Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/pymol.spec'], chrootPath='/var/lib/mock/f29-build-3855-962/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/pymol.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn - 1.5.0.2-3.20120218svn3982 BUILDSTDERR: warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn - 1.2-5.20090709svn3827 Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/pymol-1.9.0-1.20180224svn4178.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/pymol.spec'], chrootPath='/var/lib/mock/f29-build-3855-962/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/pymol.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: sh: /usr/bin/python: No such file or directory BUILDSTDERR: warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn - 1.5.0.2-3.20120218svn3982 BUILDSTDERR: warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn - 1.2-5.20090709svn3827 Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.vOO9ZX + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pymol-1.9.0 + /usr/bin/xz -dc /builddir/build/SOURCES/pymol-1.9.0-20180224svn4178.tar.xz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd pymol-1.9.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (pymol-setup.py.patch):' Patch #0 (pymol-setup.py.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file setup.py Hunk #1 succeeded at 374 (offset 97 lines). Patch #1 (pymol-wmclass-main.patch): + echo 'Patch #1 (pymol-wmclass-main.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file layer5/main.cpp Hunk #2 succeeded at 1035 (offset 5 lines). Hunk #3 succeeded at 1159 (offset 5 lines). Hunk #4 succeeded at 1647 (offset -7 lines). Patch #2 (pymol-wmclass-pmgapp.patch): + echo 'Patch #2 (pymol-wmclass-pmgapp.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file modules/pmg_tk/PMGApp.py Hunk #1 succeeded at 322 (offset 2 lines). + mv modules/web modules/pymol_web + sed -i 1d modules/pmg_tk/startup/apbs_tools.py + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' test/cyg test/run test/show + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.OHYqYg + umask 022 + cd /builddir/build/BUILD + cd pymol-1.9.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' numpy not available running build running build_py creating build/lib.linux-riscv64-3.6 creating build/lib.linux-riscv64-3.6/pymol2 copying modules/pymol2/cmd2.py -> build/lib.linux-riscv64-3.6/pymol2 copying modules/pymol2/__init__.py -> build/lib.linux-riscv64-3.6/pymol2 creating build/lib.linux-riscv64-3.6/chempy copying modules/chempy/solvate.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/mol.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/pdb.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/lst.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/hetatm.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/charge.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/protein_amber.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/arc.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/water_amber.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/place.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/sdf.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/cc1.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/neighbor.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/bond_mmff.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/xyz.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/bonds.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/mass.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/cex.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/pkl.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/gamess1.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/cpv.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/mmd.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/water_residues.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/io.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/mae.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/map.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/mol2.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/protein_residues.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/bond_amber.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/protein.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/gms.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/protein_amber99.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/brick.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/protein_mmff.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/dictdb.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/__init__.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/models.py -> build/lib.linux-riscv64-3.6/chempy copying modules/chempy/cif.py -> build/lib.linux-riscv64-3.6/chempy creating build/lib.linux-riscv64-3.6/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.linux-riscv64-3.6/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.linux-riscv64-3.6/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.linux-riscv64-3.6/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.linux-riscv64-3.6/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.linux-riscv64-3.6/chempy/bmin creating build/lib.linux-riscv64-3.6/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.linux-riscv64-3.6/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.linux-riscv64-3.6/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.linux-riscv64-3.6/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.linux-riscv64-3.6/chempy/champ creating build/lib.linux-riscv64-3.6/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.linux-riscv64-3.6/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.linux-riscv64-3.6/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.linux-riscv64-3.6/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.linux-riscv64-3.6/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.linux-riscv64-3.6/chempy/tinker creating build/lib.linux-riscv64-3.6/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.linux-riscv64-3.6/chempy/fragments creating build/lib.linux-riscv64-3.6/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.linux-riscv64-3.6/chempy/fast creating build/lib.linux-riscv64-3.6/chempy/mmtf copying modules/chempy/mmtf/io.py -> build/lib.linux-riscv64-3.6/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> build/lib.linux-riscv64-3.6/chempy/mmtf creating build/lib.linux-riscv64-3.6/pymol copying modules/pymol/setting.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/invocation.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/parser.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/monitoring.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/fitting.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/cmd.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/gui.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/creating.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/checking.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/commanding.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/helping.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/menu.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/constants_palette.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/cgo.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/povray.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/morphing.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/movie.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/querying.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/controlling.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/xwin.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/util.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/callback.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/moving.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/parsing.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/exporting.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/constants.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/computing.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/rpc.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/shortcut.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/feedingback.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/selector.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/__main__.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/m4x.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/wizarding.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/keywords.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/vfont.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/locking.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/externing.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/importing.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/keyboard.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/colorramping.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/api.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/editor.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/completing.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/headering.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/editing.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/__init__.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/xray.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/pymolhttpd.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/experimenting.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/selecting.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/internal.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/preset.py -> build/lib.linux-riscv64-3.6/pymol copying modules/pymol/viewing.py -> build/lib.linux-riscv64-3.6/pymol creating build/lib.linux-riscv64-3.6/pymol/embed copying modules/pymol/embed/__init__.py -> build/lib.linux-riscv64-3.6/pymol/embed creating build/lib.linux-riscv64-3.6/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.linux-riscv64-3.6/pymol/embed/epymol creating build/lib.linux-riscv64-3.6/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.linux-riscv64-3.6/pymol/embed/wxpymol creating build/lib.linux-riscv64-3.6/pymol/opengl copying modules/pymol/opengl/__init__.py -> build/lib.linux-riscv64-3.6/pymol/opengl creating build/lib.linux-riscv64-3.6/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.linux-riscv64-3.6/pymol/opengl/glu creating build/lib.linux-riscv64-3.6/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.linux-riscv64-3.6/pymol/opengl/glut creating build/lib.linux-riscv64-3.6/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.linux-riscv64-3.6/pymol/opengl/gl creating build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/command.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.linux-riscv64-3.6/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.linux-riscv64-3.6/pymol/wizard creating build/lib.linux-riscv64-3.6/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.linux-riscv64-3.6/pymol/contrib creating build/lib.linux-riscv64-3.6/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.linux-riscv64-3.6/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.linux-riscv64-3.6/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.linux-riscv64-3.6/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.linux-riscv64-3.6/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-riscv64-3.6/pymol/plugins creating build/lib.linux-riscv64-3.6/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.linux-riscv64-3.6/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.linux-riscv64-3.6/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.linux-riscv64-3.6/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.linux-riscv64-3.6/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-riscv64-3.6/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.linux-riscv64-3.6/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-riscv64-3.6/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.linux-riscv64-3.6/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.linux-riscv64-3.6/pmg_tk creating build/lib.linux-riscv64-3.6/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-riscv64-3.6/pmg_tk/skins creating build/lib.linux-riscv64-3.6/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-riscv64-3.6/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-riscv64-3.6/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-riscv64-3.6/pmg_tk/skins/normal creating build/lib.linux-riscv64-3.6/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-riscv64-3.6/pmg_tk/skins/demo creating build/lib.linux-riscv64-3.6/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.linux-riscv64-3.6/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.linux-riscv64-3.6/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-riscv64-3.6/pmg_tk/startup running build_ext building 'pymol._cmd' extension creating build/temp.linux-riscv64-3.6 creating build/temp.linux-riscv64-3.6/build creating build/temp.linux-riscv64-3.6/build/generated creating build/temp.linux-riscv64-3.6/contrib creating build/temp.linux-riscv64-3.6/contrib/mmtf-c creating build/temp.linux-riscv64-3.6/contrib/uiuc creating build/temp.linux-riscv64-3.6/contrib/uiuc/plugins creating build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-riscv64-3.6/layer0 creating build/temp.linux-riscv64-3.6/layer1 creating build/temp.linux-riscv64-3.6/layer2 creating build/temp.linux-riscv64-3.6/layer3 creating build/temp.linux-riscv64-3.6/layer4 creating build/temp.linux-riscv64-3.6/layer5 creating build/temp.linux-riscv64-3.6/modules creating build/temp.linux-riscv64-3.6/modules/cealign creating build/temp.linux-riscv64-3.6/modules/cealign/src creating build/temp.linux-riscv64-3.6/ov creating build/temp.linux-riscv64-3.6/ov/src gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c build/generated/ShaderText.c -o build/temp.linux-riscv64-3.6/build/generated/ShaderText.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/mmtf-c/mmtf_parser.cpp -o build/temp.linux-riscv64-3.6/contrib/mmtf-c/mmtf_parser.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable] BUILDSTDERR: fio_size_t readlen; /* number of bytes actually read */ BUILDSTDERR: ^~~~~~~ gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:267:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); BUILDSTDERR: ^~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:269:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ BUILDSTDERR: if(ok) { BUILDSTDERR: ^~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:405:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); BUILDSTDERR: ^~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ BUILDSTDERR: return ok; BUILDSTDERR: ^~~~~~ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(skip, 1, 8, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(data->file, "%*s %f %f %f", &x, &y, &z); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if (NULL == fgets(fbuffer, 1024, data->file)) BUILDSTDERR: ^~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ BUILDSTDERR: if (NULL == fgets(fbuffer, 1024, data->file)) BUILDSTDERR: ^~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(fbuffer, 1024, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(fbuffer, 1024, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] BUILDSTDERR: char *name, *type; BUILDSTDERR: ^~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable] BUILDSTDERR: char *name, *type; BUILDSTDERR: ^~~~ gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(magicchar,sizeof(char),4,fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&igarb,sizeof(int),1,fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable] BUILDSTDERR: double timesteprst; BUILDSTDERR: ^~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(title, 82, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, 82, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(line, LINESIZE, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] BUILDSTDERR: sprintf(atom->resname, "%d", resid); BUILDSTDERR: ^~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] BUILDSTDERR: sprintf(atom->resname, "%d", resid); BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 8 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Block.cpp -o build/temp.linux-riscv64-3.6/layer0/Block.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable] BUILDSTDERR: char word[3][BUFSIZ]; BUILDSTDERR: ^~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable] BUILDSTDERR: char word[7][BUFSIZ]; BUILDSTDERR: ^~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable] BUILDSTDERR: char word[6][BUFSIZ]; BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 1024, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] BUILDSTDERR: strncpy(tmptype, atom->type, sizeof(atom->type)); BUILDSTDERR: ^ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Crystal.cpp -o build/temp.linux-riscv64-3.6/layer0/Crystal.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable] BUILDSTDERR: molfile_qm_hessian_t *hessian_data; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, poscar); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, poscar); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, poscar); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, poscar); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, poscar); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(data->file, " Ene= %f\n", &orbenergy); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(data->file, " Spin= %s\n", spin); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(data->file, " Occup= %f\n", &occu); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(readbuf, 1024, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fscanf(data->file, "%d", &natm); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1398:41: warning: ‘%s’ directive writing up to 8191 bytes into a region of size 8190 [-Wformat-overflow=] BUILDSTDERR: sprintf(data->basis_string, "%d-%s%sG%s", BUILDSTDERR: ^~ BUILDSTDERR: ngauss, (data->gbasis+1), diffuse, BUILDSTDERR: ~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, BUILDSTDERR: from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 16386) into a destination of size 8192 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1394:43: warning: ‘%s’ directive writing up to 8191 bytes into a region of size between 8176 and 8186 [-Wformat-overflow=] BUILDSTDERR: sprintf(data->basis_string, "STO-%dG%s%s", BUILDSTDERR: ^~ BUILDSTDERR: ngauss, diffuse, polarization); BUILDSTDERR: ~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, BUILDSTDERR: from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 16399 bytes into a destination of size 8192 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(lineptr, LINESIZE, data->file); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Debug.cpp -o build/temp.linux-riscv64-3.6/layer0/Debug.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Deferred.cpp -o build/temp.linux-riscv64-3.6/layer0/Deferred.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Err.cpp -o build/temp.linux-riscv64-3.6/layer0/Err.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable] BUILDSTDERR: int i, numatoms; BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’: BUILDSTDERR: contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&filen, sizeof(namdbin_int32), 1, fd); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Feedback.cpp -o build/temp.linux-riscv64-3.6/layer0/Feedback.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Match.cpp -o build/temp.linux-riscv64-3.6/layer0/Match.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Field.cpp -o build/temp.linux-riscv64-3.6/layer0/Field.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Triangle.cpp -o build/temp.linux-riscv64-3.6/layer0/Triangle.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Matrix.cpp -o build/temp.linux-riscv64-3.6/layer0/Matrix.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Extrude.cpp -o build/temp.linux-riscv64-3.6/layer1/Extrude.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/File.cpp -o build/temp.linux-riscv64-3.6/layer0/File.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Isosurf.cpp -o build/temp.linux-riscv64-3.6/layer0/Isosurf.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Util.cpp -o build/temp.linux-riscv64-3.6/layer0/Util.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/MemoryCache.cpp -o build/temp.linux-riscv64-3.6/layer0/MemoryCache.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/MemoryDebug.cpp -o build/temp.linux-riscv64-3.6/layer0/MemoryDebug.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/MyPNG.cpp -o build/temp.linux-riscv64-3.6/layer0/MyPNG.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Util2.cpp -o build/temp.linux-riscv64-3.6/layer0/Util2.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Font.cpp -o build/temp.linux-riscv64-3.6/layer1/Font.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Parse.cpp -o build/temp.linux-riscv64-3.6/layer0/Parse.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Vector.cpp -o build/temp.linux-riscv64-3.6/layer0/Vector.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Pixmap.cpp -o build/temp.linux-riscv64-3.6/layer0/Pixmap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/FontGLUT.cpp -o build/temp.linux-riscv64-3.6/layer1/FontGLUT.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Queue.cpp -o build/temp.linux-riscv64-3.6/layer0/Queue.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/ShaderMgr.cpp -o build/temp.linux-riscv64-3.6/layer0/ShaderMgr.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Map.cpp -o build/temp.linux-riscv64-3.6/layer0/Map.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Word.cpp -o build/temp.linux-riscv64-3.6/layer0/Word.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/FontGLUT8x13.cpp -o build/temp.linux-riscv64-3.6/layer1/FontGLUT8x13.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Sphere.cpp -o build/temp.linux-riscv64-3.6/layer0/Sphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/os_gl.cpp -o build/temp.linux-riscv64-3.6/layer0/os_gl.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/FontGLUT9x15.cpp -o build/temp.linux-riscv64-3.6/layer1/FontGLUT9x15.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Pop.cpp -o build/temp.linux-riscv64-3.6/layer1/Pop.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Basis.cpp -o build/temp.linux-riscv64-3.6/layer1/Basis.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/ButMode.cpp -o build/temp.linux-riscv64-3.6/layer1/ButMode.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/PyMOLObject.cpp -o build/temp.linux-riscv64-3.6/layer1/PyMOLObject.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/FontGLUTHel10.cpp -o build/temp.linux-riscv64-3.6/layer1/FontGLUTHel10.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Tetsurf.cpp -o build/temp.linux-riscv64-3.6/layer0/Tetsurf.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/FontGLUTHel12.cpp -o build/temp.linux-riscv64-3.6/layer1/FontGLUTHel12.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/FontGLUTHel18.cpp -o build/temp.linux-riscv64-3.6/layer1/FontGLUTHel18.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/FontType.cpp -o build/temp.linux-riscv64-3.6/layer1/FontType.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/CGO.cpp -o build/temp.linux-riscv64-3.6/layer1/CGO.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Ray.cpp -o build/temp.linux-riscv64-3.6/layer1/Ray.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Texture.cpp -o build/temp.linux-riscv64-3.6/layer0/Texture.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Movie.cpp -o build/temp.linux-riscv64-3.6/layer1/Movie.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer0/Tracker.cpp -o build/temp.linux-riscv64-3.6/layer0/Tracker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Wizard.cpp -o build/temp.linux-riscv64-3.6/layer1/Wizard.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Ortho.cpp -o build/temp.linux-riscv64-3.6/layer1/Ortho.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/COLLADA.cpp -o build/temp.linux-riscv64-3.6/layer1/COLLADA.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/AssemblyHelpers.cpp -o build/temp.linux-riscv64-3.6/layer2/AssemblyHelpers.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Rep.cpp -o build/temp.linux-riscv64-3.6/layer1/Rep.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/P.cpp -o build/temp.linux-riscv64-3.6/layer1/P.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Character.cpp -o build/temp.linux-riscv64-3.6/layer1/Character.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Scene.cpp -o build/temp.linux-riscv64-3.6/layer1/Scene.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/AtomInfo.cpp -o build/temp.linux-riscv64-3.6/layer2/AtomInfo.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Color.cpp -o build/temp.linux-riscv64-3.6/layer1/Color.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/PConv.cpp -o build/temp.linux-riscv64-3.6/layer1/PConv.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/AtomInfoHistory.cpp -o build/temp.linux-riscv64-3.6/layer2/AtomInfoHistory.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/MolV3000.cpp -o build/temp.linux-riscv64-3.6/layer2/MolV3000.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Control.cpp -o build/temp.linux-riscv64-3.6/layer1/Control.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/ScrollBar.cpp -o build/temp.linux-riscv64-3.6/layer1/ScrollBar.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectAlignment.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectAlignment.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/BondTypeHistory.cpp -o build/temp.linux-riscv64-3.6/layer2/BondTypeHistory.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectSurface.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectSurface.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Seq.cpp -o build/temp.linux-riscv64-3.6/layer1/Seq.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/CifFile.cpp -o build/temp.linux-riscv64-3.6/layer2/CifFile.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectCGO.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectCGO.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectVolume.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectVolume.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Setting.cpp -o build/temp.linux-riscv64-3.6/layer1/Setting.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/CifMoleculeReader.cpp -o build/temp.linux-riscv64-3.6/layer2/CifMoleculeReader.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectCallback.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectCallback.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepAngle.cpp -o build/temp.linux-riscv64-3.6/layer2/RepAngle.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectDist.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectDist.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Shaker.cpp -o build/temp.linux-riscv64-3.6/layer1/Shaker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepCartoon.cpp -o build/temp.linux-riscv64-3.6/layer2/RepCartoon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectGadget.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectGadget.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Symmetry.cpp -o build/temp.linux-riscv64-3.6/layer1/Symmetry.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectGadgetRamp.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepCylBond.cpp -o build/temp.linux-riscv64-3.6/layer2/RepCylBond.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/CoordSet.cpp -o build/temp.linux-riscv64-3.6/layer2/CoordSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/Text.cpp -o build/temp.linux-riscv64-3.6/layer1/Text.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectGroup.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectGroup.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/DistSet.cpp -o build/temp.linux-riscv64-3.6/layer2/DistSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepDihedral.cpp -o build/temp.linux-riscv64-3.6/layer2/RepDihedral.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectMap.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectMap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/GadgetSet.cpp -o build/temp.linux-riscv64-3.6/layer2/GadgetSet.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepDistDash.cpp -o build/temp.linux-riscv64-3.6/layer2/RepDistDash.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/MmodTyping.cpp -o build/temp.linux-riscv64-3.6/layer2/MmodTyping.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectMesh.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectMesh.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepDistLabel.cpp -o build/temp.linux-riscv64-3.6/layer2/RepDistLabel.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-riscv64-3.6/layer2/MmtfMoleculeReader.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepDot.cpp -o build/temp.linux-riscv64-3.6/layer2/RepDot.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectMolecule.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectMolecule.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/Mol2Typing.cpp -o build/temp.linux-riscv64-3.6/layer2/Mol2Typing.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepEllipsoid.cpp -o build/temp.linux-riscv64-3.6/layer2/RepEllipsoid.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-riscv64-3.6/layer2/RepNonbondedSphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepLabel.cpp -o build/temp.linux-riscv64-3.6/layer2/RepLabel.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepRibbon.cpp -o build/temp.linux-riscv64-3.6/layer2/RepRibbon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepMesh.cpp -o build/temp.linux-riscv64-3.6/layer2/RepMesh.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectMolecule2.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectMolecule2.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepSphere.cpp -o build/temp.linux-riscv64-3.6/layer2/RepSphere.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepNonbonded.cpp -o build/temp.linux-riscv64-3.6/layer2/RepNonbonded.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepSurface.cpp -o build/temp.linux-riscv64-3.6/layer2/RepSurface.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/ObjectSlice.cpp -o build/temp.linux-riscv64-3.6/layer2/ObjectSlice.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer3/MoleculeExporter.cpp -o build/temp.linux-riscv64-3.6/layer3/MoleculeExporter.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c ov/src/OVContext.cpp -o build/temp.linux-riscv64-3.6/ov/src/OVContext.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c ov/src/OVHeap.cpp -o build/temp.linux-riscv64-3.6/ov/src/OVHeap.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c ov/src/OVHeapArray.cpp -o build/temp.linux-riscv64-3.6/ov/src/OVHeapArray.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c ov/src/OVLexicon.cpp -o build/temp.linux-riscv64-3.6/ov/src/OVLexicon.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c ov/src/OVOneToAny.cpp -o build/temp.linux-riscv64-3.6/ov/src/OVOneToAny.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer3/MovieScene.cpp -o build/temp.linux-riscv64-3.6/layer3/MovieScene.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c ov/src/OVOneToOne.cpp -o build/temp.linux-riscv64-3.6/ov/src/OVOneToOne.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/RepWireBond.cpp -o build/temp.linux-riscv64-3.6/layer2/RepWireBond.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c ov/src/OVRandom.cpp -o build/temp.linux-riscv64-3.6/ov/src/OVRandom.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c ov/src/ov_utility.cpp -o build/temp.linux-riscv64-3.6/ov/src/ov_utility.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/Sculpt.cpp -o build/temp.linux-riscv64-3.6/layer2/Sculpt.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/SculptCache.cpp -o build/temp.linux-riscv64-3.6/layer2/SculptCache.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer3/PlugIOManager.cpp -o build/temp.linux-riscv64-3.6/layer3/PlugIOManager.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/SideChainHelper.cpp -o build/temp.linux-riscv64-3.6/layer2/SideChainHelper.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer3/Seeker.cpp -o build/temp.linux-riscv64-3.6/layer3/Seeker.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer2/VFont.cpp -o build/temp.linux-riscv64-3.6/layer2/VFont.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer3/Selector.cpp -o build/temp.linux-riscv64-3.6/layer3/Selector.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer3/AtomIterators.cpp -o build/temp.linux-riscv64-3.6/layer3/AtomIterators.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-riscv64-3.6/layer3/CifDataValueFormatter.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer3/Editor.cpp -o build/temp.linux-riscv64-3.6/layer3/Editor.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/TypeFace.cpp -o build/temp.linux-riscv64-3.6/layer1/TypeFace.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer1/View.cpp -o build/temp.linux-riscv64-3.6/layer1/View.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer4/Cmd.cpp -o build/temp.linux-riscv64-3.6/layer4/Cmd.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer3/Executive.cpp -o build/temp.linux-riscv64-3.6/layer3/Executive.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer4/Export.cpp -o build/temp.linux-riscv64-3.6/layer4/Export.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer4/Menu.cpp -o build/temp.linux-riscv64-3.6/layer4/Menu.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer4/PopUp.cpp -o build/temp.linux-riscv64-3.6/layer4/PopUp.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer5/PyMOL.cpp -o build/temp.linux-riscv64-3.6/layer5/PyMOL.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer5/TestPyMOL.cpp -o build/temp.linux-riscv64-3.6/layer5/TestPyMOL.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c layer5/main.cpp -o build/temp.linux-riscv64-3.6/layer5/main.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-riscv64-3.6/modules/cealign/src/ccealignmodule.o -Wno-write-strings -Wno-unused-function -Wno-char-subscripts g++ -pthread -shared -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-3.6/build/generated/ShaderText.o build/temp.linux-riscv64-3.6/contrib/mmtf-c/mmtf_parser.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-riscv64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-riscv64-3.6/layer0/Block.o build/temp.linux-riscv64-3.6/layer0/Crystal.o build/temp.linux-riscv64-3.6/layer0/Debug.o build/temp.linux-riscv64-3.6/layer0/Deferred.o build/temp.linux-riscv64-3.6/layer0/Err.o build/temp.linux-riscv64-3.6/layer0/Feedback.o build/temp.linux-riscv64-3.6/layer0/Field.o build/temp.linux-riscv64-3.6/layer0/File.o build/temp.linux-riscv64-3.6/layer0/Isosurf.o build/temp.linux-riscv64-3.6/layer0/Map.o build/temp.linux-riscv64-3.6/layer0/Match.o build/temp.linux-riscv64-3.6/layer0/Matrix.o build/temp.linux-riscv64-3.6/layer0/MemoryCache.o build/temp.linux-riscv64-3.6/layer0/MemoryDebug.o build/temp.linux-riscv64-3.6/layer0/MyPNG.o build/temp.linux-riscv64-3.6/layer0/Parse.o build/temp.linux-riscv64-3.6/layer0/Pixmap.o build/temp.linux-riscv64-3.6/layer0/Queue.o build/temp.linux-riscv64-3.6/layer0/ShaderMgr.o build/temp.linux-riscv64-3.6/layer0/Sphere.o build/temp.linux-riscv64-3.6/layer0/Tetsurf.o build/temp.linux-riscv64-3.6/layer0/Texture.o build/temp.linux-riscv64-3.6/layer0/Tracker.o build/temp.linux-riscv64-3.6/layer0/Triangle.o build/temp.linux-riscv64-3.6/layer0/Util.o build/temp.linux-riscv64-3.6/layer0/Util2.o build/temp.linux-riscv64-3.6/layer0/Vector.o build/temp.linux-riscv64-3.6/layer0/Word.o build/temp.linux-riscv64-3.6/layer0/os_gl.o build/temp.linux-riscv64-3.6/layer1/Basis.o build/temp.linux-riscv64-3.6/layer1/ButMode.o build/temp.linux-riscv64-3.6/layer1/CGO.o build/temp.linux-riscv64-3.6/layer1/COLLADA.o build/temp.linux-riscv64-3.6/layer1/Character.o build/temp.linux-riscv64-3.6/layer1/Color.o build/temp.linux-riscv64-3.6/layer1/Control.o build/temp.linux-riscv64-3.6/layer1/Extrude.o build/temp.linux-riscv64-3.6/layer1/Font.o build/temp.linux-riscv64-3.6/layer1/FontGLUT.o build/temp.linux-riscv64-3.6/layer1/FontGLUT8x13.o build/temp.linux-riscv64-3.6/layer1/FontGLUT9x15.o build/temp.linux-riscv64-3.6/layer1/FontGLUTHel10.o build/temp.linux-riscv64-3.6/layer1/FontGLUTHel12.o build/temp.linux-riscv64-3.6/layer1/FontGLUTHel18.o build/temp.linux-riscv64-3.6/layer1/FontType.o build/temp.linux-riscv64-3.6/layer1/Movie.o build/temp.linux-riscv64-3.6/layer1/Ortho.o build/temp.linux-riscv64-3.6/layer1/P.o build/temp.linux-riscv64-3.6/layer1/PConv.o build/temp.linux-riscv64-3.6/layer1/Pop.o build/temp.linux-riscv64-3.6/layer1/PyMOLObject.o build/temp.linux-riscv64-3.6/layer1/Ray.o build/temp.linux-riscv64-3.6/layer1/Rep.o build/temp.linux-riscv64-3.6/layer1/Scene.o build/temp.linux-riscv64-3.6/layer1/ScrollBar.o build/temp.linux-riscv64-3.6/layer1/Seq.o build/temp.linux-riscv64-3.6/layer1/Setting.o build/temp.linux-riscv64-3.6/layer1/Shaker.o build/temp.linux-riscv64-3.6/layer1/Symmetry.o build/temp.linux-riscv64-3.6/layer1/Text.o build/temp.linux-riscv64-3.6/layer1/TypeFace.o build/temp.linux-riscv64-3.6/layer1/View.o build/temp.linux-riscv64-3.6/layer1/Wizard.o build/temp.linux-riscv64-3.6/layer2/AssemblyHelpers.o build/temp.linux-riscv64-3.6/layer2/AtomInfo.o build/temp.linux-riscv64-3.6/layer2/AtomInfoHistory.o build/temp.linux-riscv64-3.6/layer2/BondTypeHistory.o build/temp.linux-riscv64-3.6/layer2/CifFile.o build/temp.linux-riscv64-3.6/layer2/CifMoleculeReader.o build/temp.linux-riscv64-3.6/layer2/CoordSet.o build/temp.linux-riscv64-3.6/layer2/DistSet.o build/temp.linux-riscv64-3.6/layer2/GadgetSet.o build/temp.linux-riscv64-3.6/layer2/MmodTyping.o build/temp.linux-riscv64-3.6/layer2/MmtfMoleculeReader.o build/temp.linux-riscv64-3.6/layer2/Mol2Typing.o build/temp.linux-riscv64-3.6/layer2/MolV3000.o build/temp.linux-riscv64-3.6/layer2/ObjectAlignment.o build/temp.linux-riscv64-3.6/layer2/ObjectCGO.o build/temp.linux-riscv64-3.6/layer2/ObjectCallback.o build/temp.linux-riscv64-3.6/layer2/ObjectDist.o build/temp.linux-riscv64-3.6/layer2/ObjectGadget.o build/temp.linux-riscv64-3.6/layer2/ObjectGadgetRamp.o build/temp.linux-riscv64-3.6/layer2/ObjectGroup.o build/temp.linux-riscv64-3.6/layer2/ObjectMap.o build/temp.linux-riscv64-3.6/layer2/ObjectMesh.o build/temp.linux-riscv64-3.6/layer2/ObjectMolecule.o build/temp.linux-riscv64-3.6/layer2/ObjectMolecule2.o build/temp.linux-riscv64-3.6/layer2/ObjectSlice.o build/temp.linux-riscv64-3.6/layer2/ObjectSurface.o build/temp.linux-riscv64-3.6/layer2/ObjectVolume.o build/temp.linux-riscv64-3.6/layer2/RepAngle.o build/temp.linux-riscv64-3.6/layer2/RepCartoon.o build/temp.linux-riscv64-3.6/layer2/RepCylBond.o build/temp.linux-riscv64-3.6/layer2/RepDihedral.o build/temp.linux-riscv64-3.6/layer2/RepDistDash.o build/temp.linux-riscv64-3.6/layer2/RepDistLabel.o build/temp.linux-riscv64-3.6/layer2/RepDot.o build/temp.linux-riscv64-3.6/layer2/RepEllipsoid.o build/temp.linux-riscv64-3.6/layer2/RepLabel.o build/temp.linux-riscv64-3.6/layer2/RepMesh.o build/temp.linux-riscv64-3.6/layer2/RepNonbonded.o build/temp.linux-riscv64-3.6/layer2/RepNonbondedSphere.o build/temp.linux-riscv64-3.6/layer2/RepRibbon.o build/temp.linux-riscv64-3.6/layer2/RepSphere.o build/temp.linux-riscv64-3.6/layer2/RepSurface.o build/temp.linux-riscv64-3.6/layer2/RepWireBond.o build/temp.linux-riscv64-3.6/layer2/Sculpt.o build/temp.linux-riscv64-3.6/layer2/SculptCache.o build/temp.linux-riscv64-3.6/layer2/SideChainHelper.o build/temp.linux-riscv64-3.6/layer2/VFont.o build/temp.linux-riscv64-3.6/layer3/AtomIterators.o build/temp.linux-riscv64-3.6/layer3/CifDataValueFormatter.o build/temp.linux-riscv64-3.6/layer3/Editor.o build/temp.linux-riscv64-3.6/layer3/Executive.o build/temp.linux-riscv64-3.6/layer3/MoleculeExporter.o build/temp.linux-riscv64-3.6/layer3/MovieScene.o build/temp.linux-riscv64-3.6/layer3/PlugIOManager.o build/temp.linux-riscv64-3.6/layer3/Seeker.o build/temp.linux-riscv64-3.6/layer3/Selector.o build/temp.linux-riscv64-3.6/layer4/Cmd.o build/temp.linux-riscv64-3.6/layer4/Export.o build/temp.linux-riscv64-3.6/layer4/Menu.o build/temp.linux-riscv64-3.6/layer4/PopUp.o build/temp.linux-riscv64-3.6/layer5/PyMOL.o build/temp.linux-riscv64-3.6/layer5/TestPyMOL.o build/temp.linux-riscv64-3.6/layer5/main.o build/temp.linux-riscv64-3.6/modules/cealign/src/ccealignmodule.o build/temp.linux-riscv64-3.6/ov/src/OVContext.o build/temp.linux-riscv64-3.6/ov/src/OVHeap.o build/temp.linux-riscv64-3.6/ov/src/OVHeapArray.o build/temp.linux-riscv64-3.6/ov/src/OVLexicon.o build/temp.linux-riscv64-3.6/ov/src/OVOneToAny.o build/temp.linux-riscv64-3.6/ov/src/OVOneToOne.o build/temp.linux-riscv64-3.6/ov/src/OVRandom.o build/temp.linux-riscv64-3.6/ov/src/ov_utility.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lxml2 -lmsgpackc -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -lpython3.6m -o build/lib.linux-riscv64-3.6/pymol/_cmd.cpython-36m-riscv64-linux-gnu.so building 'chempy.champ._champ' extension creating build/temp.linux-riscv64-3.6/contrib/champ gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c contrib/champ/champ.c -o build/temp.linux-riscv64-3.6/contrib/champ/champ.o gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c contrib/champ/champ_module.c -o build/temp.linux-riscv64-3.6/contrib/champ/champ_module.o gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c contrib/champ/chiral.c -o build/temp.linux-riscv64-3.6/contrib/champ/chiral.o gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c contrib/champ/err2.c -o build/temp.linux-riscv64-3.6/contrib/champ/err2.o gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c contrib/champ/feedback2.c -o build/temp.linux-riscv64-3.6/contrib/champ/feedback2.o gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c contrib/champ/list.c -o build/temp.linux-riscv64-3.6/contrib/champ/list.o gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c contrib/champ/os_memory.c -o build/temp.linux-riscv64-3.6/contrib/champ/os_memory.o gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c contrib/champ/sort.c -o build/temp.linux-riscv64-3.6/contrib/champ/sort.o BUILDSTDERR: contrib/champ/os_memory.c: In function ‘OSMemoryZero’: BUILDSTDERR: contrib/champ/os_memory.c:67:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] BUILDSTDERR: while(count&&(((int)p)&mask)) { BUILDSTDERR: ^ BUILDSTDERR: contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’: BUILDSTDERR: contrib/champ/os_memory.c:149:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] BUILDSTDERR: hash=(int)rec; BUILDSTDERR: ^ BUILDSTDERR: contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’: BUILDSTDERR: contrib/champ/os_memory.c:162:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] BUILDSTDERR: hash=(int)rec; BUILDSTDERR: ^ gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c contrib/champ/strblock.c -o build/temp.linux-riscv64-3.6/contrib/champ/strblock.o gcc -pthread -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c contrib/champ/vla.c -o build/temp.linux-riscv64-3.6/contrib/champ/vla.o gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-3.6/contrib/champ/champ.o build/temp.linux-riscv64-3.6/contrib/champ/champ_module.o build/temp.linux-riscv64-3.6/contrib/champ/chiral.o build/temp.linux-riscv64-3.6/contrib/champ/err2.o build/temp.linux-riscv64-3.6/contrib/champ/feedback2.o build/temp.linux-riscv64-3.6/contrib/champ/list.o build/temp.linux-riscv64-3.6/contrib/champ/os_memory.o build/temp.linux-riscv64-3.6/contrib/champ/sort.o build/temp.linux-riscv64-3.6/contrib/champ/strblock.o build/temp.linux-riscv64-3.6/contrib/champ/vla.o -L/usr/lib64 -lpython3.6m -o build/lib.linux-riscv64-3.6/chempy/champ/_champ.cpython-36m-riscv64-linux-gnu.so + sleep 1 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.fH0xhn + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64 + cd pymol-1.9.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64 numpy not available running install running install_lib creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64 creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6 creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol2 copying build/lib.linux-riscv64-3.6/pymol2/cmd2.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol2 copying build/lib.linux-riscv64-3.6/pymol2/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol2 creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/solvate.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/mol.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/pdb.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/lst.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/hetatm.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/charge.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/protein_amber.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/arc.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/water_amber.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/place.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/sdf.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin copying build/lib.linux-riscv64-3.6/chempy/bmin/state.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin copying build/lib.linux-riscv64-3.6/chempy/bmin/util.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin copying build/lib.linux-riscv64-3.6/chempy/bmin/realtime.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin copying build/lib.linux-riscv64-3.6/chempy/bmin/commands.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin copying build/lib.linux-riscv64-3.6/chempy/bmin/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin copying build/lib.linux-riscv64-3.6/chempy/cc1.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/champ copying build/lib.linux-riscv64-3.6/chempy/champ/_champ.cpython-36m-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/champ copying build/lib.linux-riscv64-3.6/chempy/champ/amber99.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/champ copying build/lib.linux-riscv64-3.6/chempy/champ/formal_charges.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/champ copying build/lib.linux-riscv64-3.6/chempy/champ/assign.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/champ copying build/lib.linux-riscv64-3.6/chempy/champ/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/champ creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker copying build/lib.linux-riscv64-3.6/chempy/tinker/state.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker copying build/lib.linux-riscv64-3.6/chempy/tinker/realtime.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker copying build/lib.linux-riscv64-3.6/chempy/tinker/keyword.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker copying build/lib.linux-riscv64-3.6/chempy/tinker/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker copying build/lib.linux-riscv64-3.6/chempy/tinker/amber.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker copying build/lib.linux-riscv64-3.6/chempy/neighbor.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/fragments copying build/lib.linux-riscv64-3.6/chempy/fragments/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/fragments copying build/lib.linux-riscv64-3.6/chempy/bond_mmff.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/xyz.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/bonds.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/mass.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/cex.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/pkl.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/gamess1.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/cpv.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/mmd.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/water_residues.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/io.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/mae.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/map.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/mol2.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/protein_residues.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/bond_amber.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/protein.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/gms.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/protein_amber99.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/brick.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/protein_mmff.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/dictdb.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy copying build/lib.linux-riscv64-3.6/chempy/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/fast copying build/lib.linux-riscv64-3.6/chempy/fast/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/fast copying build/lib.linux-riscv64-3.6/chempy/models.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/mmtf copying build/lib.linux-riscv64-3.6/chempy/mmtf/io.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/mmtf copying build/lib.linux-riscv64-3.6/chempy/mmtf/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/mmtf copying build/lib.linux-riscv64-3.6/chempy/cif.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/setting.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/invocation.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/parser.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/monitoring.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/fitting.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/embed creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/embed/epymol copying build/lib.linux-riscv64-3.6/pymol/embed/epymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/embed/epymol creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/embed/wxpymol copying build/lib.linux-riscv64-3.6/pymol/embed/wxpymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/embed/wxpymol copying build/lib.linux-riscv64-3.6/pymol/embed/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/embed copying build/lib.linux-riscv64-3.6/pymol/cmd.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/gui.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl/glu copying build/lib.linux-riscv64-3.6/pymol/opengl/glu/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl/glu creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl/glut copying build/lib.linux-riscv64-3.6/pymol/opengl/glut/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl/glut creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl/gl copying build/lib.linux-riscv64-3.6/pymol/opengl/gl/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl/gl copying build/lib.linux-riscv64-3.6/pymol/opengl/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl copying build/lib.linux-riscv64-3.6/pymol/creating.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/checking.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/_cmd.cpython-36m-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/commanding.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/helping.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/menu.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/constants_palette.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/cgo.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/povray.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/morphing.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/movie.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/querying.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/controlling.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/xwin.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/util.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/callback.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/moving.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/parsing.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/exporting.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/constants.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/computing.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/label.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/toggle.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/density.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/charge.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/renaming.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/pair_fit.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/pseudoatom.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/annotation.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/box.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/message.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/command.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/stereodemo.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/dragging.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/distance.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/fedora.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/sculpting.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/appearance.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/measurement.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/mutagenesis.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/demo.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/benchmark.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/security.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/filter.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/wizard/cleanup.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard copying build/lib.linux-riscv64-3.6/pymol/rpc.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/shortcut.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/feedingback.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/selector.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/__main__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/m4x.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/wizarding.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/keywords.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/contrib copying build/lib.linux-riscv64-3.6/pymol/contrib/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/contrib copying build/lib.linux-riscv64-3.6/pymol/vfont.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/locking.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/externing.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/importing.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/keyboard.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/colorramping.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/api.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/editor.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/completing.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/headering.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/editing.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/xray.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins copying build/lib.linux-riscv64-3.6/pymol/plugins/managergui.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins copying build/lib.linux-riscv64-3.6/pymol/plugins/repository.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins copying build/lib.linux-riscv64-3.6/pymol/plugins/installation.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins copying build/lib.linux-riscv64-3.6/pymol/plugins/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins copying build/lib.linux-riscv64-3.6/pymol/plugins/legacysupport.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins copying build/lib.linux-riscv64-3.6/pymol/pymolhttpd.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/experimenting.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/selecting.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/internal.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/preset.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol copying build/lib.linux-riscv64-3.6/pymol/viewing.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk copying build/lib.linux-riscv64-3.6/pmg_tk/Setting.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk copying build/lib.linux-riscv64-3.6/pmg_tk/Demo.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk copying build/lib.linux-riscv64-3.6/pmg_tk/TextEditor.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal copying build/lib.linux-riscv64-3.6/pmg_tk/skins/normal/builder.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal copying build/lib.linux-riscv64-3.6/pmg_tk/skins/normal/ModalWindow.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal copying build/lib.linux-riscv64-3.6/pmg_tk/skins/normal/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/demo copying build/lib.linux-riscv64-3.6/pmg_tk/skins/demo/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/demo copying build/lib.linux-riscv64-3.6/pmg_tk/skins/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins copying build/lib.linux-riscv64-3.6/pmg_tk/SetEditor.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk copying build/lib.linux-riscv64-3.6/pmg_tk/PyMOLMapLoad.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk copying build/lib.linux-riscv64-3.6/pmg_tk/PMGApp.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/startup copying build/lib.linux-riscv64-3.6/pmg_tk/startup/apbs_tools.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/startup copying build/lib.linux-riscv64-3.6/pmg_tk/startup/remote_pdb_load.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/startup copying build/lib.linux-riscv64-3.6/pmg_tk/startup/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/startup copying build/lib.linux-riscv64-3.6/pmg_tk/ColorEditor.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk copying build/lib.linux-riscv64-3.6/pmg_tk/__init__.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk copying build/lib.linux-riscv64-3.6/pmg_tk/volume.py -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol2/cmd2.py to cmd2.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol2/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/solvate.py to solvate.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/mol.py to mol.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/pdb.py to pdb.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/lst.py to lst.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/hetatm.py to hetatm.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/charge.py to charge.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/protein_amber.py to protein_amber.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/arc.py to arc.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/water_amber.py to water_amber.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/place.py to place.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/sdf.py to sdf.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin/state.py to state.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin/util.py to util.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin/realtime.py to realtime.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin/commands.py to commands.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bmin/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/cc1.py to cc1.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/champ/amber99.py to amber99.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/champ/formal_charges.py to formal_charges.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/champ/assign.py to assign.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/champ/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker/state.py to state.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker/realtime.py to realtime.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker/keyword.py to keyword.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/tinker/amber.py to amber.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/neighbor.py to neighbor.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/fragments/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bond_mmff.py to bond_mmff.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/xyz.py to xyz.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bonds.py to bonds.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/mass.py to mass.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/cex.py to cex.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/pkl.py to pkl.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/gamess1.py to gamess1.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/cpv.py to cpv.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/mmd.py to mmd.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/water_residues.py to water_residues.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/io.py to io.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/mae.py to mae.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/map.py to map.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/mol2.py to mol2.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/protein_residues.py to protein_residues.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/bond_amber.py to bond_amber.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/protein.py to protein.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/gms.py to gms.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/protein_amber99.py to protein_amber99.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/brick.py to brick.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/protein_mmff.py to protein_mmff.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/dictdb.py to dictdb.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/fast/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/models.py to models.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/mmtf/io.py to io.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/mmtf/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/chempy/cif.py to cif.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/setting.py to setting.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/invocation.py to invocation.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/parser.py to parser.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/monitoring.py to monitoring.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/fitting.py to fitting.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/embed/epymol/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/embed/wxpymol/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/embed/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/cmd.py to cmd.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/gui.py to gui.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl/glu/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl/glut/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl/gl/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/opengl/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/creating.py to creating.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/checking.py to checking.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/commanding.py to commanding.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/helping.py to helping.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/menu.py to menu.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/constants_palette.py to constants_palette.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/cgo.py to cgo.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/povray.py to povray.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/morphing.py to morphing.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/movie.py to movie.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/querying.py to querying.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/controlling.py to controlling.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/xwin.py to xwin.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/util.py to util.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/callback.py to callback.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/moving.py to moving.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/parsing.py to parsing.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/exporting.py to exporting.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/constants.py to constants.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/computing.py to computing.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/label.py to label.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/toggle.py to toggle.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/density.py to density.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/charge.py to charge.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/renaming.py to renaming.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/annotation.py to annotation.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/box.py to box.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/message.py to message.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/command.py to command.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/dragging.py to dragging.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/distance.py to distance.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/fedora.py to fedora.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/sculpting.py to sculpting.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/appearance.py to appearance.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/measurement.py to measurement.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/demo.py to demo.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/benchmark.py to benchmark.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/security.py to security.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/filter.py to filter.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizard/cleanup.py to cleanup.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/rpc.py to rpc.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/shortcut.py to shortcut.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/feedingback.py to feedingback.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/selector.py to selector.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/__main__.py to __main__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/m4x.py to m4x.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/wizarding.py to wizarding.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/keywords.py to keywords.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/contrib/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/vfont.py to vfont.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/locking.py to locking.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/externing.py to externing.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/importing.py to importing.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/keyboard.py to keyboard.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/colorramping.py to colorramping.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/api.py to api.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/editor.py to editor.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/completing.py to completing.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/headering.py to headering.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/editing.py to editing.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/xray.py to xray.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins/managergui.py to managergui.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins/repository.py to repository.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins/installation.py to installation.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/experimenting.py to experimenting.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/selecting.py to selecting.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/internal.py to internal.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/preset.py to preset.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/viewing.py to viewing.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/Setting.py to Setting.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/Demo.py to Demo.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/TextEditor.py to TextEditor.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal/builder.py to builder.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/skins/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/SetEditor.py to SetEditor.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/PMGApp.py to PMGApp.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/startup/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pmg_tk/volume.py to volume.cpython-36.pyc writing byte-compilation script '/tmp/tmp22zx4rj1.py' /usr/bin/python3 /tmp/tmp22zx4rj1.py removing /tmp/tmp22zx4rj1.py running install_egg_info Writing /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol-1.9.0.0-py3.6.egg-info creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path copying LICENSE -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path copying data -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/data copying test -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/test copying scripts -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/scripts copying examples -> /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/examples creating /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/bin + echo '#!/bin/sh' + echo 'export PYMOL_PATH=/usr/lib64/python3.6/site-packages/pymol' + echo '/usr/bin/python3 /usr/lib64/python3.6/site-packages/pymol/__init__.py "$@"' + cp -pr data examples test scripts /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/examples/devel/link_demo.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/examples/devel/particle01.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/examples/devel/particle02.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/test/inp/B03.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/test/inp/B05.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/test/inp/B11.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/test/ref/T01.log + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/examples/devel/link_demo.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/examples/devel/particle01.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/examples/devel/particle02.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/test/inp/B03.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/test/inp/B05.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/test/inp/B11.py + rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/lib64/python3.6/site-packages/pymol/pymol_path/test/ref/T01.log + mkdir -p /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/bin + install -p -m 755 pymol /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/bin/ + desktop-file-install --vendor= --dir=/builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/applications /builddir/build/SOURCES/pymol.desktop + mkdir -p /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/pixmaps + install -p -m 644 /builddir/build/SOURCES/pymol.png /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/pixmaps/ + mkdir -p /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/appdata + install -p -m 644 /builddir/build/SOURCES/pymol.appdata.xml /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/appdata/ + appstream-util validate-relax --nonet /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64//usr/share/appdata/pymol.appdata.xml BUILDSTDERR: /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64//usr/share/appdata/pymol.appdata.xml: GLib-GIO-Message: 15:37:57.558: Using the 'memory' GSettings backend. Your settings will not be saved or shared with other applications. OK + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: pymol-1.9.0-1.20180224svn4178.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Vfj8Sx + umask 022 + cd /builddir/build/BUILD + cd pymol-1.9.0 + DOCDIR=/builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/doc/pymol + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/doc/pymol + cp -pr AUTHORS /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/doc/pymol + cp -pr LICENSE /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/doc/pymol + cp -pr DEVELOPERS /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/doc/pymol + cp -pr README /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64/usr/share/doc/pymol + exit 0 Provides: application() application(pymol.desktop) metainfo() metainfo(pymol.appdata.xml) pymol = 1.9.0-1.20180224svn4178.fc29 pymol(riscv-64) = 1.9.0-1.20180224svn4178.fc29 python3.6dist(pymol) = 1.9.0.0 python3dist(pymol) = 1.9.0.0 Requires(interp): /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(postun): /bin/sh Requires: /bin/csh /bin/sh /usr/bin/python3 ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libGL.so.1()(64bit) libGLEW.so.2.0()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libmsgpackc.so.2()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libpython3.6m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.3)(64bit) python(abi) = 3.6 rtld(GNU_HASH) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64 Wrote: /builddir/build/RPMS/pymol-1.9.0-1.20180224svn4178.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.dXwH2i + umask 022 + cd /builddir/build/BUILD + cd pymol-1.9.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/pymol-1.9.0-1.20180224svn4178.fc29.riscv64 + exit 0 Child return code was: 0