Mock Version: 2.15 Mock Version: 2.15 Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/lagan.spec'], chrootPath='/var/lib/mock/f41-build-833539-157861/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/lagan.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1721260800 Wrote: /builddir/build/SRPMS/lagan-2.0-42.fc41.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/lagan.spec'], chrootPath='/var/lib/mock/f41-build-833539-157861/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/lagan.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1721260800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.vKUSAu + umask 022 + cd /builddir/build/BUILD/lagan-2.0-build + test -d /builddir/build/BUILD/lagan-2.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/lagan-2.0-build + /usr/bin/rm -rf /builddir/build/BUILD/lagan-2.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/lagan-2.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/lagan-2.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ynTxFI + umask 022 + cd /builddir/build/BUILD/lagan-2.0-build + cd /builddir/build/BUILD/lagan-2.0-build + rm -rf lagan20 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/lagan20.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd lagan20 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (lagan20-chris.patch):' Patch #0 (lagan20-chris.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .chris --fuzz=0 patching file Readmes/README.FIRST patching file Readmes/README.shuffle patching file Readmes/README.chaos patching file Readmes/README.lagan patching file src/utils/scorealign.c patching file src/utils/Glue.cpp patching file src/utils/mrun.pl patching file src/utils/mrunfile.pl patching file src/utils/mrunpairs.pl patching file src/utils/mviz.pl patching file src/mlagan.c patching file src/prolagan.c patching file src/slagan-mfa.pl patching file src/supermap.pl patching file src/xmfa2mfa.pl patching file utils/mrunpairs.pl patching file utils/draft.pl patching file utils/mrunfile.pl patching file utils/mviz.pl patching file utils/mrun.pl patching file slagan.pl patching file lagan.pl patching file rechaos.pl patching file slagan-mfa.pl patching file supermap.pl patching file xmfa2mfa.pl patching file src/glocal/rightinfluence.cpp patching file src/glocal/score.cpp + echo 'Patch #1 (lagan20-gcc10.patch):' Patch #1 (lagan20-gcc10.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .gcc10 --fuzz=0 patching file src/multial.c patching file src/order.c patching file src/utils/scorecontigs.c Hunk #1 succeeded at 258 (offset -1 lines). + echo 'Patch #2 (lagan-c99.patch):' Patch #2 (lagan-c99.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file src/multial.h patching file src/order.c + sed -i 's/^CC .*$/CC = gcc $(RPM_OPT_FLAGS)/; s/^CPP .*$/CPP = g++ $(RPM_OPT_FLAGS)/' Makefile + sed -i 's|getenv ("LAGAN_DIR")|"/usr/lib64/lagan"|g' src/anchors.c src/diagmatrix.c src/fchaos.c src/filebuffer.c src/global.c src/mempage.c src/mlagan.c src/multial.c src/order.c src/prolagan.c src/skiplist.c src/sortlist.c src/thrtrie.c src/translate.c src/utils/bin2bl.c src/utils/bin2mf.c src/utils/cextract.c src/utils/contigorder.c src/utils/cstat.c src/utils/fa2xfa.c src/utils/getbounds.c src/utils/getcontigpos.c src/utils/getlength.c src/utils/getoverlap.c src/utils/overlay.c src/utils/rc.c src/utils/scorealign.c src/utils/scorecontigs.c src/utils/seqmerge.c + sed -i 's|getenv ("LAGAN_DIR")|"/usr/lib64/lagan"|g' src/utils/Glue.cpp src/utils/dotplot.cpp + sed -i 's|$ENV{LAGAN_DIR}|"/usr/lib64/lagan"|g' anal_gloc.pl lagan.pl rechaos.pl slagan-mfa.pl slagan.pl supermap.pl xmfa2mfa.pl src/anal_gloc.pl src/lagan.pl src/rechaos.pl src/slagan-mfa.pl src/slagan.pl src/supermap.pl src/xmfa2mfa.pl utils/cmerge2.pl utils/draft.pl utils/flipchaos.pl utils/mextract.pl utils/mf2bin.pl utils/mpretty.pl utils/mproject.pl utils/mrun.pl utils/mrunfile.pl utils/mrunpairs.pl utils/msplit.pl utils/mviz.pl src/utils/cmerge2.pl src/utils/draft.pl src/utils/mextract.pl src/utils/mf2bin.pl src/utils/mpretty.pl src/utils/mproject.pl src/utils/mrun.pl src/utils/mrunfile.pl src/utils/mrunpairs.pl src/utils/mviz.pl + sed -i 's|$LAGAN_DIR|/usr/lib64/lagan|g' Readmes/README.shuffle src/anchors.c src/diagmatrix.c src/fchaos.c src/filebuffer.c src/global.c src/mempage.c src/mlagan.c src/multial.c src/order.c src/prolagan.c src/skiplist.c src/sortlist.c src/thrtrie.c src/translate.c + sed -i s/getline/GetLine/g src/anchors.c + sed -i 's/^inline /inline __attribute__ ((always_inline)) /' src/fchaos.c + sed -i '//a#include ' src/filebuffer.c + sed -i '//a#include ' src/utils/scorecontigs.c + sed -i '//a#include ' src/utils/overlay.c + sed -i '//a#include ' src/utils/cstat.c + sed -i 's/^int indeces/extern int indeces/' src/thrtrie.h + sed -i '/^int nnodes=0;/aint indeces[256];' src/thrtrie.c + rm prolagan + chmod -x src/glocal/Makefile src/glocal/default.score src/glocal/glocal src/glocal/glocal.cpp src/glocal/glocal.h src/glocal/io.cpp src/glocal/io.h src/glocal/leftinfluence.cpp src/glocal/leftinfluence.h src/glocal/rightinfluence.cpp src/glocal/rightinfluence.cpp.chris src/glocal/rightinfluence.h src/glocal/score.cpp src/glocal/score.cpp.chris src/glocal/score.h src/glocal/structs.h src/glocal/test.score + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.QWA6vu + umask 022 + cd /builddir/build/BUILD/lagan-2.0-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd lagan20 + make -j4 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' 'CXXFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' (cd src; make) make[1]: Entering directory '/builddir/build/BUILD/lagan-2.0-build/lagan20/src' gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../anchors anchors.c skiplist.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../chaos fchaos.c thrtrie.c skiplist.c global.c translate.c filebuffer.c -lm -DCHAOS__FLAG gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../order order.c diagmatrix.c filebuffer.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../mlagan mlagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG anchors.c: In function ‘hptrcomp’: anchors.c:49:7: warning: unused variable ‘jt’ [-Wunused-variable] 49 | int jt = ((hptr*)p2)->isstart; | ^~ anchors.c: In function ‘doOutput’: anchors.c:171:17: warning: unused variable ‘bestscore’ [-Wunused-variable] 171 | int chl=0, i, bestscore=-1; | ^~~~~~~~~ anchors.c:171:14: warning: unused variable ‘i’ [-Wunused-variable] 171 | int chl=0, i, bestscore=-1; | ^ anchors.c:168:7: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 168 | int len; | ^~~ order.c: In function ‘readAncFile’: order.c:238:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 238 | if ((tt->seq1start >= s1start && tt->seq1end <= s1end || s1start == 0 && s1end == 0) && | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ anchors.c: In function ‘GetLine’: order.c:239:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 239 | (tt->seq2start >= s2start && tt->seq2end <= s2end || s2start == 0 && s2end == 0)){ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ anchors.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | fgets(temp, 1024, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~ order.c: In function ‘mkBarrel’: order.c:275:7: warning: unused variable ‘incr’ [-Wunused-variable] 275 | int incr; | ^~~~ order.c: In function ‘getChain’: order.c:487:7: warning: unused variable ‘temp’ [-Wunused-variable] 487 | int temp; | ^~~~ order.c: In function ‘saveNeck’: order.c:562:6: warning: unused variable ‘second’ [-Wunused-variable] 562 | *second = DMgetDiagStart(mydm, neckdiag, &size2, &x2, &y2); | ^~~~~~ order.c:561:9: warning: unused variable ‘first’ [-Wunused-variable] 561 | alel *first = DMgetDiagStart(mydm, neckdiag-1, &size1, &x1, &y1), | ^~~~~ order.c: In function ‘joinAligns’: order.c:587:10: warning: unused variable ‘n’ [-Wunused-variable] 587 | align *n = a->nextalign, *t; | ^ order.c: In function ‘printBinAlign’: order.c:719:23: warning: array subscript has type ‘char’ [-Wchar-subscripts] 719 | left = lets[seq1[s1++]]; | ~~~~^~~~~~ order.c:721:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 721 | right = lets[seq2[s2++]]; | ~~~~^~~~~~ order.c: In function ‘printMFAAlign’: order.c:774:27: warning: unused variable ‘nlets’ [-Wunused-variable] 774 | int nm=0, nga=0, ngb=0, nlets=0; | ^~~~~ order.c:774:7: warning: unused variable ‘nm’ [-Wunused-variable] 774 | int nm=0, nga=0, ngb=0, nlets=0; | ^~ order.c: In function ‘printXMFAAlign’: order.c:806:27: warning: unused variable ‘nlets’ [-Wunused-variable] 806 | int nm=0, nga=0, ngb=0, nlets=0; | ^~~~~ order.c:806:7: warning: unused variable ‘nm’ [-Wunused-variable] 806 | int nm=0, nga=0, ngb=0, nlets=0; | ^~ order.c: In function ‘readfile’: order.c:62:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 62 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ order.c: In function ‘readSubstMatrix’: order.c:146:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 146 | fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order.c:150:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 150 | fscanf (file, "%d", &gapstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order.c:151:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mlagan.c: In function ‘hptrcomp’: mlagan.c:38:7: warning: unused variable ‘jt’ [-Wunused-variable] 38 | int jt = ((hptr*)p2)->isstart; | ^~ mlagan.c: In function ‘readfile’: mlagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] 93 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mlagan.c: In function ‘getAnchsFromFile’: mlagan.c:161:29: warning: unused variable ‘first’ [-Wunused-variable] 161 | hll *myres = 0, *tt = 0, *first = 0; | ^~~~~ mlagan.c: In function ‘generateAnchors’: mlagan.c:213:8: warning: unused variable ‘flip’ [-Wunused-variable] 213 | char flip = 0; | ^~~~ mlagan.c:211:10: warning: unused variable ‘temp’ [-Wunused-variable] 211 | align* temp; | ^~~~ mlagan.c: In function ‘remakeHLL’: mlagan.c:310:10: warning: unused variable ‘bestscore’ [-Wunused-variable] 310 | int i, bestscore=-1; | ^~~~~~~~~ mlagan.c:310:7: warning: unused variable ‘i’ [-Wunused-variable] 310 | int i, bestscore=-1; | ^ mlagan.c:309:20: warning: unused variable ‘t3’ [-Wunused-variable] 309 | hll *temp, *t2, *t3; | ^~ mlagan.c:309:15: warning: unused variable ‘t2’ [-Wunused-variable] 309 | hll *temp, *t2, *t3; | ^~ mlagan.c:307:7: warning: unused variable ‘len’ [-Wunused-variable] 307 | int len; | ^~~ order.c: In function ‘printBinAlign’: order.c:726:1: warning: control reaches end of non-void function [-Wreturn-type] 726 | } | ^ order.c: In function ‘printTextAlign’: order.c:770:1: warning: control reaches end of non-void function [-Wreturn-type] 770 | } | ^ order.c: In function ‘printMFAAlign’: order.c:802:1: warning: control reaches end of non-void function [-Wreturn-type] 802 | } | ^ mlagan.c: In function ‘iterativeImprovement’: mlagan.c:485:10: warning: unused variable ‘readd’ [-Wunused-variable] 485 | align *readd, *old, *new; | ^~~~~ order.c: In function ‘printXMFAAlign’: mlagan.c:483:12: warning: unused variable ‘oldscore’ [-Wunused-variable] 483 | int i=0, oldscore, cutoff; | ^~~~~~~~ order.c:834:1: warning: control reaches end of non-void function [-Wreturn-type] 834 | } | ^ mlagan.c: In function ‘treeToRPN’: mlagan.c:528:16: warning: unused variable ‘j’ [-Wunused-variable] 528 | int i=0; int j, k; | ^ mlagan.c: In function ‘main’: mlagan.c:942:8: warning: unused variable ‘command’ [-Wunused-variable] 942 | char command[256]; | ^~~~~~~ mlagan.c:941:24: warning: unused variable ‘y’ [-Wunused-variable] 941 | int i = 1, j = 1, x, y; | ^ mlagan.c:941:21: warning: unused variable ‘x’ [-Wunused-variable] 941 | int i = 1, j = 1, x, y; | ^ mlagan.c:939:14: warning: unused variable ‘seqfile’ [-Wunused-variable] 939 | FileBuffer seqfile; | ^~~~~~~ mlagan.c: In function ‘readfile’: mlagan.c:79:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ fchaos.c: In function ‘removeDups’: fchaos.c:302:24: warning: unused variable ‘temp’ [-Wunused-variable] 302 | hll *i, *j, *jprev, *temp; | ^~~~ fchaos.c: In function ‘readfile’: mlagan.c: In function ‘treeToRPN’: mlagan.c:565:1: warning: control reaches end of non-void function [-Wreturn-type] 565 | } | ^ fchaos.c:357:25: warning: too many arguments for format [-Wformat-extra-args] 357 | fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c: In function ‘chain’: fchaos.c:401:16: warning: unused variable ‘d2’ [-Wunused-variable] 401 | int i, d1=0, d2=0; | ^~ fchaos.c:401:10: warning: unused variable ‘d1’ [-Wunused-variable] 401 | int i, d1=0, d2=0; | ^~ fchaos.c:401:7: warning: unused variable ‘i’ [-Wunused-variable] 401 | int i, d1=0, d2=0; | ^ fchaos.c: In function ‘findPrev’: fchaos.c:440:7: warning: unused variable ‘doneset’ [-Wunused-variable] 440 | int doneset = 0; | ^~~~~~~ fchaos.c: In function ‘doAlgo’: fchaos.c:543:24: warning: unused variable ‘bestdbaseloc’ [-Wunused-variable] 543 | int bestqueryloc=-1, bestdbaseloc=-1, numhits; | ^~~~~~~~~~~~ fchaos.c:543:7: warning: unused variable ‘bestqueryloc’ [-Wunused-variable] 543 | int bestqueryloc=-1, bestdbaseloc=-1, numhits; | ^~~~~~~~~~~~ fchaos.c:542:9: warning: unused variable ‘bestscore’ [-Wunused-variable] 542 | float bestscore=-1, baseval; | ^~~~~~~~~ fchaos.c: In function ‘main’: fchaos.c:885:7: warning: unused variable ‘i’ [-Wunused-variable] 885 | int i; | ^ fchaos.c: In function ‘saveScore’: fchaos.c:970:7: warning: unused variable ‘temp’ [-Wunused-variable] 970 | int temp; | ^~~~ fchaos.c: In function ‘savenfreeLList’: fchaos.c:1137:9: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 1137 | int i,j; | ^ fchaos.c: In function ‘readfile’: fchaos.c:344:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 344 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ fchaos.c: In function ‘readSubstMatrix’: fchaos.c:622:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 622 | fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ anchors.c: In function ‘findBestChain’: anchors.c:164:10: warning: ‘bestptr’ may be used uninitialized [-Wmaybe-uninitialized] 164 | return (hll*)bestptr->myelem; | ^~~~~~~~~~~~~~~~~~~~~ anchors.c:126:15: note: ‘bestptr’ was declared here 126 | sle* help, *bestptr; | ^~~~~~~ fchaos.c:627:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 627 | fscanf (file, "%d", &gappenstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:628:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 628 | fscanf (file, "%d", &gappenext); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p skiplist.c: In function ‘makeSkLst’: skiplist.c:33:7: warning: unused variable ‘i’ [-Wunused-variable] 33 | int i; | ^ skiplist.c: In function ‘SLinsert’: skiplist.c:100:37: warning: unused variable ‘tbe’ [-Wunused-variable] 100 | sle* prev = SLfind(trgt, index), *tbe; | ^~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../prolagan prolagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG mlagan.c: In function ‘buildTree’: mlagan.c:662:8: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] 662 | if (names[i] != result) | ^ mlagan.c:599:9: note: ‘result’ was declared here 599 | char *result, *temp; | ^~~~~~ prolagan.c: In function ‘hptrcomp’: prolagan.c:41:7: warning: unused variable ‘jt’ [-Wunused-variable] 41 | int jt = ((hptr*)p2)->isstart; | ^~ prolagan.c: In function ‘readfile’: prolagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] 93 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prolagan.c: In function ‘appendAlignProfile’: prolagan.c:163:9: warning: unused variable ‘j’ [-Wunused-variable] 163 | int i,j,k; | ^ prolagan.c: In function ‘readProfile’: prolagan.c:198:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 198 | while ( myseq = FileRead( with_gaps,0,0,VER_MLAGAN )) { | ^~~~~ prolagan.c: In function ‘getAnchsFromFile’: prolagan.c:246:29: warning: unused variable ‘first’ [-Wunused-variable] 246 | hll *myres = 0, *tt = 0, *first = 0; | ^~~~~ prolagan.c: In function ‘generateAnchors’: prolagan.c:298:8: warning: unused variable ‘flip’ [-Wunused-variable] 298 | char flip = 0; | ^~~~ prolagan.c:296:10: warning: unused variable ‘temp’ [-Wunused-variable] 296 | align* temp; | ^~~~ prolagan.c: In function ‘remakeHLL’: prolagan.c:395:10: warning: unused variable ‘bestscore’ [-Wunused-variable] 395 | int i, bestscore=-1; | ^~~~~~~~~ prolagan.c:395:7: warning: unused variable ‘i’ [-Wunused-variable] 395 | int i, bestscore=-1; | ^ prolagan.c:394:20: warning: unused variable ‘t3’ [-Wunused-variable] 394 | hll *temp, *t2, *t3; | ^~ prolagan.c:394:15: warning: unused variable ‘t2’ [-Wunused-variable] 394 | hll *temp, *t2, *t3; | ^~ prolagan.c:392:7: warning: unused variable ‘len’ [-Wunused-variable] 392 | int len; | ^~~ prolagan.c: In function ‘processAnchors’: prolagan.c:539:36: warning: unused variable ‘uni’ [-Wunused-variable] 539 | align *first, *second, *result, *uni; | ^~~ prolagan.c: In function ‘iterativeImprovement’: prolagan.c:587:10: warning: unused variable ‘readd’ [-Wunused-variable] 587 | align *readd, *old, *new; | ^~~~~ prolagan.c:585:12: warning: unused variable ‘oldscore’ [-Wunused-variable] 585 | int i=0, oldscore, cutoff; | ^~~~~~~~ prolagan.c: In function ‘treeToRPN’: prolagan.c:630:16: warning: unused variable ‘j’ [-Wunused-variable] 630 | int i=0; int j, k; | ^ prolagan.c: In function ‘main’: prolagan.c:966:8: warning: unused variable ‘table’ [-Wunused-variable] 966 | hll* table[MAX_SEQ][MAX_SEQ]; | ^~~~~ prolagan.c:960:8: warning: unused variable ‘command’ [-Wunused-variable] 960 | char command[256]; | ^~~~~~~ prolagan.c:954:14: warning: unused variable ‘seqfile’ [-Wunused-variable] 954 | FileBuffer seqfile; | ^~~~~~~ prolagan.c: In function ‘readfile’: prolagan.c:79:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ prolagan.c: In function ‘treeToRPN’: prolagan.c:667:1: warning: control reaches end of non-void function [-Wreturn-type] 667 | } | ^ diagmatrix.c: In function ‘DMsetPtr’: diagmatrix.c:155:8: warning: unused variable ‘res’ [-Wunused-variable] 155 | char res; | ^~~ diagmatrix.c:154:19: warning: unused variable ‘loc’ [-Wunused-variable] 154 | int dn = x+y-1, loc; | ^~~ multial.c: In function ‘getAnchsFromAlign’: multial.c:104:9: warning: unused variable ‘peakfrac’ [-Wunused-variable] 104 | float peakfrac; | ^~~~~~~~ multial.c:103:19: warning: unused variable ‘isfrst’ [-Wunused-variable] 103 | char ingap = 0, isfrst = 1; | ^~~~~~ multial.c:99:30: warning: unused variable ‘peakscore’ [-Wunused-variable] 99 | int currscore=0, oldscore, peakscore; | ^~~~~~~~~ multial.c:99:20: warning: unused variable ‘oldscore’ [-Wunused-variable] 99 | int currscore=0, oldscore, peakscore; | ^~~~~~~~ multial.c: In function ‘unifyAlign’: multial.c:188:28: warning: unused variable ‘tgc’ [-Wunused-variable] 188 | int s1 = 0, s2 = 0, tgs, tgc; | ^~~ multial.c:188:23: warning: unused variable ‘tgs’ [-Wunused-variable] 188 | int s1 = 0, s2 = 0, tgs, tgc; | ^~~ multial.c:187:19: warning: unused variable ‘brcount’ [-Wunused-variable] 187 | int i,j,k, cbc, brcount; | ^~~~~~~ multial.c:187:14: warning: unused variable ‘cbc’ [-Wunused-variable] 187 | int i,j,k, cbc, brcount; | ^~~ multial.c: In function ‘getChain’: multial.c:247:7: warning: unused variable ‘temp’ [-Wunused-variable] 247 | int temp; | ^~~~ multial.c: In function ‘saveNeck’: multial.c:358:6: warning: unused variable ‘second’ [-Wunused-variable] 358 | *second = DMgetDiagStart(mydm, neckdiag, &size2, &x2, &y2); | ^~~~~~ multial.c:357:9: warning: unused variable ‘first’ [-Wunused-variable] 357 | alel *first = DMgetDiagStart(mydm, neckdiag-1, &size1, &x1, &y1), | ^~~~~ multial.c: In function ‘joinAligns’: multial.c:381:10: warning: unused variable ‘n’ [-Wunused-variable] 381 | align *n = a->nextalign, *t; | ^ multial.c: In function ‘openGap’: multial.c:594:25: warning: unused variable ‘i’ [-Wunused-variable] 594 | int alopen, pen, sav, i; | ^ multial.c:594:15: warning: unused variable ‘pen’ [-Wunused-variable] 594 | int alopen, pen, sav, i; | ^~~ multial.c: In function ‘mkBarrel’: multial.c:615:7: warning: unused variable ‘incr’ [-Wunused-variable] 615 | int incr; | ^~~~ multial.c: In function ‘doNW’: multial.c:811:20: warning: variable ‘oldneck’ set but not used [-Wunused-but-set-variable] 811 | int numNecks =0, oldneck =0; | ^~~~~~~ multial.c:808:8: warning: unused variable ‘rh’ [-Wunused-variable] 808 | char rh, ptr=0, isneck; | ^~ multial.c:807:14: warning: unused variable ‘b’ [-Wunused-variable] 807 | align* a, *b; | ^ multial.c:805:11: warning: unused variable ‘prevgap’ [-Wunused-variable] 805 | int tt, prevgap; | ^~~~~~~ multial.c:805:7: warning: unused variable ‘tt’ [-Wunused-variable] 805 | int tt, prevgap; | ^~ multial.c:804:7: warning: unused variable ‘gapend’ [-Wunused-variable] 804 | int gapend[3]; | ^~~~~~ multial.c: In function ‘removeSeqByName’: multial.c:1062:8: warning: variable ‘removed’ set but not used [-Wunused-but-set-variable] 1062 | seq *removed; | ^~~~~~~ multial.c: In function ‘getSeqNum’: multial.c:1073:8: warning: unused variable ‘removed’ [-Wunused-variable] 1073 | seq *removed; | ^~~~~~~ multial.c: In function ‘remapHLLs’: multial.c:1262:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1262 | if (which == 0 && anchs->seq1end - anchs->seq1start < ANCHOR_LENGTH_CUTOFF || | ^ multial.c:1104:43: warning: unused variable ‘olen’ [-Wunused-variable] 1104 | int mybp, i, *searchint, stmybp, mylen, olen, osize; | ^~~~ multial.c: In function ‘hllJoin’: multial.c:1352:10: warning: unused variable ‘j’ [-Wunused-variable] 1352 | int i, j; | ^ multial.c:1352:7: warning: unused variable ‘i’ [-Wunused-variable] 1352 | int i, j; | ^ multial.c: In function ‘minHLL’: multial.c:1368:10: warning: unused variable ‘j’ [-Wunused-variable] 1368 | int i, j; | ^ multial.c: In function ‘mergeHLLs’: multial.c:1408:10: warning: unused variable ‘j’ [-Wunused-variable] 1408 | int i, j, mscore; | ^ multial.c:1408:7: warning: unused variable ‘i’ [-Wunused-variable] 1408 | int i, j, mscore; | ^ multial.c: In function ‘printTextAlign’: multial.c:1466:7: warning: unused variable ‘nlets’ [-Wunused-variable] 1466 | int nlets=0; | ^~~~~ multial.c:1465:13: warning: unused variable ‘s2’ [-Wunused-variable] 1465 | int s1=0, s2=0, c, k, i; | ^~ multial.c:1465:7: warning: unused variable ‘s1’ [-Wunused-variable] 1465 | int s1=0, s2=0, c, k, i; | ^~ multial.c: In function ‘printFASTAAlign’: multial.c:1525:7: warning: unused variable ‘nlets’ [-Wunused-variable] 1525 | int nlets=0; | ^~~~~ multial.c:1524:13: warning: unused variable ‘s2’ [-Wunused-variable] 1524 | int s1=0, s2=0, c, k, i; | ^~ multial.c:1524:7: warning: unused variable ‘s1’ [-Wunused-variable] 1524 | int s1=0, s2=0, c, k, i; | ^~ multial.c: In function ‘printXMFAAlign’: multial.c:1553:7: warning: unused variable ‘nlets’ [-Wunused-variable] 1553 | int nlets=0; | ^~~~~ multial.c:1552:13: warning: unused variable ‘s2’ [-Wunused-variable] 1552 | int s1=0, s2=0, c, k, i; | ^~ multial.c:1552:7: warning: unused variable ‘s1’ [-Wunused-variable] 1552 | int s1=0, s2=0, c, k, i; | ^~ multial.c: At top level: multial.c:581:10: warning: ‘gapcache’ is static but used in inline function ‘endGap2’ which is not static 581 | return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:576:10: warning: ‘gapcache’ is static but used in inline function ‘endGap1’ which is not static 576 | return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | | ^~~~~~~~ multial.c:570:10: warning: ‘gapcache’ is static but used in inline function ‘endGap0’ which is not static 570 | return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:563:10: warning: ‘matchcache’ is static but used in inline function ‘scoreOpp’ which is not static 563 | return matchcache[v(other->cnts[0][ow]) | | ^~~~~~~~~~ multial.c: In function ‘scoreLocal’: multial.c:84:1: warning: control reaches end of non-void function [-Wreturn-type] 84 | } | ^ multial.c: In function ‘readSubstMatrix’: multial.c:478:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 478 | fscanf (file, "%d", &k); | ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:486:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 486 | fscanf (file, "%d", &gapstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c:487:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 487 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c: In function ‘removeSeqByName’: multial.c:1068:1: warning: control reaches end of non-void function [-Wreturn-type] 1068 | } | ^ multial.c: In function ‘printTextAlign’: multial.c:1521:1: warning: control reaches end of non-void function [-Wreturn-type] 1521 | } | ^ multial.c: In function ‘printFASTAAlign’: multial.c:1549:1: warning: control reaches end of non-void function [-Wreturn-type] 1549 | } | ^ multial.c: In function ‘printXMFAAlign’: multial.c:1579:1: warning: control reaches end of non-void function [-Wreturn-type] 1579 | } | ^ fchaos.c: In function ‘doTranslated’: fchaos.c:865:7: warning: ‘temp’ may be used uninitialized [-Wmaybe-uninitialized] 865 | procPairs(currquery, currdbase); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:805:32: note: ‘temp’ was declared here 805 | seq *currquery, *currdbase, *temp; | ^~~~ fchaos.c: In function ‘main’: fchaos.c:955:7: warning: ‘temp’ may be used uninitialized [-Wmaybe-uninitialized] 955 | procPairs(currquery, currdbase); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:882:32: note: ‘temp’ was declared here 882 | seq *currquery, *currdbase, *temp; | ^~~~ thrtrie.c: In function ‘makeAlpha’: thrtrie.c:34:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 34 | indeces[*alpha] = i; | ^~~~~~ thrtrie.c:36:19: warning: array subscript has type ‘char’ [-Wchar-subscripts] 36 | else indeces [*alpha] = i++; | ^~~~~~ thrtrie.c: In function ‘lookup’: thrtrie.c:43:17: warning: array subscript has type ‘char’ [-Wchar-subscripts] 43 | return indeces[c]; | ^ thrtrie.c: In function ‘insertString’: thrtrie.c:175:10: warning: unused variable ‘j’ [-Wunused-variable] 175 | int i, j, wordlen = root->height, letprev, letcurr; | ^ In file included from thrtrie.c:14: mempage.c: In function ‘MPallfree’: mempage.c:48:1: warning: control reaches end of non-void function [-Wreturn-type] 48 | } | ^ multial.c: In function ‘getAnchsFromAlign’: multial.c:104:9: warning: unused variable ‘peakfrac’ [-Wunused-variable] 104 | float peakfrac; | ^~~~~~~~ multial.c:103:19: warning: unused variable ‘isfrst’ [-Wunused-variable] 103 | char ingap = 0, isfrst = 1; | ^~~~~~ multial.c:99:30: warning: unused variable ‘peakscore’ [-Wunused-variable] 99 | int currscore=0, oldscore, peakscore; | ^~~~~~~~~ multial.c:99:20: warning: unused variable ‘oldscore’ [-Wunused-variable] 99 | int currscore=0, oldscore, peakscore; | ^~~~~~~~ multial.c: In function ‘unifyAlign’: multial.c:188:28: warning: unused variable ‘tgc’ [-Wunused-variable] 188 | int s1 = 0, s2 = 0, tgs, tgc; | ^~~ multial.c:188:23: warning: unused variable ‘tgs’ [-Wunused-variable] 188 | int s1 = 0, s2 = 0, tgs, tgc; | ^~~ multial.c:187:19: warning: unused variable ‘brcount’ [-Wunused-variable] 187 | int i,j,k, cbc, brcount; | ^~~~~~~ multial.c:187:14: warning: unused variable ‘cbc’ [-Wunused-variable] 187 | int i,j,k, cbc, brcount; | ^~~ multial.c: In function ‘getChain’: multial.c:247:7: warning: unused variable ‘temp’ [-Wunused-variable] 247 | int temp; | ^~~~ multial.c: In function ‘saveNeck’: multial.c:358:6: warning: unused variable ‘second’ [-Wunused-variable] 358 | *second = DMgetDiagStart(mydm, neckdiag, &size2, &x2, &y2); | ^~~~~~ multial.c:357:9: warning: unused variable ‘first’ [-Wunused-variable] 357 | alel *first = DMgetDiagStart(mydm, neckdiag-1, &size1, &x1, &y1), | ^~~~~ multial.c: In function ‘joinAligns’: multial.c:381:10: warning: unused variable ‘n’ [-Wunused-variable] 381 | align *n = a->nextalign, *t; | ^ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/bin2mf utils/bin2mf.c multial.c: In function ‘openGap’: multial.c:594:25: warning: unused variable ‘i’ [-Wunused-variable] 594 | int alopen, pen, sav, i; | ^ multial.c:594:15: warning: unused variable ‘pen’ [-Wunused-variable] 594 | int alopen, pen, sav, i; | ^~~ multial.c: In function ‘mkBarrel’: multial.c:615:7: warning: unused variable ‘incr’ [-Wunused-variable] 615 | int incr; | ^~~~ multial.c: In function ‘doNW’: multial.c:811:20: warning: variable ‘oldneck’ set but not used [-Wunused-but-set-variable] 811 | int numNecks =0, oldneck =0; | ^~~~~~~ multial.c:808:8: warning: unused variable ‘rh’ [-Wunused-variable] 808 | char rh, ptr=0, isneck; | ^~ multial.c:807:14: warning: unused variable ‘b’ [-Wunused-variable] 807 | align* a, *b; | ^ multial.c:805:11: warning: unused variable ‘prevgap’ [-Wunused-variable] 805 | int tt, prevgap; | ^~~~~~~ multial.c:805:7: warning: unused variable ‘tt’ [-Wunused-variable] 805 | int tt, prevgap; | ^~ multial.c:804:7: warning: unused variable ‘gapend’ [-Wunused-variable] 804 | int gapend[3]; | ^~~~~~ multial.c: In function ‘removeSeqByName’: multial.c:1062:8: warning: variable ‘removed’ set but not used [-Wunused-but-set-variable] 1062 | seq *removed; | ^~~~~~~ multial.c: In function ‘getSeqNum’: multial.c:1073:8: warning: unused variable ‘removed’ [-Wunused-variable] 1073 | seq *removed; | ^~~~~~~ multial.c: In function ‘remapHLLs’: multial.c:1262:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1262 | if (which == 0 && anchs->seq1end - anchs->seq1start < ANCHOR_LENGTH_CUTOFF || | ^ multial.c:1104:43: warning: unused variable ‘olen’ [-Wunused-variable] 1104 | int mybp, i, *searchint, stmybp, mylen, olen, osize; | ^~~~ multial.c: In function ‘hllJoin’: multial.c:1352:10: warning: unused variable ‘j’ [-Wunused-variable] 1352 | int i, j; | ^ multial.c:1352:7: warning: unused variable ‘i’ [-Wunused-variable] 1352 | int i, j; | ^ multial.c: In function ‘minHLL’: multial.c:1368:10: warning: unused variable ‘j’ [-Wunused-variable] 1368 | int i, j; | ^ multial.c: In function ‘mergeHLLs’: multial.c:1408:10: warning: unused variable ‘j’ [-Wunused-variable] 1408 | int i, j, mscore; | ^ multial.c:1408:7: warning: unused variable ‘i’ [-Wunused-variable] 1408 | int i, j, mscore; | ^ multial.c: In function ‘printTextAlign’: multial.c:1466:7: warning: unused variable ‘nlets’ [-Wunused-variable] 1466 | int nlets=0; | ^~~~~ multial.c:1465:13: warning: unused variable ‘s2’ [-Wunused-variable] 1465 | int s1=0, s2=0, c, k, i; | ^~ multial.c:1465:7: warning: unused variable ‘s1’ [-Wunused-variable] 1465 | int s1=0, s2=0, c, k, i; | ^~ multial.c: In function ‘printFASTAAlign’: multial.c:1525:7: warning: unused variable ‘nlets’ [-Wunused-variable] 1525 | int nlets=0; | ^~~~~ multial.c:1524:13: warning: unused variable ‘s2’ [-Wunused-variable] 1524 | int s1=0, s2=0, c, k, i; | ^~ multial.c:1524:7: warning: unused variable ‘s1’ [-Wunused-variable] 1524 | int s1=0, s2=0, c, k, i; | ^~ multial.c: In function ‘printXMFAAlign’: multial.c:1553:7: warning: unused variable ‘nlets’ [-Wunused-variable] 1553 | int nlets=0; | ^~~~~ multial.c:1552:13: warning: unused variable ‘s2’ [-Wunused-variable] 1552 | int s1=0, s2=0, c, k, i; | ^~ multial.c:1552:7: warning: unused variable ‘s1’ [-Wunused-variable] 1552 | int s1=0, s2=0, c, k, i; | ^~ multial.c: At top level: multial.c:581:10: warning: ‘gapcache’ is static but used in inline function ‘endGap2’ which is not static 581 | return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:576:10: warning: ‘gapcache’ is static but used in inline function ‘endGap1’ which is not static 576 | return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | | ^~~~~~~~ multial.c:570:10: warning: ‘gapcache’ is static but used in inline function ‘endGap0’ which is not static 570 | return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:563:10: warning: ‘matchcache’ is static but used in inline function ‘scoreOpp’ which is not static 563 | return matchcache[v(other->cnts[0][ow]) | | ^~~~~~~~~~ multial.c: In function ‘scoreLocal’: multial.c:84:1: warning: control reaches end of non-void function [-Wreturn-type] 84 | } | ^ multial.c: In function ‘readSubstMatrix’: multial.c:478:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 478 | fscanf (file, "%d", &k); | ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:486:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 486 | fscanf (file, "%d", &gapstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c:487:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 487 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c: In function ‘removeSeqByName’: multial.c:1068:1: warning: control reaches end of non-void function [-Wreturn-type] 1068 | } | ^ multial.c: In function ‘printTextAlign’: multial.c:1521:1: warning: control reaches end of non-void function [-Wreturn-type] 1521 | } | ^ multial.c: In function ‘printFASTAAlign’: multial.c:1549:1: warning: control reaches end of non-void function [-Wreturn-type] 1549 | } | ^ multial.c: In function ‘printXMFAAlign’: multial.c:1579:1: warning: control reaches end of non-void function [-Wreturn-type] 1579 | } | ^ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/bin2bl utils/bin2bl.c utils/bin2bl.c: In function ‘main’: utils/bin2bl.c:52:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 52 | if (argv[1][0] == '-') | ^ utils/bin2bl.c:22:7: warning: unused variable ‘width’ [-Wunused-variable] 22 | int width = 60; | ^~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p skiplist.c: In function ‘makeSkLst’: skiplist.c:33:7: warning: unused variable ‘i’ [-Wunused-variable] 33 | int i; | ^ skiplist.c: In function ‘SLinsert’: skiplist.c:100:37: warning: unused variable ‘tbe’ [-Wunused-variable] 100 | sle* prev = SLfind(trgt, index), *tbe; | ^~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/cextract utils/cextract.c global.c: In function ‘ismatch’: global.c:12:17: warning: array subscript has type ‘char’ [-Wchar-subscripts] 12 | return indeces[a] == indeces[b]; | ^ global.c:12:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 12 | return indeces[a] == indeces[b]; | ^ global.c: In function ‘global’: global.c:34:31: warning: unused variable ‘score’ [-Wunused-variable] 34 | int mm = end2 - start2 + 1, score; | ^~~~~ global.c: In function ‘printalign’: global.c:172:1: warning: control reaches end of non-void function [-Wreturn-type] 172 | } | ^ utils/cextract.c: In function ‘getLength’: utils/cextract.c:16:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 16 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/cextract.c: In function ‘readfile’: utils/cextract.c:41:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 41 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/cextract.c:59:8: warning: ‘ch’ may be used uninitialized [-Wmaybe-uninitialized] 59 | if (ch == '>') ungetc (ch, file); | ^ utils/cextract.c:29:22: note: ‘ch’ was declared here 29 | char buffer[1024], ch; | ^~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/cstat utils/cstat.c utils/cstat.c: In function ‘main’: utils/cstat.c:235:7: warning: unused variable ‘i’ [-Wunused-variable] 235 | int i; | ^ utils/cstat.c: In function ‘cntlets’: utils/cstat.c:45:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 45 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ utils/cstat.c: In function ‘readseq’: utils/cstat.c:68:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 68 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ translate.c: In function ‘toPeptide’: translate.c:9:10: warning: unused variable ‘j’ [-Wunused-variable] 9 | int i, j, sum=0, mask = 0; | ^ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/contigorder utils/contigorder.c utils/contigorder.c: In function ‘getFileInfo’: utils/contigorder.c:15:57: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 15 | fprintf (stderr, "contigorder: Error opening file: %s\n"); | ~^ | | | char * utils/contigorder.c:26:25: warning: unknown conversion type character ‘&’ in format [-Wformat=] 26 | fscanf (file, "%&d", &dummy); | ^ utils/contigorder.c:26:23: warning: too many arguments for format [-Wformat-extra-args] 26 | fscanf (file, "%&d", &dummy); | ^~~~~ utils/contigorder.c: In function ‘getScores’: utils/contigorder.c:52:57: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 52 | fprintf (stderr, "contigorder: Error opening file: %s\n"); | ~^ | | | char * utils/contigorder.c: In function ‘solveOrder’: utils/contigorder.c:176:30: warning: unused variable ‘ptr’ [-Wunused-variable] 176 | int **best, *first, *last, ptr, newScore, **scoreOf; | ^~~ utils/contigorder.c: In function ‘getFileInfo’: utils/contigorder.c:19:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fscanf (file, "numContigs = %d\n", numContigs); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:20:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 20 | fscanf (file, "seqLen = %d\n", seqLen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:26:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 26 | fscanf (file, "%&d", &dummy); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c: In function ‘getScores’: utils/contigorder.c:56:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | fscanf (file, "numContigs = %*d\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:57:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fscanf (file, "seqLen = %*d\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:63:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 63 | fscanf (file, "%d", &((*score)[i][j])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/getbounds utils/getbounds.c utils/getbounds.c: In function ‘main’: utils/getbounds.c:32:27: warning: unused variable ‘ext’ [-Wunused-variable] 32 | int S1B, S1E, S2B, S2E, ext, len1, len2; | ^~~ utils/getbounds.c: In function ‘getLength’: utils/getbounds.c:18:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 18 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ diagmatrix.c: In function ‘DMsetPtr’: diagmatrix.c:155:8: warning: unused variable ‘res’ [-Wunused-variable] 155 | char res; | ^~~ diagmatrix.c:154:19: warning: unused variable ‘loc’ [-Wunused-variable] 154 | int dn = x+y-1, loc; | ^~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/getlength utils/getlength.c utils/getlength.c: In function ‘main’: utils/getlength.c:20:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 20 | fgets (buffer, BUF_SIZE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c: In function ‘solveOrder’: utils/contigorder.c:247:44: warning: ‘bestState’ may be used uninitialized [-Wmaybe-uninitialized] 247 | for (i = 0; k && i < numCols; i++) if (bestState & (1 << i)){ | ^~~~~~~~~ utils/contigorder.c:177:22: note: ‘bestState’ was declared here 177 | int bestScore = 0, bestState, bestRange, newBest, addedScore; | ^~~~~~~~~ utils/contigorder.c:249:63: warning: ‘bestRange’ may be used uninitialized [-Wmaybe-uninitialized] 249 | for (j = 0; k && j < numRanges; j++) if (last[j] < first[bestRange]){ | ^ utils/contigorder.c:177:33: note: ‘bestRange’ was declared here 177 | int bestScore = 0, bestState, bestRange, newBest, addedScore; | ^~~~~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/getoverlap utils/getoverlap.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/rc utils/rc.c utils/rc.c: In function ‘main’: utils/rc.c:39:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 39 | fgets(temp, 255, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/seqmerge utils/seqmerge.c skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p skiplist.c: In function ‘makeSkLst’: skiplist.c:33:7: warning: unused variable ‘i’ [-Wunused-variable] 33 | int i; | ^ skiplist.c: In function ‘SLinsert’: skiplist.c:100:37: warning: unused variable ‘tbe’ [-Wunused-variable] 100 | sle* prev = SLfind(trgt, index), *tbe; | ^~~ utils/seqmerge.c: In function ‘main’: utils/seqmerge.c:33:15: warning: suggest parentheses around comparison in operand of ‘^’ [-Wparentheses] 33 | if (written ^ 60 != 0) printf ("\n"); | ^ utils/seqmerge.c:19:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/scorealign utils/scorealign.c -lm gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/scorecontigs utils/scorecontigs.c -lm utils/scorealign.c: In function ‘getSequence’: utils/scorealign.c:262:8: warning: variable ‘prevch’ set but not used [-Wunused-but-set-variable] 262 | char prevch = '~'; | ^~~~~~ utils/scorealign.c: In function ‘getSequences’: utils/scorealign.c:322:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 322 | while (newseq = getSequence (file, &si, &ss, &se, &sd, &sc)){ | ^~~~~~ utils/scorealign.c:310:7: warning: unused variable ‘i’ [-Wunused-variable] 310 | int i, si, ss, se; | ^ utils/scorealign.c: In function ‘processSequences’: utils/scorealign.c:353:10: warning: unused variable ‘j’ [-Wunused-variable] 353 | int i, j; | ^ utils/scorealign.c: In function ‘getSequence’: utils/scorealign.c:266:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 266 | fgets (line, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c: In function ‘readScoreMatrix’: utils/scorealign.c:411:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 411 | fgets (line, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:419:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 419 | fscanf (file, "%1s", &(line[0])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:421:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 421 | fscanf (file, "%d", &k); | ^~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:426:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 426 | fscanf (file, "%d%d", &gapopen, &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diagmatrix.c: In function ‘DMsetPtr’: diagmatrix.c:155:8: warning: unused variable ‘res’ [-Wunused-variable] 155 | char res; | ^~~ diagmatrix.c:154:19: warning: unused variable ‘loc’ [-Wunused-variable] 154 | int dn = x+y-1, loc; | ^~~ utils/scorecontigs.c: In function ‘analyze’: utils/scorecontigs.c:345:13: warning: unused variable ‘k’ [-Wunused-variable] 345 | int i, j, k; | ^ utils/scorecontigs.c: In function ‘main’: utils/scorecontigs.c:385:38: warning: format ‘%s’ expects argument of type ‘char *’, but argument 6 has type ‘char (*)[1024]’ [-Wformat=] 385 | if (fscanf (filelist, "%d %d %d %s\n", &(num[numseqs]), &(offs1[numseqs]), &(offs2[numseqs]), &(contignames[numseqs])) == 4){ | ~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | char * char (*)[1024] utils/scorecontigs.c: In function ‘cntlets’: utils/scorecontigs.c:56:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | fgets(temp, 1024, input); | ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorecontigs.c: In function ‘readseq’: utils/scorecontigs.c:82:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fgets (temp, 1024, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~ utils/scorecontigs.c: In function ‘getranges’: utils/scorecontigs.c:188:31: warning: ‘*’ may be used uninitialized [-Wmaybe-uninitialized] 188 | states[len - 1] = (scores[0][len - 1] > scores[1][len - 1]) ? 0 : 1; | ~~~~~~~~~^~~~~~~~~ utils/scorecontigs.c:188:52: warning: ‘*’ may be used uninitialized [-Wmaybe-uninitialized] 188 | states[len - 1] = (scores[0][len - 1] > scores[1][len - 1]) ? 0 : 1; | ~~~~~~~~~^~~~~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/getcontigpos utils/getcontigpos.c utils/getcontigpos.c: In function ‘print’: utils/getcontigpos.c:66:46: warning: unused variable ‘j’ [-Wunused-variable] 66 | int i = 0, pos = 0, pos2 = 0, written = 0, j = 0; | ^ utils/getcontigpos.c:66:33: warning: unused variable ‘written’ [-Wunused-variable] 66 | int i = 0, pos = 0, pos2 = 0, written = 0, j = 0; | ^~~~~~~ utils/getcontigpos.c: In function ‘getLength’: utils/getcontigpos.c:16:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 16 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/getcontigpos.c: In function ‘readfile’: utils/getcontigpos.c:41:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 41 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/getcontigpos.c:59:8: warning: ‘ch’ may be used uninitialized [-Wmaybe-uninitialized] 59 | if (ch == '>') ungetc (ch, file); | ^ utils/getcontigpos.c:29:22: note: ‘ch’ was declared here 29 | char buffer[1024], ch; | ^~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p skiplist.c: In function ‘makeSkLst’: skiplist.c:33:7: warning: unused variable ‘i’ [-Wunused-variable] 33 | int i; | ^ skiplist.c: In function ‘SLinsert’: skiplist.c:100:37: warning: unused variable ‘tbe’ [-Wunused-variable] 100 | sle* prev = SLfind(trgt, index), *tbe; | ^~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/fa2xfa utils/fa2xfa.c g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/Glue utils/Glue.cpp utils/fa2xfa.c: In function ‘print’: utils/fa2xfa.c:81:36: warning: unused variable ‘j’ [-Wunused-variable] 81 | int i = 0, pos = 0, written = 0, j = 0; | ^ utils/fa2xfa.c:81:14: warning: unused variable ‘pos’ [-Wunused-variable] 81 | int i = 0, pos = 0, written = 0, j = 0; | ^~~ utils/fa2xfa.c: In function ‘getLength’: utils/fa2xfa.c:30:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 30 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/fa2xfa.c: In function ‘readfile’: utils/fa2xfa.c:55:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/fa2xfa.c:74:8: warning: ‘ch’ may be used uninitialized [-Wmaybe-uninitialized] 74 | if (ch == '>') ungetc (ch, file); | ^ utils/fa2xfa.c:43:22: note: ‘ch’ was declared here 43 | char buffer[1024], ch; | ^~ g++ -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/dotplot utils/dotplot.cpp utils/dotplot.cpp: In function ‘int main(int, char**)’: utils/dotplot.cpp:6:27: warning: variable ‘pa’ set but not used [-Wunused-but-set-variable] 6 | int s1b, s1e, s2b, s2e, pa, pb, maxa = 0, maxb = 0; | ^~ utils/dotplot.cpp:6:31: warning: variable ‘pb’ set but not used [-Wunused-but-set-variable] 6 | int s1b, s1e, s2b, s2e, pa, pb, maxa = 0, maxb = 0; | ^~ utils/dotplot.cpp:37:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 37 | fgets (buffer, 105, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~ utils/dotplot.cpp:74:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 74 | fgets (buffer, 105, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~ utils/dotplot.cpp:97:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets (buffer, 105, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -o ../utils/overlay utils/overlay.c utils/overlay.c: In function ‘read_align’: utils/overlay.c:102:30: warning: unused variable ‘tt’ [-Wunused-variable] 102 | char currchar, checkchar, *tt; | ^~ utils/overlay.c: In function ‘read_sequences’: utils/overlay.c:177:19: warning: unused variable ‘breaker’ [-Wunused-variable] 177 | int i, j, kmer, breaker; | ^~~~~~~ utils/overlay.c:177:13: warning: unused variable ‘kmer’ [-Wunused-variable] 177 | int i, j, kmer, breaker; | ^~~~ utils/overlay.c:177:10: warning: unused variable ‘j’ [-Wunused-variable] 177 | int i, j, kmer, breaker; | ^ utils/overlay.c: In function ‘main’: utils/overlay.c:233:16: warning: unused variable ‘test’ [-Wunused-variable] 233 | float ttree, test; | ^~~~ utils/overlay.c:233:9: warning: unused variable ‘ttree’ [-Wunused-variable] 233 | float ttree, test; | ^~~~~ utils/overlay.c:232:7: warning: unused variable ‘moved’ [-Wunused-variable] 232 | int moved, i; | ^~~~~ utils/overlay.c:231:8: warning: unused variable ‘string_tree’ [-Wunused-variable] 231 | char string_tree[16537]; //noone will ever need more :))) | ^~~~~~~~~~~ utils/overlay.c: In function ‘read_align’: utils/overlay.c:110:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 110 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ utils/overlay.c:135:5: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation] 135 | strncpy(allseqs[target]->seqname, temp, strlen(temp)+1); | ^ utils/overlay.c:135:45: note: length computed here 135 | strncpy(allseqs[target]->seqname, temp, strlen(temp)+1); | ^~~~~~~~~~~~ utils/Glue.cpp: In function ‘void readScoreMatrix(char*)’: utils/Glue.cpp:33:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 33 | lagan_dir = "/usr/lib64/lagan"; | ^~~~~~~~~~~~~~~~~~ utils/Glue.cpp: In function ‘void calculateScoreMatrix(int)’: utils/Glue.cpp:60:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 60 | char *alpha = "ATCG"; | ^~~~~~ utils/Glue.cpp:11:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 11 | #define NUCLEOTIDE_MATRIX_FILE "nucmatrix.txt" | ^~~~~~~~~~~~~~~ utils/Glue.cpp:68:22: note: in expansion of macro ‘NUCLEOTIDE_MATRIX_FILE’ 68 | readScoreMatrix (NUCLEOTIDE_MATRIX_FILE); | ^~~~~~~~~~~~~~~~~~~~~~ utils/Glue.cpp: In function ‘int countLets(SafeVector&)’: utils/Glue.cpp:228:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 228 | if (data[i] >= 'A' && data[i] <= 'Z' || data[i] >= 'a' && data[i] <= 'z') utils/Glue.cpp: In function ‘int main(int, char**)’: utils/Glue.cpp:372:19: warning: variable ‘end1’ set but not used [-Wunused-but-set-variable] 372 | int begin1 = 1, end1 = 1; | ^~~~ utils/Glue.cpp: In function ‘void readScoreMatrix(char*)’: utils/Glue.cpp:40:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 40 | fgets (line, 1024, file); | ~~~~~~^~~~~~~~~~~~~~~~~~ utils/Glue.cpp:48:12: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 48 | fscanf (file, "%1s", &(line[0])); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ utils/Glue.cpp:50:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 50 | fscanf (file, "%d", &k); | ~~~~~~~^~~~~~~~~~~~~~~~ utils/Glue.cpp:55:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fscanf (file, "%d%d", &gapopen, &gapcont); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (cd glocal; make) make[2]: Entering directory '/builddir/build/BUILD/lagan-2.0-build/lagan20/src/glocal' g++ -Wno-deprecated -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I./ -c glocal.cpp g++ -Wno-deprecated -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I./ -c io.cpp g++ -Wno-deprecated -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I./ -c rightinfluence.cpp g++ -Wno-deprecated -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I./ -c leftinfluence.cpp In file included from ./rightinfluence.h:4, from rightinfluence.cpp:1: rightinfluence.cpp: In function ‘void initRI(RI*, long long int)’: ./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses] 30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS | ^ rightinfluence.cpp:9:29: note: in expansion of macro ‘RELPOSSHIFT’ 9 | if (((scoreIndex >> RELPOSSHIFT) & 1) == LEFT) { | ^~~~~~~~~~~ rightinfluence.cpp: In function ‘long long int RICommitEndPoint(RI*, Fragment*)’: ./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘<<’ [-Wparentheses] 30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS | ^ rightinfluence.cpp:119:85: note: in expansion of macro ‘RELPOSSHIFT’ 119 | int possibleCase = NEGATIVE << DOWNSTRANDSHIFT | NEGATIVE <>’ [-Wparentheses] 30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS | ^ leftinfluence.cpp:135:29: note: in expansion of macro ‘RELPOSSHIFT’ 135 | if (((scoreIndex >> RELPOSSHIFT) & 1) == LEFT) { | ^~~~~~~~~~~ leftinfluence.cpp: In function ‘void printState(LI*)’: leftinfluence.cpp:619:23: warning: variable ‘colCount’ set but not used [-Wunused-but-set-variable] 619 | long long int colCount, diagCount, ownerCount; | ^~~~~~~~ leftinfluence.cpp:619:33: warning: variable ‘diagCount’ set but not used [-Wunused-but-set-variable] 619 | long long int colCount, diagCount, ownerCount; | ^~~~~~~~~ leftinfluence.cpp:619:44: warning: variable ‘ownerCount’ set but not used [-Wunused-but-set-variable] 619 | long long int colCount, diagCount, ownerCount; | ^~~~~~~~~~ In file included from ./score.h:4, from glocal.cpp:1: glocal.cpp: In function ‘int main(int, char**)’: ./structs.h:31:50: warning: suggest parentheses around ‘+’ inside ‘<<’ [-Wparentheses] 31 | #define TOTALSHIFT UPSTRANDBITS + DOWNSTRANDBITS + RELPOSBITS | ^ glocal.cpp:64:23: note: in expansion of macro ‘TOTALSHIFT’ 64 | for (i=0;i<1<>’ [-Wparentheses] 30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS | ^ score.cpp:143:33: note: in expansion of macro ‘RELPOSSHIFT’ 143 | if (ret_case >> RELPOSSHIFT != UNRELATED) { | ^~~~~~~~~~~ score.cpp: In function ‘float fragmentSetScore(Fragment*, Fragment*, LI*, RI*, long long int)’: ./structs.h:30:34: warning: suggest parentheses around ‘+’ inside ‘<<’ [-Wparentheses] 30 | #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS | ^ score.cpp:185:134: note: in expansion of macro ‘RELPOSSHIFT’ 185 | tempScore = scoreAll(owner,current, current->strand << DOWNSTRANDSHIFT | owner->strand <= 5.5.0 perl(Cwd) perl(File::Basename) perl(File::Copy) perl(File::Path) perl(Getopt::Long) perl(IO::Handle) perl(IPC::Open2) perl(constant) perl(strict) perl(warnings) rtld(GNU_HASH) Processing files: lagan-debugsource-2.0-42.fc41.riscv64 Provides: lagan-debugsource = 2.0-42.fc41 lagan-debugsource(riscv-64) = 2.0-42.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: lagan-debuginfo-2.0-42.fc41.riscv64 Provides: debuginfo(build-id) = 0004177ff4e3de50bb27655294a692d5f7b65376 debuginfo(build-id) = 085ac7ab8210357122a972fd13fff0face5bfc0f debuginfo(build-id) = 0cde8810d394b1af4c59cf65a43121499325da98 debuginfo(build-id) = 1ab4a2724075f8e6a70eb0125a41cba723c58b57 debuginfo(build-id) = 535d2fcd3cf2107e5f0b9ba97e7b1ab806ef895a debuginfo(build-id) = 70470ce7ac853ee88133ed9f9e9fb1347340046c debuginfo(build-id) = 798262713d9b1bd1bee1b7abc5f39e4c9b5f3578 debuginfo(build-id) = 7ea9681fda5fce128d58adfa5dc056d07d637ed9 debuginfo(build-id) = 8c3d2a7d98b9d9ae9c8513b563a788546dc69880 debuginfo(build-id) = 8c42d175227f61df7c2438b0348049022aff525c debuginfo(build-id) = 8f0f52f3c4629bc7b0fbbe581e6aae66c801d45d debuginfo(build-id) = 9512f3d21775bb5716c98498edafffc595fd4b46 debuginfo(build-id) = 981a95b0f996ba43e8514eb364fca90f19d43fe8 debuginfo(build-id) = a9c687d863b27af457747d0ef44f6995d3eb83fc debuginfo(build-id) = cdf624db71bce5c5d732c2b38879e97f3231bc83 debuginfo(build-id) = d29a10d7effac284ceafceb71b7219da78edf0f6 debuginfo(build-id) = d43ddf78379698b11919642ee63aeddbd6bc3c82 debuginfo(build-id) = d8b64cdee457a2bd0ca969986a862ecd0f05e8bb debuginfo(build-id) = de46313b6ac05009e80ebd581dd4028e2b884fd7 debuginfo(build-id) = df2f738c0bf56dcd388d7f26e0fa8b65f0966c84 debuginfo(build-id) = eab1949062138e5c2c49f10fb19ce4e8f1cec77b debuginfo(build-id) = f412ee22cbeef56d8d19c569855859361ff01dde debuginfo(build-id) = f656f34edefa1cdf87e0f38a0eda76cbebffba49 lagan-debuginfo = 2.0-42.fc41 lagan-debuginfo(riscv-64) = 2.0-42.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: lagan-debugsource(riscv-64) = 2.0-42.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/lagan-2.0-build/BUILDROOT Wrote: /builddir/build/RPMS/lagan-debugsource-2.0-42.fc41.riscv64.rpm Wrote: /builddir/build/RPMS/lagan-2.0-42.fc41.riscv64.rpm Wrote: /builddir/build/RPMS/lagan-debuginfo-2.0-42.fc41.riscv64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.RxvXzH + umask 022 + cd /builddir/build/BUILD/lagan-2.0-build + test -d /builddir/build/BUILD/lagan-2.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/lagan-2.0-build + rm -rf /builddir/build/BUILD/lagan-2.0-build + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0