Mock Version: 1.4.14 Mock Version: 1.4.14 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-preprocessCore.spec'], chrootPath='/var/lib/mock/f31-build-99327-33137/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-preprocessCore.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1565568000 Wrote: /builddir/build/SRPMS/R-preprocessCore-1.42.0-5.fc31.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-preprocessCore.spec'], chrootPath='/var/lib/mock/f31-build-99327-33137/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-preprocessCore.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1565568000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.tOjL9o + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf preprocessCore + /usr/bin/mkdir -p preprocessCore + cd preprocessCore + /usr/bin/gzip -dc /builddir/build/SOURCES/preprocessCore_1.42.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.hqiIkm + umask 022 + cd /builddir/build/BUILD + cd preprocessCore + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.6Yh8Jo + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64 + cd preprocessCore + mkdir -p /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64/usr/lib64/R/library + R CMD INSTALL preprocessCore -l /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64/usr/lib64/R/library BUILDSTDERR: * installing *source* package 'preprocessCore' ... BUILDSTDERR: ** using staged installation BUILDSTDERR: ** libs checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for library containing pthread_create... -lpthread checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking if PTHREAD_STACK_MIN is defined... yes configure: Enabling threading for preprocessCore configure: creating ./config.status config.status: creating src/Makevars gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_colSummarize.c -o R_colSummarize.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_plmd_interfaces.c -o R_plmd_interfaces.o BUILDSTDERR: gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOUR_subColSummarize.c: In function 'R_subColSummarize_avg_log': BUILDSTDERR: R_subColSummarize.c:105:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 105 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subColSummarize.c:103:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 103 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subColSummarize.c:99:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 99 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subColSummarize.c:97:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 97 | double *results, *buffer; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subColSummarize.c: In function 'R_subColSummarize_log_avg': BUILDSTDERR: R_subColSummarize.c:273:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 273 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subColSummarize.c:271:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 271 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subColSummarize.c:267:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 267 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subColSummarize.c:265:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 265 | double *results, *buffer; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subColSummarize.c: In function 'R_subColSummarize_avg': BUILDSTDERR: R_subColSummarize.c:444:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 444 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subColSummarize.c:442:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 442 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subColSummarize.c:438:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 438 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subColSummarize.c:436:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 436 | double *results, *buffer; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subColSummarize.c: In function 'R_subColSummarize_biweight_log': BUILDSTDERR: R_subColSummarize.c:616:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 616 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subColSummarize.c:614:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 614 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subColSummarize.c:610:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 610 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subColSummarize.c:608:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 608 | double *results, *buffer; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subColSummarize.c: In function 'R_subColSummarize_biweight': BUILDSTDERR: R_subColSummarize.c:787:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 787 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subColSummarize.c:785:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 785 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subColSummarize.c:781:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 781 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subColSummarize.c:779:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 779 | double *results, *buffer; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subColSummarize.c: In function 'R_subColSummarize_median_log': BUILDSTDERR: R_subColSummarize.c:959:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 959 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subColSummarize.c:957:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 957 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subColSummarize.c:953:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 953 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subColSummarize.c:951:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 951 | double *results, *buffer; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subColSummarize.c: In function 'R_subColSummarize_log_median': BUILDSTDERR: R_subColSummarize.c:1129:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 1129 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subColSummarize.c:1127:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 1127 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subColSummarize.c:1123:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 1123 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subColSummarize.c:1121:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 1121 | double *results, *buffer; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subColSummarize.c: In function 'R_subColSummarize_median': BUILDSTDERR: R_subColSummarize.c:1298:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 1298 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subColSummarize.c:1296:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 1296 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subColSummarize.c:1292:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 1292 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subColSummarize.c:1290:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 1290 | double *results, *buffer; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subColSummarize.c: In function 'R_subColSummarize_medianpolish_log': BUILDSTDERR: R_subColSummarize.c:1472:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 1472 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subColSummarize.c:1470:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 1470 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subColSummarize.c:1466:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 1466 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subColSummarize.c:1464:30: warning: variable 'buffer2' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 1464 | double *results, *buffer, *buffer2; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: R_subColSummarize.c:1464:21: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 1464 | double *results, *buffer, *buffer2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subColSummarize.c: In function 'R_subColSummarize_medianpolish': BUILDSTDERR: R_subColSummarize.c:1647:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 1647 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subColSummarize.c:1645:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 1645 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subColSummarize.c:1641:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 1641 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subColSummarize.c:1639:30: warning: unused variable 'buffer2' [-Wunused-variable] BUILDSTDERR: 1639 | double *results, *buffer, *buffer2; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: R_subColSummarize.c:1639:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 1639 | double *results, *buffer, *buffer2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: At top level: BUILDSTDERR: R_subColSummarize.c:1603:14: warning: 'subColSummarize_medianpolish_group' defined but not used [-Wunused-function] BUILDSTDERR: 1603 | static void *subColSummarize_medianpolish_group(void *data){ BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c: In function 'sub_rcModelSummarize_medianpolish_group': BUILDSTDERR: R_subrcModel_interfaces.c:80:11: warning: unused variable 'se' [-Wunused-variable] BUILDSTDERR: 80 | double *se; BUILDSTDERR: | ^~ BUILDSTDERR: R_subrcModel_interfaces.c:79:11: warning: unused variable 'weights' [-Wunused-variable] BUILDSTDERR: 79 | double *weights; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:64:20: warning: unused variable 'buffer2' [-Wunused-variable] BUILDSTDERR: 64 | double *buffer, *buffer2; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:64:11: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 64 | double *buffer, *buffer2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c: In function 'R_sub_rcModelSummarize_medianpolish': BUILDSTDERR: R_subrcModel_interfaces.c:162:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 162 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subrcModel_interfaces.c:160:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 160 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:156:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 156 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:154:30: warning: unused variable 'buffer2' [-Wunused-variable] BUILDSTDERR: 154 | double *results, *buffer, *buffer2; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:154:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 154 | double *results, *buffer, *buffer2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:154:11: warning: unused variable 'results' [-Wunused-variable] BUILDSTDERR: 154 | double *results, *buffer, *buffer2; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c: In function 'sub_rcModelSummarize_plm_group': BUILDSTDERR: R_subrcModel_interfaces.c:382:10: warning: unused variable 'scale' [-Wunused-variable] BUILDSTDERR: 382 | double scale=-1.0; BUILDSTDERR: | ^~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:361:20: warning: unused variable 'buffer2' [-Wunused-variable] BUILDSTDERR: 361 | double *buffer, *buffer2; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:361:11: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 361 | double *buffer, *buffer2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c: In function 'R_sub_rcModelSummarize_plm': BUILDSTDERR: R_subrcModel_interfaces.c:477:9: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 477 | int i,j; BUILDSTDERR: | ^ BUILDSTDERR: R_subrcModel_interfaces.c:475:7: warning: unused variable 'ncur_rows' [-Wunused-variable] BUILDSTDERR: 475 | int ncur_rows; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:471:8: warning: unused variable 'cur_rows' [-Wunused-variable] BUILDSTDERR: 471 | int *cur_rows; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:469:30: warning: unused variable 'buffer2' [-Wunused-variable] BUILDSTDERR: 469 | double *results, *buffer, *buffer2; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:469:21: warning: unused variable 'buffer' [-Wunused-variable] BUILDSTDERR: 469 | double *results, *buffer, *buffer2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: R_subrcModel_interfaces.c:469:11: warning: unused variable 'results' [-Wunused-variable] BUILDSTDERR: 469 | double *results, *buffer, *buffer2; BUILDSTDERR: | ^~~~~~~ RCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_plmr_interfaces.c -o R_plmr_interfaces.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_rlm_interfaces.c -o R_rlm_interfaces.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_subColSummarize.c -o R_subColSummarize.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_subrcModel_interfaces.c -o R_subrcModel_interfaces.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c avg.c -o avg.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c avg_log.c -o avg_log.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c biweight.c -o biweight.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init_package.c -o init_package.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lm.c -o lm.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c log_avg.c -o log_avg.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c log_median.c -o log_median.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c matrix_functions.c -o matrix_functions.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c median.c -o median.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c median_log.c -o median_log.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c medianpolish.c -o medianpolish.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plmd.c -o plmd.o BUILDSTDERR: gcc -I"/usr/include/R" -DNDEBUG -I/usr/locplmr.c:279:13: warning: 'XTWX_R_inv' defined but not used [-Wunused-function] BUILDSTDERR: 279 | static void XTWX_R_inv(int *rows, int *cols, double *xtwx){ BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: plmr.c:152:13: warning: 'XTWX_R' defined but not used [-Wunused-function] BUILDSTDERR: 152 | static void XTWX_R(int *rows, int *cols, double *out_weights, double *xtwx){ BUILDSTDERR: | ^~~~~~ BUILDSTDERR: plmr.c:82:13: warning: 'XTWY_R' defined but not used [-Wunused-function] BUILDSTDERR: 82 | static void XTWY_R(int *rows, int *cols, double *out_weights, double *y,double *xtwy){ BUILDSTDERR: | ^~~~~~ BUILDSTDERR: qnorm.c: In function 'qnorm_c_determine_target_l': BUILDSTDERR: qnorm.c:1887:7: warning: unused variable 'non_na' [-Wunused-variable] BUILDSTDERR: 1887 | int non_na; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: qnorm.c:1882:12: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 1882 | size_t i,j,row_mean_ind; BUILDSTDERR: | ^ BUILDSTDERR: qnorm.c: In function 'qnorm_c_determine_target_via_subset_l': BUILDSTDERR: qnorm.c:2481:7: warning: unused variable 'non_na' [-Wunused-variable] BUILDSTDERR: 2481 | int non_na; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: qnorm.c:2476:12: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 2476 | size_t i,j,row_mean_ind; BUILDSTDERR: | ^ BUILDSTDERR: qnorm.c: In function 'using_target_via_subset_part1': BUILDSTDERR: qnorm.c:2692:14: warning: variable 'ind' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 2692 | size_t i,j,ind,target_ind; BUILDSTDERR: | ^~~ BUILDSTDERR: qnorm.c: In function 'using_target_via_subset_part2': BUILDSTDERR: qnorm.c:2791:11: warning: unused variable 'datvec' [-Wunused-variable] BUILDSTDERR: 2791 | double *datvec; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: qnorm.c:2790:11: warning: unused variable 'sample_percentiles' [-Wunused-variable] BUILDSTDERR: 2790 | double *sample_percentiles; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: qnorm.c: In function 'using_target_via_subset': BUILDSTDERR: qnorm.c:2940:11: warning: unused variable 'datvec' [-Wunused-variable] BUILDSTDERR: 2940 | double *datvec; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: qnorm.c:2939:11: warning: unused variable 'sample_percentiles' [-Wunused-variable] BUILDSTDERR: 2939 | double *sample_percentiles; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~ BUILDSTDERR: qnorm.c:2935:7: warning: unused variable 'non_na' [-Wunused-variable] BUILDSTDERR: 2935 | int non_na = 0; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: qnorm.c:2934:7: warning: unused variable 'targetnon_na' [-Wunused-variable] BUILDSTDERR: 2934 | int targetnon_na = targetrows; BUILDSTDERR: | ^~~~~~~~~~~~ BUILDSTDERR: qnorm.c:2932:28: warning: unused variable 'target_ind_double_floor' [-Wunused-variable] BUILDSTDERR: 2932 | double target_ind_double,target_ind_double_floor; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: qnorm.c:2932:10: warning: unused variable 'target_ind_double' [-Wunused-variable] BUILDSTDERR: 2932 | double target_ind_double,target_ind_double_floor; BUILDSTDERR: | ^~~~~~~~~~~~~~~~~ BUILDSTDERR: qnorm.c:2931:10: warning: unused variable 'samplepercentile' [-Wunused-variable] BUILDSTDERR: 2931 | double samplepercentile; BUILDSTDERR: | ^~~~~~~~~~~~~~~~ BUILDSTDERR: qnorm.c:2930:11: warning: unused variable 'ranks' [-Wunused-variable] BUILDSTDERR: 2930 | double *ranks = (double *)Calloc((rows),double); BUILDSTDERR: | ^~~~~ BUILDSTDERR: qnorm.c:2928:11: warning: unused variable 'row_mean' [-Wunused-variable] BUILDSTDERR: 2928 | double *row_mean = target; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: qnorm.c:2926:14: warning: unused variable 'dimat' [-Wunused-variable] BUILDSTDERR: 2926 | dataitem **dimat; BUILDSTDERR: | ^~~~~ BUILDSTDERR: qnorm.c:2924:18: warning: unused variable 'target_ind' [-Wunused-variable] BUILDSTDERR: 2924 | size_t i,j,ind,target_ind; BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: qnorm.c:2924:14: warning: unused variable 'ind' [-Wunused-variable] BUILDSTDERR: 2924 | size_t i,j,ind,target_ind; BUILDSTDERR: | ^~~ BUILDSTDERR: qnorm.c:2924:12: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 2924 | size_t i,j,ind,target_ind; BUILDSTDERR: | ^ BUILDSTDERR: qnorm.c: In function 'R_qnorm_using_target': BUILDSTDERR: qnorm.c:2087:3: warning: 'target_rows' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 2087 | qnorm_c_using_target_l(Xptr, rows, cols ,targetptr, target_rows); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: qnorm.c: In function 'R_qnorm_using_target_via_subset': BUILDSTDERR: qnorm.c:3205:3: warning: 'target_rows' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 3205 | qnorm_c_using_target_via_subset_l(Xptr, rows, cols, subsetptr, targetptr, target_rows); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ al/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plmr.c -o plmr.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c psi_fns.c -o psi_fns.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnorm.c -o qnorm.o BUILDSTDERR: gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpmrlm_anova.c: In function 'rlm_fit_anova_given_probe_effects_engine': BUILDSTDERR: rlm_anova.c:1235:10: warning: unused variable 'endprobe' [-Wunused-variable] BUILDSTDERR: 1235 | double endprobe; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: rlm_anova.c: In function 'rlm_compute_se_anova_given_probe_effects': BUILDSTDERR: rlm_anova.c:1426:19: warning: unused variable 'varderivpsi' [-Wunused-variable] BUILDSTDERR: 1426 | double vs=0.0,m,varderivpsi=0.0; BUILDSTDERR: | ^~~~~~~~~~~ BUILDSTDERR: rlm_anova.c:1426:17: warning: unused variable 'm' [-Wunused-variable] BUILDSTDERR: 1426 | double vs=0.0,m,varderivpsi=0.0; BUILDSTDERR: | ^ BUILDSTDERR: rlm_anova.c:1426:10: warning: unused variable 'vs' [-Wunused-variable] BUILDSTDERR: 1426 | double vs=0.0,m,varderivpsi=0.0; BUILDSTDERR: | ^~ BUILDSTDERR: rlm_anova.c:1419:10: warning: unused variable 'scale' [-Wunused-variable] BUILDSTDERR: 1419 | double scale=0.0; BUILDSTDERR: | ^~~~~ BUILDSTDERR: rlm_anova.c:1418:10: warning: unused variable 'Kappa' [-Wunused-variable] BUILDSTDERR: 1418 | double Kappa=0.0; /* A correction factor */ BUILDSTDERR: | ^~~~~ BUILDSTDERR: rlm_anova.c:1417:10: warning: unused variable 'sumderivpsi' [-Wunused-variable] BUILDSTDERR: 1417 | double sumderivpsi=0.0; /* sum of psi'(r_i) */ BUILDSTDERR: | ^~~~~~~~~~~ BUILDSTDERR: rlm_anova.c:1415:10: warning: unused variable 'sumpsi2' [-Wunused-variable] BUILDSTDERR: 1415 | double sumpsi2=0.0; /* sum of psi(r_i)^2 */ BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: rlm_anova.c:1414:10: warning: unused variable 'k1' [-Wunused-variable] BUILDSTDERR: 1414 | double k1 = psi_k; /* was 1.345; */ BUILDSTDERR: | ^~ BUILDSTDERR: rlm_anova.c: In function 'rlm_wfit_anova_given_probe_effects_engine': BUILDSTDERR: rlm_anova.c:1505:10: warning: unused variable 'endprobe' [-Wunused-variable] BUILDSTDERR: 1505 | double endprobe; BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: rma_background4.c: In function 'rma_bg_correct': BUILDSTDERR: rma_background4.c:343:10: warning: unused variable 'param' [-Wunused-variable] BUILDSTDERR: 343 | double param[3]; BUILDSTDERR: | ^~~~~ BUILDSTDERR: rma_background4.c:342:10: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 342 | size_t j; BUILDSTDERR: | ^ BUILDSTDERR: rma_background4.c: In function 'R_rma_bg_correct': BUILDSTDERR: rma_background4.c:492:12: warning: 'PMcopy' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 492 | return PMcopy; BUILDSTDERR: | ^~~~~~ /redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rlm.c -o rlm.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rlm_anova.c -o rlm_anova.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rlm_se.c -o rlm_se.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rma_background4.c -o rma_background4.o BUILDSTDERR: gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-Dinstalling to /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64/usr/lib64/R/library/00LOCK-preprocessCore/00new/preprocessCore/libs BUILDSTDERR: ** R BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices BUILDSTDERR: finding HTML links ... done BUILDSTDERR: ** building package indices BUILDSTDERR: ** testing if installed package can be loaded from temporary location BUILDSTDERR: ** checking absolute paths in shared objects and dynamic libraries BUILDSTDERR: ** testing if installed package can be loaded from final location BUILDSTDERR: ** testing if installed package keeps a record of temporary installation path BUILDSTDERR: * DONE (preprocessCore) + test -d preprocessCore/src + cd preprocessCore/src + rm -f R_colSummarize.o R_plmd_interfaces.o R_plmr_interfaces.o R_rlm_interfaces.o R_subColSummarize.o R_subrcModel_interfaces.o avg.o avg_log.o biweight.o init_package.o lm.o log_avg.o log_median.o matrix_functions.o median.o median_log.o medianpolish.o plmd.o plmr.o psi_fns.o qnorm.o rlm.o rlm_anova.o rlm_se.o rma_background4.o rma_common.o weightedkerneldensity.o preprocessCore.so + rm -rf /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64/usr/lib64/R/library/R.css + install -m 664 -p /builddir/build/SOURCES/preprocessCore_license /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64/usr/lib64/R/library/preprocessCore + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.42.0-5.fc31 --unique-debug-suffix -1.42.0-5.fc31.riscv64 --unique-debug-src-base R-preprocessCore-1.42.0-5.fc31.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/preprocessCore BUILDSTDERR: 937 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs _FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rma_common.c -o rma_common.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I/usr/local/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c weightedkerneldensity.c -o weightedkerneldensity.o gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o preprocessCore.so R_colSummarize.o R_plmd_interfaces.o R_plmr_interfaces.o R_rlm_interfaces.o R_subColSummarize.o R_subrcModel_interfaces.o avg.o avg_log.o biweight.o init_package.o lm.o log_avg.o log_median.o matrix_functions.o median.o median_log.o medianpolish.o plmd.o plmr.o psi_fns.o qnorm.o rlm.o rlm_anova.o rlm_se.o rma_background4.o rma_common.o weightedkerneldensity.o -lpthread -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -L -L -lgfortran -lm -L/usr/lib64/R/lib -lR converting help for package 'preprocessCore' colSummarize html normalize.quantiles html normalize.quantiles.in.blocks html normalize.quantiles.robust html normalize.quantiles.target html rcModelPLMd html rcModelPLMr html rcModels html rma.background.correct html subColSummarize html subrcModels html explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64/usr/lib64/R/library/preprocessCore/libs/preprocessCore.so extracting debug info from /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64/usr/lib64/R/library/preprocessCore/libs/preprocessCore.so original debug info size: 692kB, size after compression: 632kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.fhma5m + umask 022 + cd /builddir/build/BUILD + cd preprocessCore + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Processing files: R-preprocessCore-1.42.0-5.fc31.riscv64 Provides: R(preprocessCore) = 1.42.0 R-preprocessCore = 1.42.0-5.fc31 R-preprocessCore(riscv-64) = 1.42.0-5.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(stats) R-core ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libRlapack.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) rtld(GNU_HASH) Processing files: R-preprocessCore-devel-1.42.0-5.fc31.riscv64 Provides: R-preprocessCore-devel = 1.42.0-5.fc31 R-preprocessCore-devel(riscv-64) = 1.42.0-5.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-preprocessCore-debugsource-1.42.0-5.fc31.riscv64 Provides: R-preprocessCore-debugsource = 1.42.0-5.fc31 R-preprocessCore-debugsource(riscv-64) = 1.42.0-5.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-preprocessCore-debuginfo-1.42.0-5.fc31.riscv64 Provides: R-preprocessCore-debuginfo = 1.42.0-5.fc31 R-preprocessCore-debuginfo(riscv-64) = 1.42.0-5.fc31 debuginfo(build-id) = 0c7396dadb7513d359c0cca73bf356dbc59940c4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-preprocessCore-debugsource(riscv-64) = 1.42.0-5.fc31 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64 Wrote: /builddir/build/RPMS/R-preprocessCore-1.42.0-5.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/R-preprocessCore-devel-1.42.0-5.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/R-preprocessCore-debuginfo-1.42.0-5.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/R-preprocessCore-debugsource-1.42.0-5.fc31.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.dy51Un + umask 022 + cd /builddir/build/BUILD + cd preprocessCore + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-preprocessCore-1.42.0-5.fc31.riscv64 + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Child return code was: 0