Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-caTools.spec'], chrootPath='/var/lib/mock/f33-build-129403-40673/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-caTools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1582502400 Wrote: /builddir/build/SRPMS/R-caTools-1.18.0-1.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-caTools.spec'], chrootPath='/var/lib/mock/f33-build-129403-40673/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-caTools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1582502400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.SQSU8I + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf caTools + /usr/bin/mkdir -p caTools + cd caTools + /usr/bin/gzip -dc /builddir/build/SOURCES/caTools_1.18.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.IT09sJ + umask 022 + cd /builddir/build/BUILD + cd caTools + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.HncnnH + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64 ++ dirname /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64 + cd caTools + mkdir -p /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library caTools * installing *source* package 'caTools' ... ** package 'caTools' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Gif2R.cpp -o Gif2R.o g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c GifTools.cpp -o GifTools.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c caTools_init.c -o caTools_init.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c runfunc.c -o runfunc.o runfunc.c: In function 'sum_exact': runfunc.c:147:17: warning: 'partial[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 147 | *Out = partial[0]; | ~~~~~~~^~~ g++ -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o caTools.so Gif2R.o GifTools.o caTools_init.o runfunc.o -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library/00LOCK-caTools/00new/caTools/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'caTools' finding HTML links ... done ENVI html GIF html LogitBoost html base64 html caTools-internal html caTools-package html colAUC html combs html predict.LogitBoost html runmad html runmean html runminmax html runquantile html runsd html sample.split html sumexact html trapz html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (caTools) + test -d caTools/src + cd caTools/src + rm -f Gif2R.o GifTools.o caTools_init.o runfunc.o caTools.so + rm -f /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.18.0-1.fc33 --unique-debug-suffix -1.18.0-1.fc33.riscv64 --unique-debug-src-base R-caTools-1.18.0-1.fc33.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/caTools explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library/caTools/libs/caTools.so extracting debug info from /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library/caTools/libs/caTools.so original debug info size: 184kB, size after compression: 180kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 183 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.H31HXK + umask 022 + cd /builddir/build/BUILD + cd caTools + /usr/bin/R CMD check caTools * using log directory '/builddir/build/BUILD/caTools/caTools.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: riscv64-redhat-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'caTools/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'caTools' version '1.18.0' * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'caTools' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Unknown packages 'fields', 'spatstat', 'R2HTML', 'pixmap', 'gplots', 'RColorBrewer', 'epitools', 'XML', 'exactRankTests', 'coin', 'ROCR', 'Epi', 'verification', 'Hmisc', 'gtools', 'magic', 'zoo' in Rd xrefs * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING See '/builddir/build/BUILD/caTools/caTools.Rcheck/00check.log' for details. + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-caTools-1.18.0-1.fc33.riscv64 Provides: R(caTools) = 1.18.0 R-caTools = 1.18.0-1.fc33 R-caTools(riscv-64) = 1.18.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(bitops) R-core >= 3.6.0 ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) rtld(GNU_HASH) Suggests: R(MASS) R(rpart) Processing files: R-caTools-debugsource-1.18.0-1.fc33.riscv64 Provides: R-caTools-debugsource = 1.18.0-1.fc33 R-caTools-debugsource(riscv-64) = 1.18.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-caTools-debuginfo-1.18.0-1.fc33.riscv64 Provides: R-caTools-debuginfo = 1.18.0-1.fc33 R-caTools-debuginfo(riscv-64) = 1.18.0-1.fc33 debuginfo(build-id) = a6372a6c3baf84f16ff68fdc4fd348b27d9eade7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-caTools-debugsource(riscv-64) = 1.18.0-1.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64 Wrote: /builddir/build/RPMS/R-caTools-debugsource-1.18.0-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/R-caTools-1.18.0-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/R-caTools-debuginfo-1.18.0-1.fc33.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.KZ1wUJ + umask 022 + cd /builddir/build/BUILD + cd caTools + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0