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp: In function 'void export_GLWidget()': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:53:55: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BUILDSTDERR: class_ >("GLWidget") BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/8/memory:80, BUILDSTDERR: from /usr/include/boost/function/function_base.hpp:16, BUILDSTDERR: from /usr/include/boost/function/detail/prologue.hpp:17, BUILDSTDERR: from /usr/include/boost/function/function_template.hpp:13, BUILDSTDERR: from /usr/include/boost/function/detail/maybe_include.hpp:15, BUILDSTDERR: from /usr/include/boost/function/function0.hpp:11, BUILDSTDERR: from /usr/include/boost/python/errors.hpp:13, BUILDSTDERR: from /usr/include/boost/python/handle.hpp:11, BUILDSTDERR: from /usr/include/boost/python/args_fwd.hpp:10, BUILDSTDERR: from /usr/include/boost/python/args.hpp:10, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: BUILDSTDERR: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here BUILDSTDERR: template class auto_ptr; BUILDSTDERR: ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/main.cpp:27: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculefile.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/moleculefile.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp:3: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/python2.7/Python.h:19, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp:1: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/pluginmanager.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginitemmodel.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp: In function 'void export_Molecule()': BUILDSTDERR: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:88:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BUILDSTDERR: std::auto_ptr >("Molecule", no_init) BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/8/memory:80, BUILDSTDERR: from /usr/include/boost/function/function_base.hpp:16, BUILDSTDERR: from /usr/include/boost/function/detail/prologue.hpp:17, BUILDSTDERR: from /usr/include/boost/function/function_template.hpp:13, BUILDSTDERR: from /usr/include/boost/function/detail/maybe_include.hpp:15, BUILDSTDERR: from /usr/include/boost/function/function0.hpp:11, BUILDSTDERR: from /usr/include/boost/python/errors.hpp:13, BUILDSTDERR: from /usr/include/boost/python/handle.hpp:11, BUILDSTDERR: from /usr/include/boost/python/args_fwd.hpp:10, BUILDSTDERR: from /usr/include/boost/python/args.hpp:10, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: BUILDSTDERR: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here BUILDSTDERR: template class auto_ptr; BUILDSTDERR: ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginlistview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/pluginmanager.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginlistview.cpp:23: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/navigate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/navigate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/navigate.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginsettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/pluginmanager.h:30, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginsettings.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginsettings.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/neighborlist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/neighborlist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwindowdefs.h:45, BUILDSTDERR: from /usr/include/QtGui/qwidget.h:46, BUILDSTDERR: from /usr/include/QtGui/qframe.h:45, BUILDSTDERR: from /usr/include/QtGui/qabstractscrollarea.h:45, BUILDSTDERR: from /usr/include/QtGui/qabstractitemview.h:45, BUILDSTDERR: from /usr/include/QtGui/qtreeview.h:45, BUILDSTDERR: from /usr/include/QtGui/QTreeView:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitivetreeview.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painterdevice.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/painterdevice.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/painter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painter.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/plugin.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/extension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/dockextension.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.cpp:24: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/qabstractitemmodel.h:45, BUILDSTDERR: from /usr/include/QtCore/QAbstractItemModel:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitiveitemmodel.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/periodictableview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/periodictableview.cpp:3: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.h:47, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp:26: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/plugin.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/plugin.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/plugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/plugin.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qchar.h:45, BUILDSTDERR: from /usr/include/QtCore/qstring.h:45, BUILDSTDERR: from /usr/include/QtCore/qdir.h:45, BUILDSTDERR: from /usr/include/QtGui/qfiledialog.h:45, BUILDSTDERR: from /usr/include/QtGui/QFileDialog:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitive.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/primitive.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/primitive.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/primitive.cpp:3: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/pluginmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/pluginmanager.cpp:3: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitivelist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/primitivelist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/primitivelist.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/primitivelist.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qatomic.h:45, BUILDSTDERR: from /usr/include/QtCore/qvariant.h:45, BUILDSTDERR: from /usr/include/QtCore/QVariant:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/ui_settingsdialog.h:12, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.h:28, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:25: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qstring.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/qstring.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/qstring.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/python2.7/Python.h:19, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/qstring.cpp:1: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qlist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/qlist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/qlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/qlist.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/residue.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/residue.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/residue.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/residue.cpp:2: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/qrc_avogadro.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/qrc_avogadro.cxx:9: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/c++/8/riscv64-redhat-linux/bits/os_defines.h:39, BUILDSTDERR: from /usr/include/c++/8/riscv64-redhat-linux/bits/c++config.h:508, BUILDSTDERR: from /usr/include/c++/8/utility:68, BUILDSTDERR: from /usr/include/c++/8/algorithm:60, BUILDSTDERR: from /usr/include/QtCore/qglobal.h:68, BUILDSTDERR: from /usr/include/QtCore/qnamespace.h:45, BUILDSTDERR: from /usr/include/QtCore/qobjectdefs.h:45, BUILDSTDERR: from /usr/include/QtCore/qobject.h:47, BUILDSTDERR: from /usr/include/QtCore/qtranslator.h:45, BUILDSTDERR: from /usr/include/QtCore/QTranslator:1, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include/avogadro/global.h:29, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.h:25, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp:22: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/sip.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/sip.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/sip.cpp:1: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/std_vector.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/std_vector.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/std_vector.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/std_vector.cpp:3: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/swig.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/swig.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/swig.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/swig.cpp:1: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/tool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/tool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/tool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/boost/python/detail/wrap_python.hpp:61, BUILDSTDERR: from /usr/include/boost/python/detail/prefix.hpp:13, BUILDSTDERR: from /usr/include/boost/python/args.hpp:8, BUILDSTDERR: from /usr/include/boost/python.hpp:11, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/tool.cpp:3: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Linking CXX executable ../../bin/avogadro cd /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro-app.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings 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CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: -lQtOpenGL -lQtGui -lQtTest -lQtNetwork -lQtCore -lopenbabel ../../lib64/libavogadro.so.1.2.0 -lX11 -lboost_python make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Built target avogadro-app make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/toolgroup.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/toolgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' BUILDSTDERR: In file included from /usr/include/bits/libc-header-start.h:33, BUILDSTDERR: from /usr/include/limits.h:26, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:194, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/syslimits.h:7, BUILDSTDERR: from /usr/lib/gcc/riscv64-redhat-linux/8/include/limits.h:34, BUILDSTDERR: from /usr/include/python2.7/Python.h:19, BUILDSTDERR: from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/toolgroup.cpp:1: BUILDSTDERR: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Linking CXX shared module ../../../lib64/Avogadro.so cd /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/python-module.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/Avogadro.so CMakeFiles/python-module.dir/animation.cpp.o CMakeFiles/python-module.dir/atom.cpp.o CMakeFiles/python-module.dir/bond.cpp.o CMakeFiles/python-module.dir/camera.cpp.o CMakeFiles/python-module.dir/color.cpp.o CMakeFiles/python-module.dir/cube.cpp.o CMakeFiles/python-module.dir/eigen.cpp.o CMakeFiles/python-module.dir/elementtranslator.cpp.o CMakeFiles/python-module.dir/engine.cpp.o CMakeFiles/python-module.dir/extension.cpp.o CMakeFiles/python-module.dir/fragment.cpp.o CMakeFiles/python-module.dir/glwidget.cpp.o CMakeFiles/python-module.dir/main.cpp.o CMakeFiles/python-module.dir/mesh.cpp.o CMakeFiles/python-module.dir/meshgenerator.cpp.o CMakeFiles/python-module.dir/molecule.cpp.o CMakeFiles/python-module.dir/moleculefile.cpp.o CMakeFiles/python-module.dir/moleculelist.cpp.o CMakeFiles/python-module.dir/navigate.cpp.o CMakeFiles/python-module.dir/neighborlist.cpp.o CMakeFiles/python-module.dir/painter.cpp.o CMakeFiles/python-module.dir/painterdevice.cpp.o CMakeFiles/python-module.dir/periodictableview.cpp.o CMakeFiles/python-module.dir/plugin.cpp.o CMakeFiles/python-module.dir/pluginmanager.cpp.o CMakeFiles/python-module.dir/primitive.cpp.o CMakeFiles/python-module.dir/primitivelist.cpp.o CMakeFiles/python-module.dir/qlist.cpp.o CMakeFiles/python-module.dir/qstring.cpp.o CMakeFiles/python-module.dir/residue.cpp.o CMakeFiles/python-module.dir/sip.cpp.o CMakeFiles/python-module.dir/std_vector.cpp.o CMakeFiles/python-module.dir/swig.cpp.o CMakeFiles/python-module.dir/tool.cpp.o CMakeFiles/python-module.dir/toolgroup.cpp.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/build/lib64: -lstdc++ ../../../lib64/libavogadro.so.1.2.0 -lQtOpenGL -lQtGui -lQtTest -lQtCore -lpython2.7 -lopenbabel -lboost_python make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Built target python-module make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' make: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro-1.2.0/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.6DGuPg + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64 + cd avogadro-1.2.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/cmake -H/builddir/build/BUILD/avogadro-1.2.0 -B/builddir/build/BUILD/avogadro-1.2.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro-1.2.0/build/CMakeFiles /builddir/build/BUILD/avogadro-1.2.0/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/elementcolor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Built target elementcolor /usr/bin/make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 1%] Built target bsdyengine /usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/navigatetool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 2%] Built target navigatetool /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/CMakeFiles/avogadro.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 20%] Built target avogadro /usr/bin/make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 21%] Built target qtaimengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/forceengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 22%] Built target forceengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 23%] Built target ribbonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/hbondengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 24%] Built target hbondengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/wireengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 25%] Built target wireengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/stickengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 26%] Built target stickengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 27%] Built target cartoonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/labelengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 28%] Built target labelengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ringengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 28%] Built target ringengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/polygonengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 28%] Built target polygonengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/sphereengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 29%] Built target sphereengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 30%] Built target surfaceengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/axesengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 31%] Built target axesengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 32%] Built target dipoleengine /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 32%] Built target simplewireengine /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 32%] Built target selectrotatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 33%] Built target autorotatetool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 34%] Built target clickmeasuretool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Built target bondcentrictool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autoopttool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 35%] Built target autoopttool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/drawtool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 36%] Built target drawtool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/aligntool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 36%] Built target aligntool /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 37%] Built target manipulatetool /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Built target gl2psextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 38%] Built target supercellextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Built target shaderextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Built target fileimportextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Built target h2methylextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 39%] Built target molecularpropextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/propextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Built target propextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 40%] Built target invertchiralextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 41%] Built target cartesianextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 42%] Built target pythonterminal /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 43%] Built target forcefieldextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/selectextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 44%] Built target selectextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 45%] Built target insertpeptideextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 45%] Built target hydrogensextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 46%] Built target insertdnaextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 47%] Built target networkfetchextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/animationextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 48%] Built target animationextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 49%] Built target povrayextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 50%] Built target insertfragmentextension /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 51%] Built target vrmlextension /usr/bin/make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 53%] Built target msym /usr/bin/make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 53%] Built target symmetryextension /usr/bin/make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 54%] Built target spglib /usr/bin/make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 58%] Built target crystallographyextension /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 62%] Built target spectraextension /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 63%] Built target vibrationextension /usr/bin/make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 65%] Built target OpenQube /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 67%] Built target orbitalextension /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Built target surfaceextension /usr/bin/make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 68%] Built target qube /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 69%] Built target tubegen /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 71%] Built target swcntbuilderextension /usr/bin/make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 72%] Built target qtaimextension /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 74%] Built target gamessextension /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 79%] Built target inputfileextension /usr/bin/make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Built target orcaextension /usr/bin/make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/distancecolor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Built target distancecolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/chargecolor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Built target chargecolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/customcolor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 81%] Built target customcolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/smartscolor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 82%] Built target smartscolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Built target atomindexcolor /usr/bin/make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/residuecolor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 83%] Built target residuecolor /usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/src/python/CMakeFiles/python-module.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Built target python-module /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Built target moleculefiletestmoc /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculefiletest.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculefiletest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculefiletest.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/moleculefiletest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Built target moleculefiletest /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculetestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculetestmoc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Built target moleculetestmoc /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculetest.dir/build.make libavogadro/tests/CMakeFiles/moleculetest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculetest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculetest.dir/build.make libavogadro/tests/CMakeFiles/moleculetest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/moleculetest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Built target moleculetest /usr/bin/make -f libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Built target neighborlisttestmoc /usr/bin/make -f libavogadro/tests/CMakeFiles/neighborlisttest.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/neighborlisttest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/neighborlisttest.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/neighborlisttest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 87%] Built target neighborlisttest /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Built target moleculebenchmoc /usr/bin/make -f libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Built target drawcommandtestmoc /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculebench.dir/build.make libavogadro/tests/CMakeFiles/moleculebench.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/moleculebench.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/moleculebench.dir/build.make libavogadro/tests/CMakeFiles/moleculebench.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/moleculebench.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Built target moleculebench /usr/bin/make -f libavogadro/tests/CMakeFiles/drawcommandtest.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/build/libavogadro/tests/CMakeFiles/drawcommandtest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f libavogadro/tests/CMakeFiles/drawcommandtest.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/drawcommandtest.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [ 88%] Built target drawcommandtest /usr/bin/make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' cd /builddir/build/BUILD/avogadro-1.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src /builddir/build/BUILD/avogadro-1.2.0/build /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src /builddir/build/BUILD/avogadro-1.2.0/build/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[2]: Nothing to be done for 'avogadro/src/CMakeFiles/avogadro-app.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' [100%] Built target avogadro-app make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro-1.2.0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/AvogadroConfig.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/AvogadroConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/AvogadroUse.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/cmake/FindEigen3.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/cmake/FindGLEW.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/carbamides -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/carbamides/urea.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/oleic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/arachidonic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/octanoic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/linolenic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/decanoic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/myristic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/cervonic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/pentanoic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/stearic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/palmitic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/lauric_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/hexanoic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fatty_acids/linoleic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cycloheptane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/norbornane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/adamantane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-chair.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cis-decahydronaphthalene.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cyclobutane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cyclodecane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphene.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphor.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cyclononane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cyclopropane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/trans-decahydronaphthalene.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-twist-boat.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cyclopentane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/abietic_acid.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cyclooctane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/cyclic_alkanes/cubane.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/aldehydes -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/aldehydes/acetaldehyde.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/aldehydes/formaldehyde.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/ligands -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/ligands/Cp-cyclopentadienyl.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C28.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C76.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C32.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C240.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C180.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/PCBM.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C50.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C30.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/PC70BM.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C60-buckminsterfullerene.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C80.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C36.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C24.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/fragments/fullerenes/C78.cml -- Installing: 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/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/include/avogadro/pythoninterpreter.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/include/avogadro/pythonscript.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/include/avogadro/pythonerror.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libavogadro.so.1.2.0 -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libavogadro.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libavogadro.so.1.2.0" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libavogadro.so -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/libavogadro_ar.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/libavogadro_bg.qm -- Installing: 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/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/libavogadro_uk.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/libavogadro_vi.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/libavogadro_zh_CN.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/libavogadro_zh_TW.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/AvogadroTargets.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/AvogadroTargets-release.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/labelengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/labelengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/wireengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/wireengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/hbondengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/hbondengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/forceengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/forceengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/sphereengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/sphereengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/stickengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/stickengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/ribbonengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/ribbonengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/cartoonengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/cartoonengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/ringengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/ringengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/polygonengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/polygonengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/surfaceengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/surfaceengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/axesengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/axesengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/dipoleengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/dipoleengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/simplewireengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/simplewireengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/qtaimengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/engines/qtaimengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/engineScripts/wireframe.py -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/drawtool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/drawtool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/bondcentrictool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/bondcentrictool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/clickmeasuretool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/clickmeasuretool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/selectrotatetool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/selectrotatetool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/autoopttool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/autoopttool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/manipulatetool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/manipulatetool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/autorotatetool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/autorotatetool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/aligntool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/tools/aligntool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/propextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/propextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/cartesianextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/cartesianextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/molecularpropextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/molecularpropextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/forcefieldextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/forcefieldextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/hydrogensextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/hydrogensextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/invertchiralextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/invertchiralextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/selectextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/selectextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertfragmentextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertfragmentextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertpeptideextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertpeptideextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertdnaextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertdnaextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/h2methylextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/h2methylextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/pythonterminal.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/pythonterminal.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/extensionScripts/example.py -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/animationextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/animationextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/povrayextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/povrayextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/vrmlextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/vrmlextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/fileimportextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/fileimportextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/shaderextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/shaderextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/clip.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/gooch.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/light.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/marble.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/per-pixel-lighting.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/per_pixel2.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/phong-use-diffuse.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/phong.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/plasma.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/x-ray-cryos.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/x-ray.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/clip.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/gooch.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/light.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/marble.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/per-pixel-lighting.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/per_pixel2.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/phong-use-diffuse.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/phong.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/plasma.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/x-ray-cryos.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/x-ray.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/phong.params -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/x-ray-cryos.params -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/libavogadro/shaders/x-ray.params -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/supercellextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/supercellextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/networkfetchextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/networkfetchextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/gl2psextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/gl2psextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/symmetryextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/symmetryextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libmsym/cmake/libmsymConfig.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libmsym/cmake/libmsymConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/libmsym.so -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/include/libmsym/msym.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/include/libmsym/msym_error.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libmsym/cmake/libmsymTargets.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libmsym/cmake/libmsymTargets-release.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/crystallographyextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/crystallographyextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/vibrationextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/vibrationextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/spectraextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/spectraextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/surfaceextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/surfaceextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/orbitalextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/orbitalextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/bin/qube -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/bin/qube" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libavogadro_OpenQube.so.0.1.0 -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libavogadro_OpenQube.so.0 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libavogadro_OpenQube.so.0.1.0" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libavogadro_OpenQube.so -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/swcntbuilderextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/swcntbuilderextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/qtaimextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/qtaimextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/inputfileextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/inputfileextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/gamessextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/gamessextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/orcaextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/orcaextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/residuecolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/residuecolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/atomindexcolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/atomindexcolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/chargecolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/chargecolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/distancecolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/distancecolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/customcolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/customcolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/smartscolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/colors/smartscolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/python2.7/site-packages/Avogadro.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/python2.7/site-packages/Avogadro.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/bin/avogadro -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/bin/avogadro" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_af.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_ar.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_bg.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_ca.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_ca@valencia.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_cs.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_da.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_de.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_el.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_en_AU.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_en_CA.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_en_GB.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_es.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_et.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_eu.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_fi.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_fr.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_fr_CA.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_gl.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_he.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_hi.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_hr.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_hu.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_id.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_it.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_ja.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_kn.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_ko.qm -- Installing: 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Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_uk.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_vi.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_zh_CN.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/avogadro/i18n/avogadro_zh_TW.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/applications/avogadro.desktop -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/pixmaps/avogadro-icon.png -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/man/man1/avogadro.1 -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/man/man1/avopkg.1 make: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/build' + install -pm 644 -D /builddir/build/SOURCES/avogadro.appdata.xml /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/metainfo/avogadro.appdata.xml + appstream-util validate-relax --nonet /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/metainfo/avogadro.appdata.xml BUILDSTDERR: /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/metainfo/avogadro.appdata.xml: GLib-GIO-Message: 01:39:40.069: Using the 'memory' GSettings backend. Your settings will not be saved or shared with other applications. OK + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64 libavogadro --with-qt --without-mo + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64 avogadro --with-qt --without-mo + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.2.0-18.fc29 --unique-debug-suffix -1.2.0-18.fc29.riscv64 --unique-debug-src-base avogadro-1.2.0-18.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/avogadro-1.2.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/bin/qube explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/libavogadro.so.1.2.0 explicitly decompress any DWARF compressed ELF sections in 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/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/hydrogensextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/hydrogensextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/forcefieldextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/forcefieldextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/molecularpropextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/molecularpropextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/orcaextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/orcaextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/inputfileextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/inputfileextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/pythonterminal.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/pythonterminal.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertpeptideextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertpeptideextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/swcntbuilderextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/swcntbuilderextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/cartesianextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/cartesianextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/fileimportextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/fileimportextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/crystallographyextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/crystallographyextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertfragmentextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertfragmentextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/qtaimextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/qtaimextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/gamessextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/gamessextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/spectraextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/spectraextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/symmetryextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/symmetryextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/networkfetchextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/networkfetchextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertdnaextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/insertdnaextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/gl2psextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/gl2psextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/shaderextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/shaderextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/vibrationextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/vibrationextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/h2methylextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/h2methylextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/propextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/propextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/surfaceextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/surfaceextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/animationextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/animationextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/vrmlextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/vrmlextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/libmsym.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/libmsym.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/povrayextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/povrayextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/orbitalextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/orbitalextension.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/supercellextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/avogadro/extensions/supercellextension.so /usr/lib/rpm/sepdebugcrcfix: Updated 66 CRC32s, 0 CRC32s did match. BUILDSTDERR: 17420 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/lib64/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/avopkg from /bin/sh to #!/usr/bin/sh Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.4cFqtm Processing files: avogadro-1.2.0-18.fc29.riscv64 Provides: application() application(avogadro.desktop) avogadro = 1.2.0-18.fc29 avogadro(riscv-64) = 1.2.0-18.fc29 metainfo() metainfo(avogadro.appdata.xml) mimehandler(chemical/x-cif) mimehandler(chemical/x-cml) mimehandler(chemical/x-daylight-smiles) mimehandler(chemical/x-gamess-input) mimehandler(chemical/x-gamess-output) mimehandler(chemical/x-gaussian-checkpoint) mimehandler(chemical/x-gaussian-cube) mimehandler(chemical/x-gaussian-log) mimehandler(chemical/x-mopac-out) mimehandler(chemical/x-pdb) mimehandler(chemical/x-qchem-output) mimehandler(chemical/x-xyz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libQtCore.so.4()(64bit) libQtGui.so.4()(64bit) libQtOpenGL.so.4()(64bit) libX11.so.6()(64bit) libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libopenbabel.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: avogadro-libs-1.2.0-18.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Mc2SrN + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.2.0 + DOCDIR=/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/doc/avogadro-libs + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/doc/avogadro-libs + cp -pr AUTHORS /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/doc/avogadro-libs + cp -pr README /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/doc/avogadro-libs + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.2vSLah + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.2.0 + LICENSEDIR=/builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/licenses/avogadro-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/licenses/avogadro-libs + cp -pr COPYING /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64/usr/share/licenses/avogadro-libs + exit 0 Provides: avogadro-libs = 1.2.0-18.fc29 avogadro-libs(riscv-64) = 1.2.0-18.fc29 libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) libmsym.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libGL.so.1()(64bit) libGLEW.so.2.0()(64bit) libGLU.so.1()(64bit) libQtCore.so.4()(64bit) libQtGui.so.4()(64bit) libQtNetwork.so.4()(64bit) libQtOpenGL.so.4()(64bit) libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) libboost_python.so.1.66.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libmsym.so()(64bit) libopenbabel.so.5()(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) python(abi) = 2.7 rtld(GNU_HASH) Processing files: avogadro-devel-1.2.0-18.fc29.riscv64 Provides: avogadro-devel = 1.2.0-18.fc29 avogadro-devel(riscv-64) = 1.2.0-18.fc29 pkgconfig(avogadro) = 1.2.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) pkgconfig(eigen3) Processing files: avogadro-i18n-1.2.0-18.fc29.noarch Provides: avogadro-i18n = 1.2.0-18.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro-debugsource-1.2.0-18.fc29.riscv64 Provides: avogadro-debugsource = 1.2.0-18.fc29 avogadro-debugsource(riscv-64) = 1.2.0-18.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro-debuginfo-1.2.0-18.fc29.riscv64 Provides: avogadro-debuginfo = 1.2.0-18.fc29 avogadro-debuginfo(riscv-64) = 1.2.0-18.fc29 debuginfo(build-id) = c3a58ed3b0936d92f48e274deb8b2278aaab09f8 debuginfo(build-id) = d91258ffaa6af2f13446b4c2377217017cbb74b4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: avogadro-debugsource(riscv-64) = 1.2.0-18.fc29 Processing files: avogadro-libs-debuginfo-1.2.0-18.fc29.riscv64 Provides: avogadro-libs-debuginfo = 1.2.0-18.fc29 avogadro-libs-debuginfo(riscv-64) = 1.2.0-18.fc29 debuginfo(build-id) = 06ba03763262a436158192c9bb00277e281043a9 debuginfo(build-id) = 0915818b1dd64f475eac11ea003f243109d4b6cc debuginfo(build-id) = 0a81eaea463cb04cdcac536d998872cc4831d5ff debuginfo(build-id) = 1c42b4092798f5bd622120ca71e571e234abf641 debuginfo(build-id) = 2079fb639bc8de8fc16d2f723b8e54ab21f239cb debuginfo(build-id) = 24c25bbbe2b50074c148da2cf090d57c631923e9 debuginfo(build-id) = 258ddc4a2a0c151729d08e9d37b05e28f6ce3d20 debuginfo(build-id) = 2bc0d5c5af9eee8426dc97085d002063b33e39cc debuginfo(build-id) = 2cb4f8764b0defa52db65f558f19a16a23b240df debuginfo(build-id) = 344b33e01bc944f3be171b011fe9b640030f679c debuginfo(build-id) = 35455d88d290d804b16d0a10223082928d13a497 debuginfo(build-id) = 3a6d4e87de331133642349f6567c82ab31d98cc9 debuginfo(build-id) = 3bd742be0dbf8031737fb9ba09487c9a99968545 debuginfo(build-id) = 43dcc411c6037467cb1b10beea61feab30024177 debuginfo(build-id) = 4455227f7a82794418a801d766bc18801c3e7884 debuginfo(build-id) = 49e535ee2a3b1b86c286b62c45e32f23915b241a debuginfo(build-id) = 50f59d7d83baa3ec0e58463cbdafa662d478056d debuginfo(build-id) = 5385294436c3cf15f3a1d92648940adb864cb1fd debuginfo(build-id) = 54d5f4c993c8d0e2cd1cb599abbe7bc1aafffd83 debuginfo(build-id) = 57b20f69543967d22b5673df63928abb717db225 debuginfo(build-id) = 5d8ac1cff6a13cd64e749af7d7fb2af77310dfd2 debuginfo(build-id) = 5f67dd7c7c69a98b883bee5fa6f20c60b2d4cc2e debuginfo(build-id) = 6659cba545dc469f4763f5d49171ab8b26c5d0d1 debuginfo(build-id) = 6870fece7e45d5b5a1b7dced2a3acb3161ea9634 debuginfo(build-id) = 6d9bf5207fb25d9f4b0fd5c0313644d30c16c1e5 debuginfo(build-id) = 6dac63777af5bedce593bb3c7fe27c8738d107cb debuginfo(build-id) = 7007419592958a192367e9663d9a847d4a5db797 debuginfo(build-id) = 75393a010681c0419b3af71a629cc68535badd22 debuginfo(build-id) = 795edb9928c0985f72861893d103e417d1fcaa7e debuginfo(build-id) = 79ed6367f02618022564034f4f8bdb243d636881 debuginfo(build-id) = 7a02ec1f3788b29778f3bed70732d6620428aea3 debuginfo(build-id) = 7a3dd64a44c3377dd5ed3cf0ac989b810d86c56e debuginfo(build-id) = 7af19ca191db2ec8ea17596e35e19ab79ed5b734 debuginfo(build-id) = 82def8931c71ce91e2b5f88bee730ddf8ed3bf5e debuginfo(build-id) = 8c44351059c2455bbc19583d56f408bc98999937 debuginfo(build-id) = 8d8aa316de449f02881261e6e4ffb2494fc126f7 debuginfo(build-id) = 8dab965da83925ca4635e4bfb3b792eb985f8190 debuginfo(build-id) = 959ad4bb4e01d4ae2766a4d5cc1179adcad236e4 debuginfo(build-id) = 977ebfd9af03bb57a8412c6d7a13f764c30046b3 debuginfo(build-id) = 9c339eff9e8a941efaf7cb172ce12c205affc841 debuginfo(build-id) = 9e1d7ce2293ebbc7c3e7b97e2eded19c2b4d51f9 debuginfo(build-id) = a2b70892e1c890f9230c992cdad796a109a6633c debuginfo(build-id) = aa01786c004e45dd82e38a054ab1a8d0d1392234 debuginfo(build-id) = aa822773bb61330bf7bf734f8d478a9516a36143 debuginfo(build-id) = aadd16c7d02dd40750e0354424ba2533c6e98e84 debuginfo(build-id) = adda884eadb71651dc374ce9337b159a24e97b4b debuginfo(build-id) = b08cafcbda2f9ff0f01c3a76c0701b126100cff8 debuginfo(build-id) = b3d861a74734cfb47360a15cca39847a0e5b6cf3 debuginfo(build-id) = b4954cafaad5ab7e853b58092607751066ca7dfc debuginfo(build-id) = b81b54cc6b6cc0b8e06fd680467201d110787fa8 debuginfo(build-id) = b81bb70799374816902be8aaf4a0909699e9c58c debuginfo(build-id) = c4ea74fd0cc7a3c5c24f5170f4046f673425c6ff debuginfo(build-id) = c5e42abdd2688213b4a484078cd66af0f31d913f debuginfo(build-id) = c927d759c7d37dcfe97c610f9fc31d7f38ffe9e7 debuginfo(build-id) = c969a0aa7cd2b5c583fcf39357007a3a1b86c5b1 debuginfo(build-id) = ce73436534bc78318ee42170f0d7266a239576b5 debuginfo(build-id) = e07156dd0c2039eedbd75cfa52a20c322ed8d8ee debuginfo(build-id) = e19e00c5e218488b2a6ff7a4f5a0de5a86e7a1c5 debuginfo(build-id) = ec4cce9b25326bec0a36ecfe23612c1d0d4ce0f3 debuginfo(build-id) = ed776e1ddeac0a7fd3b5435bb06a5fa8379632ca debuginfo(build-id) = ee59c6eab75d485a39514c74667f681a70798632 debuginfo(build-id) = f330e2988041969e137685191ebecb40cef4ea52 debuginfo(build-id) = fc5034c032ba686a505556a6c48104ce5f925503 debuginfo(build-id) = fe4d69a563127723ff61dda736a2d9c0700790ac Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: avogadro-debugsource(riscv-64) = 1.2.0-18.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64 Wrote: /builddir/build/RPMS/avogadro-1.2.0-18.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/avogadro-libs-1.2.0-18.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/avogadro-devel-1.2.0-18.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/avogadro-i18n-1.2.0-18.fc29.noarch.rpm Wrote: /builddir/build/RPMS/avogadro-debugsource-1.2.0-18.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/avogadro-debuginfo-1.2.0-18.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/avogadro-libs-debuginfo-1.2.0-18.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.w9WqBr + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.2.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/avogadro-1.2.0-18.fc29.riscv64 + exit 0 Child return code was: 0