Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'], chrootPath='/var/lib/mock/f33-build-151925-43283/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False sh: /usr/bin/python: No such file or directory Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1563926400 Wrote: /builddir/build/SRPMS/apbs-1.5-4.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'], chrootPath='/var/lib/mock/f33-build-151925-43283/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False sh: /usr/bin/python: No such file or directory Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1563926400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.44zlLJ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf apbs-pdb2pqr-apbs-1.5 + /usr/bin/gzip -dc /builddir/build/SOURCES/apbs-1.5.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd apbs-pdb2pqr-apbs-1.5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + cd apbs Patch #0 (apbs-cmake.patch): + echo 'Patch #0 (apbs-cmake.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file CMakeLists.txt patching file src/CMakeLists.txt patching file tools/manip/CMakeLists.txt patching file tools/mesh/CMakeLists.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.BuAJVK + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-apbs-1.5 + cd apbs + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D BUILD_DOC:BOOL=ON . -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machine epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found -- Inline functions enabled -- Verbose debugging mode enabled -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies m;stdc++;maloc;apbs_generic;apbs_pmgc -- Added apbs_mg -- Adding apbs_routines -- With source files routines.c -- With external header files -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_routines -- -- -- APBS Libraries: m;stdc++;maloc -- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines -- *************************** *************************** -- -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -- Building documentation enabled -- Found Doxygen: /usr/bin/doxygen (found version "1.8.17") found components: doxygen dot -- Supplemental tools enabled -- Building mesh -- libraries: apbs -- Building manip -- libraries: apbs -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE LIB_SUFFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D BUILD_DOC:BOOL=OFF . -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machine epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Inline functions enabled -- Verbose debugging mode enabled -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies m;stdc++;maloc;apbs_generic;apbs_pmgc -- Added apbs_mg -- Adding apbs_routines -- With source files routines.c -- With external header files -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_routines -- -- -- APBS Libraries: m;stdc++;maloc -- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines -- *************************** *************************** -- -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -- Supplemental tools enabled -- Building mesh -- libraries: apbs -- Building manip -- libraries: apbs -- Configuring done -- Generating done -- Build files have been written to: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs + make -j4 /usr/bin/cmake -S/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs -B/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/CMakeFiles /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= Scanning dependencies of target apbs_mg make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build Scanning dependencies of target apbs_pmgc Scanning dependencies of target apbs_generic make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build Scanning dependencies of target apbs_routines make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' [ 1%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c [ 2%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c [ 3%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c [ 5%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_routines.dir/routines.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c: In function 'VbuildA': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:61:5: note: in expansion of macro 'MAT2' 61 | MAT2(ac, *nx * *ny * *nz, 14); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c: In function 'VbuildA_fv': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:162:5: note: in expansion of macro 'MAT3' 162 | MAT3(gzcf, *nx, *ny, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:161:5: note: in expansion of macro 'MAT3' 161 | MAT3(gycf, *nx, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:160:5: note: in expansion of macro 'MAT3' 160 | MAT3(gxcf, *ny, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:159:5: note: in expansion of macro 'MAT3' 159 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:158:5: note: in expansion of macro 'MAT3' 158 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:156:5: note: in expansion of macro 'MAT3' 156 | MAT3(a3cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:155:5: note: in expansion of macro 'MAT3' 155 | MAT3(a2cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:154:5: note: in expansion of macro 'MAT3' 154 | MAT3(a1cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:153:5: note: in expansion of macro 'MAT3' 153 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:152:5: note: in expansion of macro 'MAT3' 152 | MAT3( ccf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:151:5: note: in expansion of macro 'MAT3' 151 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:150:5: note: in expansion of macro 'MAT3' 150 | MAT3( fcf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:149:5: note: in expansion of macro 'MAT3' 149 | MAT3( fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c:816:6: warning: variable 'isBinary' set but not used [-Wunused-but-set-variable] 816 | int isBinary = 0; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c:813:18: warning: unused variable 'itmp' [-Wunused-variable] 813 | size_t i, j, k, itmp, u; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c: In function 'Vgrid_writeUHBD': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c:1697:36: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 1697 | double xmin, ymin, zmin, hzed, hy, hx; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c:1697:30: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 1697 | double xmin, ymin, zmin, hzed, hy, hx; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c:853:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 853 | fgets(tok, VMAX_BUFSIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'loadDielMaps': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 296 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 298 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 331 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 333 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 420 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 422 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 454 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 456 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'initMG': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable] 1234 | iparm, | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c: In function 'NOsh_setupCalcGEOFLOWMANUAL': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'energyMG': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:2676:15: warning: variable 'apolparm' set but not used [-Wunused-but-set-variable] 2676 | APOLparm *apolparm = VNULL; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:1576:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable] 1576 | MGparm *mgparm; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'writematMG': In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:1795:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable] 1795 | char mxtype[3]; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'printApolForce': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:3477:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable] 3477 | scalar, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:3476:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 3476 | double temp, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4488:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable] 4488 | sav, /**< @todo document */ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4487:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable] 4487 | double sasa, /**< @todo document */ | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4481:12: warning: unused variable 'ts' [-Wunused-variable] 4481 | time_t ts; /**< Temporary timing variable for debugging (PCE) */ | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'forceAPOL': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4745:13: warning: unused variable 'apos' [-Wunused-variable] 4745 | *apos; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4729:46: warning: unused variable 'ts_sub' [-Wunused-variable] 4729 | time_t ts, ts_main, ts_sub; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ [ 6%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c: In function 'Vbuildband': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:60:5: note: in expansion of macro 'MAT2' 60 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_7': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:128:5: note: in expansion of macro 'MAT3' 128 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:127:5: note: in expansion of macro 'MAT3' 127 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:126:5: note: in expansion of macro 'MAT3' 126 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:125:5: note: in expansion of macro 'MAT3' 125 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:123:5: note: in expansion of macro 'MAT2' 123 | MAT2(acB, *lda, *ny-1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_27': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:208:5: note: in expansion of macro 'MAT3' 208 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:207:5: note: in expansion of macro 'MAT3' 207 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:206:5: note: in expansion of macro 'MAT3' 206 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:205:5: note: in expansion of macro 'MAT3' 205 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:202:5: note: in expansion of macro 'MAT3' 202 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:201:5: note: in expansion of macro 'MAT3' 201 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:200:5: note: in expansion of macro 'MAT3' 200 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:197:5: note: in expansion of macro 'MAT3' 197 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:195:5: note: in expansion of macro 'MAT3' 195 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:194:5: note: in expansion of macro 'MAT3' 194 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:193:5: note: in expansion of macro 'MAT3' 193 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:192:5: note: in expansion of macro 'MAT3' 192 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:190:5: note: in expansion of macro 'MAT2' 190 | MAT2(acB, *lda, *ny-1); | ^~~~ [ 7%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c: In function 'VbuildG': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:59:5: note: in expansion of macro 'MAT2' 59 | MAT2( ac, *nxc * *nyc * *nzc, 27); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acFF' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:58:5: note: in expansion of macro 'MAT2' 58 | MAT2(acFF, *nxf * *nyf * *nzf, 27); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pcFF' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:57:5: note: in expansion of macro 'MAT2' 57 | MAT2(pcFF, *nxc * *nyc * *nzc, 27); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c: In function 'VbuildG_1': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:211:5: note: in expansion of macro 'MAT3' 211 | MAT3(dPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:210:5: note: in expansion of macro 'MAT3' 210 | MAT3(dPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:209:5: note: in expansion of macro 'MAT3' 209 | MAT3(dPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:208:5: note: in expansion of macro 'MAT3' 208 | MAT3(dPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:207:5: note: in expansion of macro 'MAT3' 207 | MAT3( dPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:206:5: note: in expansion of macro 'MAT3' 206 | MAT3( dPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:205:5: note: in expansion of macro 'MAT3' 205 | MAT3( dPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:204:5: note: in expansion of macro 'MAT3' 204 | MAT3( dPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3( dPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:201:5: note: in expansion of macro 'MAT3' 201 | MAT3(uPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:200:5: note: in expansion of macro 'MAT3' 200 | MAT3(uPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:199:5: note: in expansion of macro 'MAT3' 199 | MAT3(uPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3(uPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:197:5: note: in expansion of macro 'MAT3' 197 | MAT3( uPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:196:5: note: in expansion of macro 'MAT3' 196 | MAT3( uPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:195:5: note: in expansion of macro 'MAT3' 195 | MAT3( uPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:194:5: note: in expansion of macro 'MAT3' 194 | MAT3( uPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:193:5: note: in expansion of macro 'MAT3' 193 | MAT3( uPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3(oPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(oPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(oPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:188:5: note: in expansion of macro 'MAT3' 188 | MAT3(oPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:187:5: note: in expansion of macro 'MAT3' 187 | MAT3( oPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:186:5: note: in expansion of macro 'MAT3' 186 | MAT3( oPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:185:5: note: in expansion of macro 'MAT3' 185 | MAT3( oPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:184:5: note: in expansion of macro 'MAT3' 184 | MAT3( oPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:183:5: note: in expansion of macro 'MAT3' 183 | MAT3( oPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:181:5: note: in expansion of macro 'MAT3' 181 | MAT3(XuSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:180:5: note: in expansion of macro 'MAT3' 180 | MAT3(XuSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:179:5: note: in expansion of macro 'MAT3' 179 | MAT3(XuNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:178:5: note: in expansion of macro 'MAT3' 178 | MAT3(XuNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:177:5: note: in expansion of macro 'MAT3' 177 | MAT3( XuS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:176:5: note: in expansion of macro 'MAT3' 176 | MAT3( XuN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:175:5: note: in expansion of macro 'MAT3' 175 | MAT3( XuW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:174:5: note: in expansion of macro 'MAT3' 174 | MAT3( XuE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:172:5: note: in expansion of macro 'MAT3' 172 | MAT3(XoNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:171:5: note: in expansion of macro 'MAT3' 171 | MAT3(XoNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:169:5: note: in expansion of macro 'MAT3' 169 | MAT3( XuC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:167:5: note: in expansion of macro 'MAT3' 167 | MAT3( XoN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:166:5: note: in expansion of macro 'MAT3' 166 | MAT3( XoE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:165:5: note: in expansion of macro 'MAT3' 165 | MAT3( XoC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:163:5: note: in expansion of macro 'MAT3' 163 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:159:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] 159 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:159:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] 159 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:159:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] 159 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:158:33: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 158 | int iim1, iip1, jjm1, jjp1, kkm1, kkp1; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c: In function 'VbuildG_7': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:527:5: note: in expansion of macro 'MAT3' 527 | MAT3(dPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:526:5: note: in expansion of macro 'MAT3' 526 | MAT3(dPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:525:5: note: in expansion of macro 'MAT3' 525 | MAT3(dPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:524:5: note: in expansion of macro 'MAT3' 524 | MAT3(dPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:523:5: note: in expansion of macro 'MAT3' 523 | MAT3( dPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:522:5: note: in expansion of macro 'MAT3' 522 | MAT3( dPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:521:5: note: in expansion of macro 'MAT3' 521 | MAT3( dPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:520:5: note: in expansion of macro 'MAT3' 520 | MAT3( dPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:519:5: note: in expansion of macro 'MAT3' 519 | MAT3( dPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:517:5: note: in expansion of macro 'MAT3' 517 | MAT3(uPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:516:5: note: in expansion of macro 'MAT3' 516 | MAT3(uPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:515:5: note: in expansion of macro 'MAT3' 515 | MAT3(uPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:514:5: note: in expansion of macro 'MAT3' 514 | MAT3(uPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:513:5: note: in expansion of macro 'MAT3' 513 | MAT3( uPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:512:5: note: in expansion of macro 'MAT3' 512 | MAT3( uPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:511:5: note: in expansion of macro 'MAT3' 511 | MAT3( uPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:510:5: note: in expansion of macro 'MAT3' 510 | MAT3( uPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:509:5: note: in expansion of macro 'MAT3' 509 | MAT3( uPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:507:5: note: in expansion of macro 'MAT3' 507 | MAT3(oPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:506:5: note: in expansion of macro 'MAT3' 506 | MAT3(oPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:505:5: note: in expansion of macro 'MAT3' 505 | MAT3(oPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:504:5: note: in expansion of macro 'MAT3' 504 | MAT3(oPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:503:5: note: in expansion of macro 'MAT3' 503 | MAT3( oPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:502:5: note: in expansion of macro 'MAT3' 502 | MAT3( oPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:501:5: note: in expansion of macro 'MAT3' 501 | MAT3( oPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:500:5: note: in expansion of macro 'MAT3' 500 | MAT3( oPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:499:5: note: in expansion of macro 'MAT3' 499 | MAT3( oPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:497:5: note: in expansion of macro 'MAT3' 497 | MAT3(XuSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:496:5: note: in expansion of macro 'MAT3' 496 | MAT3(XuSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:495:5: note: in expansion of macro 'MAT3' 495 | MAT3(XuNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:494:5: note: in expansion of macro 'MAT3' 494 | MAT3(XuNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:493:5: note: in expansion of macro 'MAT3' 493 | MAT3( XuS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:492:5: note: in expansion of macro 'MAT3' 492 | MAT3( XuN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:491:5: note: in expansion of macro 'MAT3' 491 | MAT3( XuW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:490:5: note: in expansion of macro 'MAT3' 490 | MAT3( XuE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:489:5: note: in expansion of macro 'MAT3' 489 | MAT3( XuC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:487:5: note: in expansion of macro 'MAT3' 487 | MAT3(XoNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:486:5: note: in expansion of macro 'MAT3' 486 | MAT3(XoNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:485:5: note: in expansion of macro 'MAT3' 485 | MAT3( XoN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:484:5: note: in expansion of macro 'MAT3' 484 | MAT3( XoE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:483:5: note: in expansion of macro 'MAT3' 483 | MAT3( XoC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:481:5: note: in expansion of macro 'MAT3' 481 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:479:5: note: in expansion of macro 'MAT3' 479 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:478:5: note: in expansion of macro 'MAT3' 478 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:477:5: note: in expansion of macro 'MAT3' 477 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:468:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] 468 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:468:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] 468 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:468:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] 468 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:467:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 467 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:464:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 464 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:464:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 464 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:463:28: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 463 | int jm1, jp1, jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:462:28: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 462 | int im1, ip1, im2, ip2; | ^~~ [ 8%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:1832:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1832 | sprintf(outpath, "%s.%s", writematstem, "mat"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:871, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c: In function 'VbuildG_27': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1375:5: note: in expansion of macro 'MAT3' 1375 | MAT3(dPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1374:5: note: in expansion of macro 'MAT3' 1374 | MAT3(dPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1373:5: note: in expansion of macro 'MAT3' 1373 | MAT3(dPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1372:5: note: in expansion of macro 'MAT3' 1372 | MAT3(dPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1371:5: note: in expansion of macro 'MAT3' 1371 | MAT3( dPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1370:5: note: in expansion of macro 'MAT3' 1370 | MAT3( dPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1369:5: note: in expansion of macro 'MAT3' 1369 | MAT3( dPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1368:5: note: in expansion of macro 'MAT3' 1368 | MAT3( dPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1367:5: note: in expansion of macro 'MAT3' 1367 | MAT3( dPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1365:5: note: in expansion of macro 'MAT3' 1365 | MAT3(uPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1364:5: note: in expansion of macro 'MAT3' 1364 | MAT3(uPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1363:5: note: in expansion of macro 'MAT3' 1363 | MAT3(uPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1362:5: note: in expansion of macro 'MAT3' 1362 | MAT3(uPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1361:5: note: in expansion of macro 'MAT3' 1361 | MAT3( uPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1360:5: note: in expansion of macro 'MAT3' 1360 | MAT3( uPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1359:5: note: in expansion of macro 'MAT3' 1359 | MAT3( uPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1358:5: note: in expansion of macro 'MAT3' 1358 | MAT3( uPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1357:5: note: in expansion of macro 'MAT3' 1357 | MAT3( uPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1355:5: note: in expansion of macro 'MAT3' 1355 | MAT3(oPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1354:5: note: in expansion of macro 'MAT3' 1354 | MAT3(oPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1353:5: note: in expansion of macro 'MAT3' 1353 | MAT3(oPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1352:5: note: in expansion of macro 'MAT3' 1352 | MAT3(oPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1351:5: note: in expansion of macro 'MAT3' 1351 | MAT3( oPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1350:5: note: in expansion of macro 'MAT3' 1350 | MAT3( oPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1349:5: note: in expansion of macro 'MAT3' 1349 | MAT3( oPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1348:5: note: in expansion of macro 'MAT3' 1348 | MAT3( oPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1347:5: note: in expansion of macro 'MAT3' 1347 | MAT3( oPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1345:5: note: in expansion of macro 'MAT3' 1345 | MAT3(XuSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1344:5: note: in expansion of macro 'MAT3' 1344 | MAT3(XuSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1343:5: note: in expansion of macro 'MAT3' 1343 | MAT3(XuNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1342:5: note: in expansion of macro 'MAT3' 1342 | MAT3(XuNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1341:5: note: in expansion of macro 'MAT3' 1341 | MAT3( XuS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1340:5: note: in expansion of macro 'MAT3' 1340 | MAT3( XuN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1339:5: note: in expansion of macro 'MAT3' 1339 | MAT3( XuW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1338:5: note: in expansion of macro 'MAT3' 1338 | MAT3( XuE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1337:5: note: in expansion of macro 'MAT3' 1337 | MAT3( XuC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1335:5: note: in expansion of macro 'MAT3' 1335 | MAT3(XoNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1334:5: note: in expansion of macro 'MAT3' 1334 | MAT3(XoNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1333:5: note: in expansion of macro 'MAT3' 1333 | MAT3( XoN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1332:5: note: in expansion of macro 'MAT3' 1332 | MAT3( XoE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'writedataFlat': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1331:5: note: in expansion of macro 'MAT3' 1331 | MAT3( XoC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2097:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2097 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1329:5: note: in expansion of macro 'MAT3' 1329 | MAT3( uSW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1328:5: note: in expansion of macro 'MAT3' 1328 | MAT3( uSE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1327:5: note: in expansion of macro 'MAT3' 1327 | MAT3( uNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1326:5: note: in expansion of macro 'MAT3' 1326 | MAT3( uNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1325:5: note: in expansion of macro 'MAT3' 1325 | MAT3( uS, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1324:5: note: in expansion of macro 'MAT3' 1324 | MAT3( uN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1323:5: note: in expansion of macro 'MAT3' 1323 | MAT3( uW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1322:5: note: in expansion of macro 'MAT3' 1322 | MAT3( uE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1321:5: note: in expansion of macro 'MAT3' 1321 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1319:5: note: in expansion of macro 'MAT3' 1319 | MAT3( oNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1318:5: note: in expansion of macro 'MAT3' 1318 | MAT3( oNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1317:5: note: in expansion of macro 'MAT3' 1317 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1316:5: note: in expansion of macro 'MAT3' 1316 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1315:5: note: in expansion of macro 'MAT3' 1315 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1272:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] 1272 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1272:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] 1272 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1272:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] 1272 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1271:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 1271 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1268:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 1268 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1268:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 1268 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c: In function 'Vmgrid_addGrid': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c:198:12: warning: unused variable 'tgrad' [-Wunused-variable] 198 | double tgrad[3]; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c:197:15: warning: unused variable 'rc' [-Wunused-variable] 197 | int i, j, rc; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c:197:12: warning: unused variable 'j' [-Wunused-variable] 197 | int i, j, rc; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c:197:9: warning: unused variable 'i' [-Wunused-variable] 197 | int i, j, rc; | ^ In file included from /usr/include/string.h:495, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:57: In function 'strncpy', inlined from 'NOsh_parseAPOLAR' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1341:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:582:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseELEC' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1222:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:577:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MESH' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:953:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1007:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_CHARGE' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:918:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1005:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_POTENTIAL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:872:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1003:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_KAPPA' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:827:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1001:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:772:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:776:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:780:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:723:13, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:997:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:701:13, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:997:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:659:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:640:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:621:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'writedataXML': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2355:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2355 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c: In function 'Vopot_curvature': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c:219:26: warning: variable 'eps_w' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c:219:18: warning: variable 'charge' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c:219:15: warning: variable 'T' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'writedataMG': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2668:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2668 | sprintf(outpath, "%s.%s", writestem, "dxbin"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:871, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2712:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2712 | sprintf(outpath, "%s.%s", writestem, "txt"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:871, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2703:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2703 | sprintf(outpath, "%s.%s", writestem, "dx.gz"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:871, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2686:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2686 | sprintf(outpath, "%s.%s", writestem, "mcsf"); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:871, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2679:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2679 | sprintf(outpath, "%s.%s", writestem, "ucd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:871, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2693:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2693 | sprintf(outpath, "%s.%s", writestem, "grd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:871, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2658:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2658 | sprintf(outpath, "%s.%s", writestem, "dx"); | ^~ ~~~~ In file included from /usr/include/stdio.h:871, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c:269:23: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized] 269 | u = u + val; | ~~^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'returnEnergy': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2770:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2770 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'printEnergy': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2831:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2831 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * [ 11%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'printElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2896:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2896 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * [ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/mgparm.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'printApolEnergy': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2962:18: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2962 | gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2963 | (apolparm->press*apolparm->sav) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2964 | (apolparm->wcaEnergy))); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:157:61: warning: variable 'zkappa2' set but not used [-Wunused-but-set-variable] 157 | double ionConc[MAXION], ionQ[MAXION], ionRadii[MAXION], zkappa2, zks2; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_qmEnergySMPBE': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1503:12: warning: variable 'zks2' set but not used [-Wunused-but-set-variable] 1503 | zks2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_qfEnergyPoint': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1712:13: warning: variable 'pvec' set but not used [-Wunused-but-set-variable] 1712 | double *pvec; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1709:24: warning: variable 'zmax' set but not used [-Wunused-but-set-variable] 1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1709:18: warning: variable 'ymax' set but not used [-Wunused-but-set-variable] 1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1709:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] 1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_qfAtomEnergy': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1794:36: warning: variable 'zmax' set but not used [-Wunused-but-set-variable] 1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1794:24: warning: variable 'ymax' set but not used [-Wunused-but-set-variable] 1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1794:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] 1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'focusFillBound': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1953:12: warning: variable 'charge' set but not used [-Wunused-but-set-variable] 1953 | charge, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1952:13: warning: variable 'apos' set but not used [-Wunused-but-set-variable] 1952 | *apos, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1951:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] 1951 | size, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1950:12: warning: variable 'xkappa' set but not used [-Wunused-but-set-variable] 1950 | xkappa, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcfl2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2668:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable] 2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2668:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable] 2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2668:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable] 2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcCalcOrig': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2832:34: warning: unused variable 'debye' [-Wunused-variable] 2832 | double *dipole, *quadrupole, debye, eps_p; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2832:22: warning: variable 'quadrupole' set but not used [-Wunused-but-set-variable] 2832 | double *dipole, *quadrupole, debye, eps_p; | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2832:13: warning: variable 'dipole' set but not used [-Wunused-but-set-variable] 2832 | double *dipole, *quadrupole, debye, eps_p; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcflnew': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3454: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 3454 | #pragma omp parallel for default(shared) private(igrid,iatom,dist) | /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3464: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 3464 | #pragma omp parallel for default(shared) private(igrid,iatom,dist) | /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3415:31: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable] 3415 | double dist, pre1, eps_w, eps_p, T, xkappa; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:29: warning: unused variable 'z1' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:25: warning: unused variable 'z0' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:21: warning: unused variable 'y1' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:17: warning: unused variable 'y0' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:13: warning: unused variable 'x1' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:9: warning: unused variable 'x0' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3409:13: warning: unused variable 'k' [-Wunused-variable] 3409 | int i,j,k, iatom, igrid; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3409:11: warning: unused variable 'j' [-Wunused-variable] 3409 | int i,j,k, iatom, igrid; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3409:9: warning: unused variable 'i' [-Wunused-variable] 3409 | int i,j,k, iatom, igrid; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'multipolebc': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3492:19: warning: variable 'kr3' set but not used [-Wunused-but-set-variable] 3492 | double kr,kr2,kr3; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcfl_sdh': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3608:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable] 3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3608:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable] 3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3608:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable] 3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3604:22: warning: unused variable 'quadrupole' [-Wunused-variable] 3604 | double *dipole, *quadrupole; | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3604:13: warning: unused variable 'dipole' [-Wunused-variable] 3604 | double *dipole, *quadrupole; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcfl_mdh': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3875:41: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable] 3875 | double size, charge, xkappa, eps_w, eps_p, T, pre1, dist; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3874:22: warning: unused variable 'quadrupole' [-Wunused-variable] 3874 | double *dipole, *quadrupole; | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3874:13: warning: unused variable 'dipole' [-Wunused-variable] 3874 | double *dipole, *quadrupole; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcfl_mem': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4008:24: warning: unused variable 'edge_L' [-Wunused-variable] 4008 | double A, B, C, D, edge_L, l; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4007:38: warning: unused variable 'z_shift' [-Wunused-variable] 4007 | double dist, val, z_low, z_high, z_shift; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4007:12: warning: unused variable 'dist' [-Wunused-variable] 4007 | double dist, val, z_low, z_high, z_shift; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcfl_map': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4177:38: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 4177 | double position[3], pot, hx, hy, hzed; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4177:34: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 4177 | double position[3], pot, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4177:30: warning: variable 'hx' set but not used [-Wunused-but-set-variable] 4177 | double position[3], pot, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4176:11: warning: unused variable 'pbe' [-Wunused-variable] 4176 | Vpbe *pbe; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefMap': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4492:46: warning: unused variable 'pot' [-Wunused-variable] 4492 | double ionstr, position[3], tkappa, eps, pot, hx, hy, hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolIon': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4638:16: warning: variable 'surfMeth' set but not used [-Wunused-but-set-variable] 4638 | Vsurf_Meth surfMeth; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4630:11: warning: variable 'acc' set but not used [-Wunused-but-set-variable] 4630 | Vacc *acc; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolDielNoSmooth': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4789: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 4789 | #pragma omp parallel for default(shared) private(iatom,atom,apos,arad) | /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4849: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 4849 | #pragma omp parallel for default(shared) private(iatom,atom,area,asurf,ipt,position) | /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4746:30: warning: unused variable 'deps' [-Wunused-variable] 4746 | double srad, epsw, epsp, deps, area; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5031:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 5031 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin, w3i; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCharge': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5289:15: warning: unused variable 'rc' [-Wunused-variable] 5289 | Vrc_Codes rc; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoChargeMap': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5346:49: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 5346 | double position[3], charge, zmagic, hx, hy, hzed; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5346:45: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 5346 | double position[3], charge, zmagic, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5346:41: warning: variable 'hx' set but not used [-Wunused-but-set-variable] 5346 | double position[3], charge, zmagic, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_force': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5829:12: warning: unused variable 'npF' [-Wunused-variable] 5829 | double npF[3]; /* Non-polar boundary force */ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_ibForce': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5854:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5854:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5854:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5848:13: warning: variable 'alist' set but not used [-Wunused-but-set-variable] 5848 | Valist *alist; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_dbForce': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6019:55: warning: variable 'kT' set but not used [-Wunused-but-set-variable] 6019 | double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6019:18: warning: variable 'dx' set but not used [-Wunused-but-set-variable] 6019 | double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6018:66: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6018:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6018:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6018:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'qfForceSpline2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6453:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6453:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6453:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'qfForceSpline4': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6576:15: warning: unused variable 'k' [-Wunused-variable] 6576 | int i, j, k, ii, jj, kk; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6576:12: warning: unused variable 'j' [-Wunused-variable] 6576 | int i, j, k, ii, jj, kk; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6568:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6568:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6568:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'markFrac': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6692:39: warning: variable 'a000' set but not used [-Wunused-but-set-variable] 6692 | double dx, dx2, dy, dy2, dz, dz2, a000, a001, a010, a100, r2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'zlapSolve': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6912:12: warning: unused variable 'norm' [-Wunused-variable] 6912 | double norm, coef, proj, eigx, eigy, eigz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_solveLaplace': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7044:35: warning: variable 'n' set but not used [-Wunused-but-set-variable] 7044 | int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7044:18: warning: unused variable 'ijk' [-Wunused-variable] 7044 | int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoPermanentMultipole': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:58: warning: unused variable 'mqzz' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:53: warning: unused variable 'mqzy' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:48: warning: unused variable 'mqzx' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:43: warning: unused variable 'mqyy' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:38: warning: unused variable 'mqyx' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:33: warning: unused variable 'mqxx' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:29: warning: unused variable 'muz' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:25: warning: unused variable 'muy' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:21: warning: unused variable 'mux' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:18: warning: unused variable 'mc' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:12: warning: unused variable 'debye' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7262:24: warning: unused variable 'mr2' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7262:20: warning: unused variable 'mkr' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7262:16: warning: unused variable 'mjr' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7262:12: warning: unused variable 'mir' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7258:9: warning: unused variable 'i' [-Wunused-variable] 7258 | int i, ii, jj, kk, nx, ny, nz, iatom; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7253:47: warning: unused variable 'qave' [-Wunused-variable] 7253 | double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7252:29: warning: unused variable 'quad' [-Wunused-variable] 7252 | double charge, *dipole,*quad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7252:21: warning: unused variable 'dipole' [-Wunused-variable] 7252 | double charge, *dipole,*quad; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline4': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:9948:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 9948 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:9946:42: warning: unused variable 'w2i' [-Wunused-variable] 9946 | double irad, dx, dy, dz, epsw, epsp, w2i; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoPermanentInduced': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10278:9: warning: unused variable 'i' [-Wunused-variable] 10278 | int i, ii, jj, kk, nx, ny, nz, iatom; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10273:47: warning: unused variable 'qave' [-Wunused-variable] 10273 | double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10272:29: warning: unused variable 'quad' [-Wunused-variable] 10272 | double charge, *dipole,*quad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10272:21: warning: unused variable 'dipole' [-Wunused-variable] 10272 | double charge, *dipole,*quad; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline3': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10441:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] 10441 | double e, e2, e3, e4, e5; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10439:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 10439 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10437:42: warning: unused variable 'w2i' [-Wunused-variable] 10437 | double irad, dx, dy, dz, epsw, epsp, w2i; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcolcomp': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10746:55: warning: variable 'mxlv' set but not used [-Wunused-but-set-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10746:47: warning: unused variable 'maxlev' [-Wunused-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10746:39: warning: unused variable 'ierror' [-Wunused-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10746:15: warning: variable 'niwk' set but not used [-Wunused-but-set-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10746:9: warning: variable 'nrwk' set but not used [-Wunused-but-set-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10743:29: warning: unused variable 'i' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10743:21: warning: unused variable 'nnzero' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10743:15: warning: unused variable 'ncol' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10743:9: warning: unused variable 'nrow' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:73: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcolcomp2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10804:5: note: in expansion of macro 'MAT2' 10804 | MAT2(iz, 50, nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcolcomp3': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10836:5: note: in expansion of macro 'MAT2' 10836 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcolcomp4': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10874:5: note: in expansion of macro 'MAT3' 10874 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10873:5: note: in expansion of macro 'MAT3' 10873 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10872:5: note: in expansion of macro 'MAT3' 10872 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10871:5: note: in expansion of macro 'MAT3' 10871 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10870:5: note: in expansion of macro 'MAT3' 10870 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10866:27: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 10866 | int inonz, iirow, nn, nrow, ncol, nonz, irow, n; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:73: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7229:16: warning: 'd3bspline4' defined but not used [-Wunused-function] 7229 | VPUBLIC double d3bspline4(double x) { | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6684:15: warning: 'markFrac' defined but not used [-Wunused-function] 6684 | VPRIVATE void markFrac( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3868:15: warning: 'bcfl_mdh' defined but not used [-Wunused-function] 3868 | VPRIVATE void bcfl_mdh(Vpmg *thee){ | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2828:15: warning: 'bcCalcOrig' defined but not used [-Wunused-function] 2828 | VPRIVATE void bcCalcOrig(Vpmg *thee) { | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2547:17: warning: 'bcfl1sp' defined but not used [-Wunused-function] 2547 | VPRIVATE double bcfl1sp(double size, double *apos, double charge, | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1148:17: warning: 'Vpmg_polarizEnergy' defined but not used [-Wunused-function] 1148 | VPRIVATE double Vpmg_polarizEnergy(Vpmg *thee, | ^~~~~~~~~~~~~~~~~~ [ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'initAPOL': cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/femparm.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4539:30: warning: 'center[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4539 | disp[0] = (x - center[0]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4540:30: warning: 'center[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4540 | disp[1] = (y - center[1]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4541:30: warning: 'center[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4541 | disp[2] = (z - center[2]); | ~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' [ 13%] Built target apbs_routines [ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c: In function 'PBAMparm_parseRandorient': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:302:17: warning: unused variable 'name' [-Wunused-variable] 302 | const char* name = "randorient"; | ^~~~ [ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c In file included from /usr/include/string.h:495, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:68, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:57: In function 'strncpy', inlined from 'PBAMparm_parseRunType' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:279:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseRunName' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:294:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseUnits' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:341:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parse3Dmap' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:376:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseDX' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:426:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTermcombine' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:440:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:392:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:400:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseXYZ' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:640:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseDiff' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:488:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c: In function 'PBSAMparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ In file included from /usr/include/string.h:495, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:68, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c:57: In function 'strncpy', inlined from 'PBSAMparm_parseSurf' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c:174:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:548:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:557:11: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBSAMparm_parseImat' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c:195:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBSAMparm_parseExp' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c:210:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c [ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbeparm.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildP': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:62:5: note: in expansion of macro 'MAT2' 62 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:61:5: note: in expansion of macro 'MAT2' 61 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildP_trilin': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:96:5: note: in expansion of macro 'MAT2' 96 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_trilin': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:158:5: note: in expansion of macro 'MAT3' 158 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:156:5: note: in expansion of macro 'MAT3' 156 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:155:5: note: in expansion of macro 'MAT3' 155 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:153:5: note: in expansion of macro 'MAT3' 153 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:152:5: note: in expansion of macro 'MAT3' 152 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:151:5: note: in expansion of macro 'MAT3' 151 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:150:5: note: in expansion of macro 'MAT3' 150 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:149:5: note: in expansion of macro 'MAT3' 149 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:147:5: note: in expansion of macro 'MAT3' 147 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:146:5: note: in expansion of macro 'MAT3' 146 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:145:5: note: in expansion of macro 'MAT3' 145 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:144:5: note: in expansion of macro 'MAT3' 144 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:142:5: note: in expansion of macro 'MAT3' 142 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:141:5: note: in expansion of macro 'MAT3' 141 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:140:5: note: in expansion of macro 'MAT3' 140 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:139:5: note: in expansion of macro 'MAT3' 139 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:138:5: note: in expansion of macro 'MAT3' 138 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:136:5: note: in expansion of macro 'MAT3' 136 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:135:5: note: in expansion of macro 'MAT3' 135 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:134:5: note: in expansion of macro 'MAT3' 134 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:133:5: note: in expansion of macro 'MAT3' 133 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:131:5: note: in expansion of macro 'MAT3' 131 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:130:5: note: in expansion of macro 'MAT3' 130 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:129:5: note: in expansion of macro 'MAT3' 129 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:128:5: note: in expansion of macro 'MAT3' 128 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:127:5: note: in expansion of macro 'MAT3' 127 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op7': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:207:5: note: in expansion of macro 'MAT2' 207 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:206:5: note: in expansion of macro 'MAT2' 206 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op7': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:282:5: note: in expansion of macro 'MAT3' 282 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:281:5: note: in expansion of macro 'MAT3' 281 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:280:5: note: in expansion of macro 'MAT3' 280 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:279:5: note: in expansion of macro 'MAT3' 279 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:278:5: note: in expansion of macro 'MAT3' 278 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:277:5: note: in expansion of macro 'MAT3' 277 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:276:5: note: in expansion of macro 'MAT3' 276 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:275:5: note: in expansion of macro 'MAT3' 275 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:274:5: note: in expansion of macro 'MAT3' 274 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:273:5: note: in expansion of macro 'MAT3' 273 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:272:5: note: in expansion of macro 'MAT3' 272 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:271:5: note: in expansion of macro 'MAT3' 271 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:270:5: note: in expansion of macro 'MAT3' 270 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:269:5: note: in expansion of macro 'MAT3' 269 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:268:5: note: in expansion of macro 'MAT3' 268 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:267:5: note: in expansion of macro 'MAT3' 267 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:266:5: note: in expansion of macro 'MAT3' 266 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:265:5: note: in expansion of macro 'MAT3' 265 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:264:5: note: in expansion of macro 'MAT3' 264 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:263:5: note: in expansion of macro 'MAT3' 263 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:262:5: note: in expansion of macro 'MAT3' 262 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:261:5: note: in expansion of macro 'MAT3' 261 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:260:5: note: in expansion of macro 'MAT3' 260 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:259:5: note: in expansion of macro 'MAT3' 259 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:258:5: note: in expansion of macro 'MAT3' 258 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:257:5: note: in expansion of macro 'MAT3' 257 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:256:5: note: in expansion of macro 'MAT3' 256 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:255:5: note: in expansion of macro 'MAT3' 255 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:254:5: note: in expansion of macro 'MAT3' 254 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:253:5: note: in expansion of macro 'MAT3' 253 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:252:5: note: in expansion of macro 'MAT3' 252 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:250:32: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] 250 | double won, half, quarter, eighth; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:250:23: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] 250 | double won, half, quarter, eighth; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:250:17: warning: variable 'half' set but not used [-Wunused-but-set-variable] 250 | double won, half, quarter, eighth; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:248:15: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] 248 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:248:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 248 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:247:15: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] 247 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:247:9: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] 247 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:246:15: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] 246 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:246:9: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] 246 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:245:16: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 245 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:245:10: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 245 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:243:16: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 243 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:243:10: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] 243 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:241:16: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 241 | int im2, ip2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:241:10: warning: variable 'im2' set but not used [-Wunused-but-set-variable] 241 | int im2, ip2; | ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op27': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:723:5: note: in expansion of macro 'MAT2' 723 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:722:5: note: in expansion of macro 'MAT2' 722 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op27': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:813:7: note: in expansion of macro 'MAT3' 813 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:812:7: note: in expansion of macro 'MAT3' 812 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:811:7: note: in expansion of macro 'MAT3' 811 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:810:7: note: in expansion of macro 'MAT3' 810 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:809:7: note: in expansion of macro 'MAT3' 809 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:808:7: note: in expansion of macro 'MAT3' 808 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:807:7: note: in expansion of macro 'MAT3' 807 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:806:7: note: in expansion of macro 'MAT3' 806 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:805:7: note: in expansion of macro 'MAT3' 805 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:804:7: note: in expansion of macro 'MAT3' 804 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:803:7: note: in expansion of macro 'MAT3' 803 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:802:7: note: in expansion of macro 'MAT3' 802 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:801:7: note: in expansion of macro 'MAT3' 801 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:800:7: note: in expansion of macro 'MAT3' 800 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:799:7: note: in expansion of macro 'MAT3' 799 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:798:7: note: in expansion of macro 'MAT3' 798 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:797:7: note: in expansion of macro 'MAT3' 797 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:796:7: note: in expansion of macro 'MAT3' 796 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:795:7: note: in expansion of macro 'MAT3' 795 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:794:7: note: in expansion of macro 'MAT3' 794 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:793:7: note: in expansion of macro 'MAT3' 793 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:792:7: note: in expansion of macro 'MAT3' 792 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:791:7: note: in expansion of macro 'MAT3' 791 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:790:7: note: in expansion of macro 'MAT3' 790 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:789:7: note: in expansion of macro 'MAT3' 789 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:788:7: note: in expansion of macro 'MAT3' 788 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:787:7: note: in expansion of macro 'MAT3' 787 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:786:7: note: in expansion of macro 'MAT3' 786 | MAT3( uSW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:785:7: note: in expansion of macro 'MAT3' 785 | MAT3( uSE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:784:7: note: in expansion of macro 'MAT3' 784 | MAT3( uNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:783:7: note: in expansion of macro 'MAT3' 783 | MAT3( uNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:782:7: note: in expansion of macro 'MAT3' 782 | MAT3( uS, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:781:7: note: in expansion of macro 'MAT3' 781 | MAT3( uN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:780:7: note: in expansion of macro 'MAT3' 780 | MAT3( uW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:779:7: note: in expansion of macro 'MAT3' 779 | MAT3( uE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:778:7: note: in expansion of macro 'MAT3' 778 | MAT3( oNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:777:7: note: in expansion of macro 'MAT3' 777 | MAT3( oNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:776:7: note: in expansion of macro 'MAT3' 776 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:775:7: note: in expansion of macro 'MAT3' 775 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:774:7: note: in expansion of macro 'MAT3' 774 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:773:7: note: in expansion of macro 'MAT3' 773 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:771:34: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] 771 | double won, half, quarter, eighth; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:771:25: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] 771 | double won, half, quarter, eighth; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:771:19: warning: variable 'half' set but not used [-Wunused-but-set-variable] 771 | double won, half, quarter, eighth; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:769:17: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] 769 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:769:11: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 769 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:768:17: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] 768 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:768:11: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] 768 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:767:17: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] 767 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:767:11: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] 767 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:766:18: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 766 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:766:12: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 766 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:764:18: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 764 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:764:12: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] 764 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:762:18: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 762 | int im2, ip2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:762:12: warning: variable 'im2' set but not used [-Wunused-but-set-variable] 762 | int im2, ip2; | ^~~ In file included from /usr/include/string.h:495, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbeparm.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbeparm.c:57: In function 'strncpy', inlined from 'PBEparm_parseWRITE' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbeparm.c:1157:9: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBEparm_parseWRITEMAT' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbeparm.c:1198:5: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c: In function 'BEMparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c: In function 'BEMparm_check': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:127:36: warning: unused variable 'nlev' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:127:26: warning: unused variable 'tnlev' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:127:22: warning: unused variable 'ti' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:127:12: warning: unused variable 'tdime' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:127:9: warning: unused variable 'i' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c: In function 'BEMparm_copy': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:176:9: warning: unused variable 'i' [-Wunused-variable] 176 | int i; | ^ [ 21%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.c: In function 'GEOFLOWparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ [ 22%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/apolparm.c [ 23%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmgp.c [ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmgp.c: In function 'Vpmgp_size': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmgp.c:204:87: warning: unused variable 'iretot' [-Wunused-variable] 204 | int nxf, nyf, nzf, level, num_nf_oper, num_narrc_oper, n_band, nc_band, num_band, iretot; | ^~~~~~ [ 26%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/cgd.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'VaccSurf_dtor': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:841:11: warning: variable 'mem' set but not used [-Wunused-but-set-variable] 841 | Vmem *mem; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_splineAccGradAtomNorm3': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1104:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] 1104 | double e, e2, e3, e4, e5; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_atomdSASA': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1338:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] 1338 | time_t ts; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1335:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1335 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSASA': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1395:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1395 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1392:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] 1392 | double *temp_Pos, tRad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1391:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] 1391 | int iatom; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSAV': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1454:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1454 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1451:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] 1451 | double *temp_Pos, tRad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1450:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] 1450 | int iatom; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_wcaEnergyAtom': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1584:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] 1584 | int npts[3]; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_wcaForceAtom': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1807:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] 1807 | time_t ts; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1764:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] 1764 | npts[3], | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/cgd.c: In function 'Vcghs': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/cgd.c:94:24: warning: 'rhok1' may be used uninitialized in this function [-Wmaybe-uninitialized] 94 | beta = rhok2 / rhok1; | ~~~~~~^~~~~~~ [ 27%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c: In function 'Vgsrb': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:62:5: note: in expansion of macro 'MAT2' 62 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c: In function 'Vgsrb7x': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:116: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 116 | #pragma omp parallel for private(i, j, k, ioff) | /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:136: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 136 | #pragma omp parallel for private(i, j, k, ioff) | In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:108:5: note: in expansion of macro 'MAT3' 108 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3' 106 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3' 106 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3' 106 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:105:5: note: in expansion of macro 'MAT3' 105 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:105:5: note: in expansion of macro 'MAT3' 105 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:105:5: note: in expansion of macro 'MAT3' 105 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:104:5: note: in expansion of macro 'MAT3' 104 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:104:5: note: in expansion of macro 'MAT3' 104 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:104:5: note: in expansion of macro 'MAT3' 104 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:103:5: note: in expansion of macro 'MAT3' 103 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:102:5: note: in expansion of macro 'MAT3' 102 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:101:5: note: in expansion of macro 'MAT3' 101 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c: In function 'Vgsrb27x': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:202:5: note: in expansion of macro 'MAT3' 202 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:201:5: note: in expansion of macro 'MAT3' 201 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:200:5: note: in expansion of macro 'MAT3' 200 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:199:5: note: in expansion of macro 'MAT3' 199 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:197:5: note: in expansion of macro 'MAT3' 197 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:196:5: note: in expansion of macro 'MAT3' 196 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:194:5: note: in expansion of macro 'MAT3' 194 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:193:5: note: in expansion of macro 'MAT3' 193 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:188:5: note: in expansion of macro 'MAT3' 188 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3' 186 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3' 186 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3' 186 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:185:5: note: in expansion of macro 'MAT3' 185 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:185:5: note: in expansion of macro 'MAT3' 185 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:185:5: note: in expansion of macro 'MAT3' 185 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:184:5: note: in expansion of macro 'MAT3' 184 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:184:5: note: in expansion of macro 'MAT3' 184 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:184:5: note: in expansion of macro 'MAT3' 184 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:183:5: note: in expansion of macro 'MAT3' 183 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:182:5: note: in expansion of macro 'MAT3' 182 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:181:5: note: in expansion of macro 'MAT3' 181 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:177:9: warning: variable 'istep' set but not used [-Wunused-but-set-variable] 177 | int istep; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:175:17: warning: variable 'k2' set but not used [-Wunused-but-set-variable] 175 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:175:13: warning: variable 'j2' set but not used [-Wunused-but-set-variable] 175 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:175:9: warning: variable 'i2' set but not used [-Wunused-but-set-variable] 175 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:174:17: warning: variable 'k1' set but not used [-Wunused-but-set-variable] 174 | int i1, j1, k1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:174:13: warning: variable 'j1' set but not used [-Wunused-but-set-variable] 174 | int i1, j1, k1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:174:9: warning: variable 'i1' set but not used [-Wunused-but-set-variable] 174 | int i1, j1, k1; | ^~ [ 28%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c [ 30%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/valist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:82:5: note: in expansion of macro 'MAT2' 82 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7_1s': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:110: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 110 | #pragma omp parallel for private(i, j, k) | In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:107:5: note: in expansion of macro 'MAT3' 107 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:106:5: note: in expansion of macro 'MAT3' 106 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:105:5: note: in expansion of macro 'MAT3' 105 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:104:5: note: in expansion of macro 'MAT3' 104 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:103:5: note: in expansion of macro 'MAT3' 103 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:102:5: note: in expansion of macro 'MAT3' 102 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:101:5: note: in expansion of macro 'MAT3' 101 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:134:5: note: in expansion of macro 'MAT2' 134 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27_1s': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:182: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 182 | #pragma omp parallel for private(i, j, k, tmpO, tmpU, tmpD) | In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:179:5: note: in expansion of macro 'MAT3' 179 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:178:5: note: in expansion of macro 'MAT3' 178 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:177:5: note: in expansion of macro 'MAT3' 177 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:176:5: note: in expansion of macro 'MAT3' 176 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:175:5: note: in expansion of macro 'MAT3' 175 | MAT3(uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:174:5: note: in expansion of macro 'MAT3' 174 | MAT3(uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:173:5: note: in expansion of macro 'MAT3' 173 | MAT3(uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:172:5: note: in expansion of macro 'MAT3' 172 | MAT3(uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:171:5: note: in expansion of macro 'MAT3' 171 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:169:5: note: in expansion of macro 'MAT3' 169 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:168:5: note: in expansion of macro 'MAT3' 168 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:167:5: note: in expansion of macro 'MAT3' 167 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:166:5: note: in expansion of macro 'MAT3' 166 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:165:5: note: in expansion of macro 'MAT3' 165 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:163:5: note: in expansion of macro 'MAT3' 163 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:162:5: note: in expansion of macro 'MAT3' 162 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:161:5: note: in expansion of macro 'MAT3' 161 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec7': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:258:5: note: in expansion of macro 'MAT2' 258 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd7_1s': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:296: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 296 | #pragma omp parallel for private(i, j, k) | In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:287:5: note: in expansion of macro 'MAT3' 287 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:286:5: note: in expansion of macro 'MAT3' 286 | MAT3( y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:285:5: note: in expansion of macro 'MAT3' 285 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:284:5: note: in expansion of macro 'MAT3' 284 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:283:5: note: in expansion of macro 'MAT3' 283 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:283:5: note: in expansion of macro 'MAT3' 283 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:283:5: note: in expansion of macro 'MAT3' 283 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:282:5: note: in expansion of macro 'MAT3' 282 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:281:5: note: in expansion of macro 'MAT3' 281 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:280:5: note: in expansion of macro 'MAT3' 280 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec27': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:317:5: note: in expansion of macro 'MAT2' 317 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd27_1s': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:374: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 374 | #pragma omp parallel for private(i, j, k, tmpO, tmpU, tmpD) | In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:365:5: note: in expansion of macro 'MAT3' 365 | MAT3( w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:364:5: note: in expansion of macro 'MAT3' 364 | MAT3( y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:363:5: note: in expansion of macro 'MAT3' 363 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:362:5: note: in expansion of macro 'MAT3' 362 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3' 361 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3' 361 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3' 361 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:360:5: note: in expansion of macro 'MAT3' 360 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:359:5: note: in expansion of macro 'MAT3' 359 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:358:5: note: in expansion of macro 'MAT3' 358 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:357:5: note: in expansion of macro 'MAT3' 357 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:356:5: note: in expansion of macro 'MAT3' 356 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:355:5: note: in expansion of macro 'MAT3' 355 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:354:5: note: in expansion of macro 'MAT3' 354 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:353:5: note: in expansion of macro 'MAT3' 353 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:352:5: note: in expansion of macro 'MAT3' 352 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:351:5: note: in expansion of macro 'MAT3' 351 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:350:5: note: in expansion of macro 'MAT3' 350 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:349:5: note: in expansion of macro 'MAT3' 349 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:348:5: note: in expansion of macro 'MAT3' 348 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmresid7': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:446:5: note: in expansion of macro 'MAT2' 446 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmresid7_1s': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:474: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 474 | #pragma omp parallel for private(i, j, k) | In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:471:5: note: in expansion of macro 'MAT3' 471 | MAT3(r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:470:5: note: in expansion of macro 'MAT3' 470 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:469:5: note: in expansion of macro 'MAT3' 469 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:468:5: note: in expansion of macro 'MAT3' 468 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:467:5: note: in expansion of macro 'MAT3' 467 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:466:5: note: in expansion of macro 'MAT3' 466 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:465:5: note: in expansion of macro 'MAT3' 465 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:464:5: note: in expansion of macro 'MAT3' 464 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmresid27': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:498:5: note: in expansion of macro 'MAT2' 498 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmresid27_1s': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:547: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 547 | #pragma omp parallel for private(i, j, k, tmpO, tmpU, tmpD) | In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:545:5: note: in expansion of macro 'MAT3' 545 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:544:5: note: in expansion of macro 'MAT3' 544 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:543:5: note: in expansion of macro 'MAT3' 543 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:542:5: note: in expansion of macro 'MAT3' 542 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:541:5: note: in expansion of macro 'MAT3' 541 | MAT3(uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:540:5: note: in expansion of macro 'MAT3' 540 | MAT3(uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:539:5: note: in expansion of macro 'MAT3' 539 | MAT3(uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:538:5: note: in expansion of macro 'MAT3' 538 | MAT3(uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:537:5: note: in expansion of macro 'MAT3' 537 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:535:5: note: in expansion of macro 'MAT3' 535 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:534:5: note: in expansion of macro 'MAT3' 534 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:533:5: note: in expansion of macro 'MAT3' 533 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:532:5: note: in expansion of macro 'MAT3' 532 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:531:5: note: in expansion of macro 'MAT3' 531 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:529:5: note: in expansion of macro 'MAT3' 529 | MAT3(r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:528:5: note: in expansion of macro 'MAT3' 528 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:527:5: note: in expansion of macro 'MAT3' 527 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:526:5: note: in expansion of macro 'MAT3' 526 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:618:5: note: in expansion of macro 'MAT2' 618 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7_1s': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' 645 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:644:5: note: in expansion of macro 'MAT3' 644 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:643:5: note: in expansion of macro 'MAT3' 643 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:642:5: note: in expansion of macro 'MAT3' 642 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:641:5: note: in expansion of macro 'MAT3' 641 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:640:5: note: in expansion of macro 'MAT3' 640 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:640:5: note: in expansion of macro 'MAT3' 640 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:640:5: note: in expansion of macro 'MAT3' 640 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:639:5: note: in expansion of macro 'MAT3' 639 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:638:5: note: in expansion of macro 'MAT3' 638 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:637:5: note: in expansion of macro 'MAT3' 637 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:676:5: note: in expansion of macro 'MAT2' 676 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c: In function 'Valist_readPQR': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:618:10: warning: unused variable 'chs' [-Wunused-variable] 618 | char chs[VMAX_BUFSIZE]; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27_1s': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:722:5: note: in expansion of macro 'MAT3' 722 | MAT3( w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:721:5: note: in expansion of macro 'MAT3' 721 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:720:5: note: in expansion of macro 'MAT3' 720 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:719:5: note: in expansion of macro 'MAT3' 719 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:718:5: note: in expansion of macro 'MAT3' 718 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:717:5: note: in expansion of macro 'MAT3' 717 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:716:5: note: in expansion of macro 'MAT3' 716 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:715:5: note: in expansion of macro 'MAT3' 715 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:714:5: note: in expansion of macro 'MAT3' 714 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:713:5: note: in expansion of macro 'MAT3' 713 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:712:5: note: in expansion of macro 'MAT3' 712 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:711:5: note: in expansion of macro 'MAT3' 711 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' 710 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:709:5: note: in expansion of macro 'MAT3' 709 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:708:5: note: in expansion of macro 'MAT3' 708 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:707:5: note: in expansion of macro 'MAT3' 707 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:706:5: note: in expansion of macro 'MAT3' 706 | MAT3( fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:705:5: note: in expansion of macro 'MAT3' 705 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:705:5: note: in expansion of macro 'MAT3' 705 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:705:5: note: in expansion of macro 'MAT3' 705 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:704:5: note: in expansion of macro 'MAT3' 704 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vrestrc': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:781:5: note: in expansion of macro 'MAT2' 781 | MAT2(pc, *nxc * *nyc * *nzc, 1 ); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vrestrc2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:855: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 855 | #pragma omp parallel for private(k, kk, j, jj, i, ii, tmpO, tmpU, tmpD) | In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:847:5: note: in expansion of macro 'MAT3' 847 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:846:5: note: in expansion of macro 'MAT3' 846 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:845:5: note: in expansion of macro 'MAT3' 845 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:844:5: note: in expansion of macro 'MAT3' 844 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:842:5: note: in expansion of macro 'MAT3' 842 | MAT3(dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:841:5: note: in expansion of macro 'MAT3' 841 | MAT3(dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:840:5: note: in expansion of macro 'MAT3' 840 | MAT3(dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:839:5: note: in expansion of macro 'MAT3' 839 | MAT3(dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:838:5: note: in expansion of macro 'MAT3' 838 | MAT3(dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:836:5: note: in expansion of macro 'MAT3' 836 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:835:5: note: in expansion of macro 'MAT3' 835 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:834:5: note: in expansion of macro 'MAT3' 834 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:833:5: note: in expansion of macro 'MAT3' 833 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:831:5: note: in expansion of macro 'MAT3' 831 | MAT3(uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:830:5: note: in expansion of macro 'MAT3' 830 | MAT3(uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:829:5: note: in expansion of macro 'MAT3' 829 | MAT3(uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:828:5: note: in expansion of macro 'MAT3' 828 | MAT3(uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:827:5: note: in expansion of macro 'MAT3' 827 | MAT3(uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:825:5: note: in expansion of macro 'MAT3' 825 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:824:5: note: in expansion of macro 'MAT3' 824 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:823:5: note: in expansion of macro 'MAT3' 823 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:822:5: note: in expansion of macro 'MAT3' 822 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:820:5: note: in expansion of macro 'MAT3' 820 | MAT3(oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:819:5: note: in expansion of macro 'MAT3' 819 | MAT3(oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:818:5: note: in expansion of macro 'MAT3' 818 | MAT3(oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:817:5: note: in expansion of macro 'MAT3' 817 | MAT3(oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:816:5: note: in expansion of macro 'MAT3' 816 | MAT3(oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:814:5: note: in expansion of macro 'MAT3' 814 | MAT3(xout, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:813:5: note: in expansion of macro 'MAT3' 813 | MAT3(xin, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:811:12: warning: variable 'dimfac' set but not used [-Wunused-but-set-variable] 811 | double dimfac; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:915:5: note: in expansion of macro 'MAT2' 915 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:977:5: note: in expansion of macro 'MAT3' 977 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:976:5: note: in expansion of macro 'MAT3' 976 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:975:5: note: in expansion of macro 'MAT3' 975 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:974:5: note: in expansion of macro 'MAT3' 974 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:972:5: note: in expansion of macro 'MAT3' 972 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:971:5: note: in expansion of macro 'MAT3' 971 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:970:5: note: in expansion of macro 'MAT3' 970 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:969:5: note: in expansion of macro 'MAT3' 969 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:968:5: note: in expansion of macro 'MAT3' 968 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:966:5: note: in expansion of macro 'MAT3' 966 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:965:5: note: in expansion of macro 'MAT3' 965 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:964:5: note: in expansion of macro 'MAT3' 964 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:963:5: note: in expansion of macro 'MAT3' 963 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:961:5: note: in expansion of macro 'MAT3' 961 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:960:5: note: in expansion of macro 'MAT3' 960 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:959:5: note: in expansion of macro 'MAT3' 959 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:958:5: note: in expansion of macro 'MAT3' 958 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:957:5: note: in expansion of macro 'MAT3' 957 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:955:5: note: in expansion of macro 'MAT3' 955 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:954:5: note: in expansion of macro 'MAT3' 954 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:953:5: note: in expansion of macro 'MAT3' 953 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:952:5: note: in expansion of macro 'MAT3' 952 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:950:5: note: in expansion of macro 'MAT3' 950 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:949:5: note: in expansion of macro 'MAT3' 949 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:948:5: note: in expansion of macro 'MAT3' 948 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:947:5: note: in expansion of macro 'MAT3' 947 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:946:5: note: in expansion of macro 'MAT3' 946 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_oPC' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:946:5: note: in expansion of macro 'MAT3' 946 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_oPC' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:946:5: note: in expansion of macro 'MAT3' 946 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:944:5: note: in expansion of macro 'MAT3' 944 | MAT3(xout, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:943:5: note: in expansion of macro 'MAT3' 943 | MAT3( xin, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vextrac': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:1081:5: note: in expansion of macro 'MAT3' 1081 | MAT3(xout, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:1080:5: note: in expansion of macro 'MAT3' 1080 | MAT3( xin, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c: In function 'Valist_readXML': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:834:17: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized] 834 | Vatom_setRadius(nextAtom, radius); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:833:17: warning: 'charge' may be used uninitialized in this function [-Wmaybe-uninitialized] 833 | Vatom_setCharge(nextAtom, charge); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:831:48: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:831:36: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:831:24: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ [ 31%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vatom.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' [ 31%] Built target apbs_mg [ 32%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vpbe.c [ 33%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vcap.c [ 35%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c [ 36%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vclist.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c: In function 'Vmvcs': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c:94:5: note: in expansion of macro 'MAT2' 94 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c:298:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] 298 | Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c:557:37: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] 557 | } while (*iters<*itmax && (rsnrm/rsden) > *errtol); | ~~~~~~^~~~~~~ [ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c [ 38%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vstring.c [ 40%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vparam.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:80:9: warning: unused variable 'ierror' [-Wunused-variable] 80 | int ierror = 0; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.h:62, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:262:5: note: in expansion of macro 'MAT2' 262 | MAT2(iz, 50, nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:229:12: warning: unused variable 'tsolve' [-Wunused-variable] 229 | double tsolve = 0.0; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:228:12: warning: unused variable 'tsetupc' [-Wunused-variable] 228 | double tsetupc = 0.0; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:227:12: warning: unused variable 'tsetupf' [-Wunused-variable] 227 | double tsetupf = 0.0; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:226:12: warning: unused variable 'oh' [-Wunused-variable] 226 | double oh = 0.0; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:225:12: warning: unused variable 'bf' [-Wunused-variable] 225 | double bf = 0.0; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:221:12: warning: unused variable 'epsmac' [-Wunused-variable] 221 | double epsmac = 0.0; | ^~~~~~ [ 41%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c: In function 'Vmgsz': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:650:26: warning: 'num_narrc_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] 650 | + (num_narrc + num_narrc_oper) * *narrc | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:651:13: warning: 'n_band' may be used uninitialized in this function [-Wmaybe-uninitialized] 648 | *iretot = num_narr * *narr | ~~~~~~~~~~~~~~~~ 649 | + (num_nf + num_nf_oper) * *nf | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 | + (num_narrc + num_narrc_oper) * *narrc | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 | + n_band | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:649:41: warning: 'num_nf_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] 649 | + (num_nf + num_nf_oper) * *nf | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb_direct': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:229:31: warning: unused variable 'fz' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:229:27: warning: unused variable 'fy' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:229:23: warning: unused variable 'fx' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:229:16: warning: unused variable 'qtemp' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:229:13: warning: unused variable 'q' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:264:9: warning: unused variable 'iatom' [-Wunused-variable] 264 | int iatom, ipos; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:263:31: warning: unused variable 'fz' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:263:27: warning: unused variable 'fy' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:263:23: warning: unused variable 'fx' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:263:16: warning: unused variable 'qtemp' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:263:13: warning: unused variable 'q' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:45: warning: unused variable 'scale' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:41: warning: unused variable 'dz' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:37: warning: unused variable 'dy' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:33: warning: unused variable 'dx' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:27: warning: unused variable 'dist' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:19: warning: unused variable 'charge' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:13: warning: unused variable 'apos' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:261:12: warning: unused variable 'atom' [-Wunused-variable] 261 | Vatom *atom; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD_direct': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:316:16: warning: unused variable 'qtemp' [-Wunused-variable] 316 | double *q, qtemp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:316:13: warning: unused variable 'q' [-Wunused-variable] 316 | double *q, qtemp; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:368:9: warning: unused variable 'iatom' [-Wunused-variable] 368 | int iatom, ipos; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:367:16: warning: unused variable 'qtemp' [-Wunused-variable] 367 | double *q, qtemp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:367:13: warning: unused variable 'q' [-Wunused-variable] 367 | double *q, qtemp; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:60: warning: unused variable 'scale' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:56: warning: unused variable 'dx' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:52: warning: unused variable 'dz' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:48: warning: unused variable 'dy' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:40: warning: unused variable 'idist3' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:33: warning: unused variable 'dist2' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:27: warning: unused variable 'dist' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:19: warning: unused variable 'charge' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:13: warning: unused variable 'apos' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:365:12: warning: unused variable 'atom' [-Wunused-variable] 365 | Vatom *atom; | ^~~~ At top level: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:525:14: warning: 'treecalc' defined but not used [-Wunused-function] 525 | VPRIVATE int treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar, | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:505:14: warning: 'treecleanup' defined but not used [-Wunused-function] 505 | VPRIVATE int treecleanup(Vgreen *thee) { | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:425:14: warning: 'treesetup' defined but not used [-Wunused-function] 425 | VPRIVATE int treesetup(Vgreen *thee) { | ^~~~~~~~~ [ 42%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vparam.c: In function 'Vparam_readXMLFile': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vparam.c:389:69: warning: 'nalloc' may be used uninitialized in this function [-Wmaybe-uninitialized] 389 | tatoms = (Vparam_AtomData*)Vmem_malloc(thee->vmem, 2*nalloc, sizeof(Vparam_AtomData)); | ~^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vparam.c:309:18: warning: 'natoms' may be used uninitialized in this function [-Wmaybe-uninitialized] 309 | int i, ires, natoms, nalloc, ralloc; | ^~~~~~ [ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c: In function 'Vbuildops': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:78:5: note: in expansion of macro 'MAT2' 78 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c: In function 'Vbuildstr': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:261:5: note: in expansion of macro 'MAT2' 261 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c: In function 'Vbuildcopy0': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:623:5: note: in expansion of macro 'MAT3' 623 | MAT3( fcf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:622:5: note: in expansion of macro 'MAT3' 622 | MAT3( ccf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:621:5: note: in expansion of macro 'MAT3' 621 | MAT3( tcf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:620:5: note: in expansion of macro 'MAT3' 620 | MAT3(a3cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:619:5: note: in expansion of macro 'MAT3' 619 | MAT3(a2cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:618:5: note: in expansion of macro 'MAT3' 618 | MAT3(a1cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:617:5: note: in expansion of macro 'MAT3' 617 | MAT3(gzcf, *nxf, *nyf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:616:5: note: in expansion of macro 'MAT3' 616 | MAT3(gycf, *nxf, *nzf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:615:5: note: in expansion of macro 'MAT3' 615 | MAT3(gxcf, *nyf, *nzf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:614:5: note: in expansion of macro 'MAT3' 614 | MAT3( tc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:613:5: note: in expansion of macro 'MAT3' 613 | MAT3( fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:612:5: note: in expansion of macro 'MAT3' 612 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:611:5: note: in expansion of macro 'MAT3' 611 | MAT3( a3c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:610:5: note: in expansion of macro 'MAT3' 610 | MAT3( a2c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:609:5: note: in expansion of macro 'MAT3' 609 | MAT3( a1c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:608:5: note: in expansion of macro 'MAT3' 608 | MAT3( gzc, *nx, *ny, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:607:5: note: in expansion of macro 'MAT3' 607 | MAT3( gyc, *nx, *nz, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:606:5: note: in expansion of macro 'MAT3' 606 | MAT3( gxc, *ny, *nz, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c: In function 'Vbuildalg': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:909:5: note: in expansion of macro 'MAT2' 909 | MAT2(iz, 50, *nlev); | ^~~~ [ 43%] Built target apbs_generic [ 45%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:61: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 61 | #pragma omp parallel for private(i,j,k) | In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:55:5: note: in expansion of macro 'MAT3' 55 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:54:5: note: in expansion of macro 'MAT3' 54 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_small': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:73:5: note: in expansion of macro 'MAT3' 73 | MAT3(y, *nx - 2, *ny - 2, *nz - 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:72:5: note: in expansion of macro 'MAT3' 72 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_large': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:94:5: note: in expansion of macro 'MAT3' 94 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:93:5: note: in expansion of macro 'MAT3' 93 | MAT3(x, *nx - 2, *ny - 2, *nz - 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxaxpy': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:112:5: note: in expansion of macro 'MAT3' 112 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm1': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:131:5: note: in expansion of macro 'MAT3' 131 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:152:5: note: in expansion of macro 'MAT3' 152 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxdot': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:177:5: note: in expansion of macro 'MAT3' 177 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:176:5: note: in expansion of macro 'MAT3' 176 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vazeros': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:197: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 197 | #pragma omp parallel for private(i) | /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:193:9: warning: unused variable 'nproc' [-Wunused-variable] 193 | int nproc = 1; | ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:213:5: note: in expansion of macro 'MAT3' 213 | MAT3(gzc, *nx, *ny, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:212:5: note: in expansion of macro 'MAT3' 212 | MAT3(gyc, *nx, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:211:5: note: in expansion of macro 'MAT3' 211 | MAT3(gxc, *ny, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:210:5: note: in expansion of macro 'MAT3' 210 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG00': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:257:5: note: in expansion of macro 'MAT3' 257 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vaxrand': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:290:12: warning: variable 'xdum' set but not used [-Wunused-but-set-variable] 290 | double xdum; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:288:33: warning: variable 'iflag' set but not used [-Wunused-but-set-variable] 288 | int n, i, ii, ipara, ivect, iflag; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:288:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] 288 | int n, i, ii, ipara, ivect, iflag; | ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxscal': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:317:5: note: in expansion of macro 'MAT3' 317 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:332:5: note: in expansion of macro 'MAT2' 332 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd7': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:365:5: note: in expansion of macro 'MAT3' 365 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:364:5: note: in expansion of macro 'MAT3' 364 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:363:5: note: in expansion of macro 'MAT3' 363 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:362:5: note: in expansion of macro 'MAT3' 362 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd27': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:410:5: note: in expansion of macro 'MAT3' 410 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:409:5: note: in expansion of macro 'MAT3' 409 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:408:5: note: in expansion of macro 'MAT3' 408 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:407:5: note: in expansion of macro 'MAT3' 407 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:406:5: note: in expansion of macro 'MAT3' 406 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:405:5: note: in expansion of macro 'MAT3' 405 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:404:5: note: in expansion of macro 'MAT3' 404 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:403:5: note: in expansion of macro 'MAT3' 403 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:402:5: note: in expansion of macro 'MAT3' 402 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:401:5: note: in expansion of macro 'MAT3' 401 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:400:5: note: in expansion of macro 'MAT3' 400 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:399:5: note: in expansion of macro 'MAT3' 399 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:398:5: note: in expansion of macro 'MAT3' 398 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:397:5: note: in expansion of macro 'MAT3' 397 | MAT3( oC, *nx, *ny, *nz); | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbsl': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c:57:5: note: in expansion of macro 'MAT2' 57 | MAT2(abd, *lda, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbfa': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c:194:5: note: in expansion of macro 'MAT2' 194 | MAT2(abd, *lda, 1); | ^~~~ [ 46%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vmypdefinitsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:91:9: warning: unused variable 'i' [-Wunused-variable] 91 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vc_vecpmg': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:161: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 161 | #pragma omp parallel for \ | /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vc_vecsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:218:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] 218 | int n, i, ii, ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:218:19: warning: variable 'ipara' set but not used [-Wunused-but-set-variable] 218 | int n, i, ii, ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:218:15: warning: unused variable 'ii' [-Wunused-variable] 218 | int n, i, ii, ipara, ivect; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:217:9: warning: unused variable 'iion' [-Wunused-variable] 217 | int iion; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:214:28: warning: unused variable 'fact' [-Wunused-variable] 214 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:214:22: warning: unused variable 'poly' [-Wunused-variable] 214 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:214:12: warning: unused variable 'argument' [-Wunused-variable] 214 | double argument, poly, fact; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:213:29: warning: unused variable 'am_pos' [-Wunused-variable] 213 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:213:21: warning: unused variable 'am_neg' [-Wunused-variable] 213 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:212:18: warning: unused variable 'zu2' [-Wunused-variable] 212 | double zcf2, zu2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:212:12: warning: unused variable 'zcf2' [-Wunused-variable] 212 | double zcf2, zu2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:211:9: warning: unused variable 'ideg' [-Wunused-variable] 211 | int ideg; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vdc_vec': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:340:9: warning: unused variable 'n' [-Wunused-variable] 340 | int n = *nx * *ny * *nz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:339:9: warning: unused variable 'i' [-Wunused-variable] 339 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecpmg': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:378: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 378 | #pragma omp parallel for \ | /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:355:28: warning: unused variable 'fact' [-Wunused-variable] 355 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:355:22: warning: unused variable 'poly' [-Wunused-variable] 355 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:352:9: warning: unused variable 'ideg' [-Wunused-variable] 352 | int ideg, iion; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:428:16: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] 428 | int ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:428:9: warning: variable 'ipara' set but not used [-Wunused-but-set-variable] 428 | int ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:427:15: warning: unused variable 'ii' [-Wunused-variable] 427 | int n, i, ii; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:424:28: warning: unused variable 'fact' [-Wunused-variable] 424 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:424:22: warning: unused variable 'poly' [-Wunused-variable] 424 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:424:12: warning: unused variable 'argument' [-Wunused-variable] 424 | double argument, poly, fact; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:423:29: warning: unused variable 'am_pos' [-Wunused-variable] 423 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:423:21: warning: unused variable 'am_neg' [-Wunused-variable] 423 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:422:18: warning: unused variable 'zu2' [-Wunused-variable] 422 | double zcf2, zu2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:422:12: warning: unused variable 'zcf2' [-Wunused-variable] 422 | double zcf2, zu2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:421:15: warning: unused variable 'iion' [-Wunused-variable] 421 | int ideg, iion; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:421:9: warning: unused variable 'ideg' [-Wunused-variable] 421 | int ideg, iion; | ^~~~ [ 47%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c [ 48%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c:56: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c: In function 'Vfnewton': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c:77:5: note: in expansion of macro 'MAT2' 77 | MAT2( iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c: In function 'Vnewton': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c:187:5: note: in expansion of macro 'MAT2' 187 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c: In function 'Vgetjac': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c:560:5: note: in expansion of macro 'MAT2' 560 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:81:9: warning: unused variable 'maxlev' [-Wunused-variable] 81 | int maxlev; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:80:9: warning: unused variable 'ierror' [-Wunused-variable] 80 | int ierror; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv2': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:218:9: warning: unused variable 'i' [-Wunused-variable] 218 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:216:12: warning: unused variable 'orsnrm_t' [-Wunused-variable] 216 | double orsnrm_t; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:215:12: warning: unused variable 'rsden_t' [-Wunused-variable] 215 | double rsden_t; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:214:12: warning: unused variable 'rsnrm_t' [-Wunused-variable] 214 | double rsnrm_t; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:213:9: warning: unused variable 'iters_t' [-Wunused-variable] 213 | int iters_t; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:212:9: warning: unused variable 'iok_t' [-Wunused-variable] 212 | int iok_t; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:210:9: warning: unused variable 'numlev' [-Wunused-variable] 210 | int numlev; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:205:12: warning: unused variable 'tsolve' [-Wunused-variable] 205 | double tsolve; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:204:12: warning: unused variable 'tsetupc' [-Wunused-variable] 204 | double tsetupc; /// @todo: Doc | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:203:12: warning: unused variable 'tsetupf' [-Wunused-variable] 203 | double tsetupf; /// @todo: Doc | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:202:12: warning: unused variable 'oh' [-Wunused-variable] 202 | double oh; /// @todo: Doc | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:201:12: warning: unused variable 'bf' [-Wunused-variable] 201 | double bf; /// @todo: Doc | ^~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:199:12: warning: variable 'omegal' set but not used [-Wunused-but-set-variable] 199 | double omegal; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:197:12: warning: unused variable 'epsmac' [-Wunused-variable] 197 | double epsmac; /// @todo: Doc | ^~~~~~ [ 50%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c [ 51%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/smoothd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c: In function 'Vpower': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:69:5: note: in expansion of macro 'MAT2' 69 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:66:9: warning: unused variable 'skipIters' [-Wunused-variable] 66 | int skipIters = 0; | ^~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c: In function 'Vipower': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:183:5: note: in expansion of macro 'MAT2' 183 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c: In function 'Vmpower': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:306:5: note: in expansion of macro 'MAT2' 306 | MAT2(iz, 50, 1); | ^~~~ [ 52%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/smoothd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c: In function 'Vfmvfas': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:74:5: note: in expansion of macro 'MAT2' 74 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:69:12: warning: variable 'errd' set but not used [-Wunused-but-set-variable] 69 | double errd; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/smoothd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:50: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c: In function 'Vmvfas': /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:177:5: note: in expansion of macro 'MAT2' 177 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:166:33: warning: unused variable 'ivariv' [-Wunused-variable] 166 | int itmax_s, iters_s, nuuu, ivariv, mgsmoo_s, iresid; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:354:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] 354 | Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:592:24: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] 592 | if ((rsnrm / rsden) <= *errtol) | ~~~~~~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' [ 52%] Built target apbs_pmgc make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs && /usr/bin/cmake 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make[2]: *** [src/CMakeFiles/apbs.dir/build.make:154: lib/libapbs.so.1] Error 1 make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs' make[1]: *** [CMakeFiles/Makefile2:309: src/CMakeFiles/apbs.dir/all] Error 2 make: *** [Makefile:133: all] Error 2 error: Bad exit status from /var/tmp/rpm-tmp.BuAJVK (%build) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.BuAJVK (%build) Child return code was: 1 EXCEPTION: [Error()] Traceback (most recent call last): File "/usr/lib/python3.8/site-packages/mockbuild/trace_decorator.py", line 95, in trace result = func(*args, **kw) File "/usr/lib/python3.8/site-packages/mockbuild/util.py", line 746, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec