Mock Version: 1.4.13 Mock Version: 1.4.13 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/f30-build-40870-22847/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/staden-io_lib-1.12.4-15.fc30.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/f30-build-40870-22847/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=996gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.QkJYTL + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf io_lib-1.12.4 + /usr/bin/gzip -dc /builddir/build/SOURCES/io_lib-1.12.4.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd io_lib-1.12.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + mv io_lib-config.in staden-io_lib-config.in + sed -i s/libread/libstaden-read/g io_lib/Makefile.in progs/Makefile.in + sed -i s/lread/lstaden-read/ staden-io_lib-config.in + sed -i s/io_lib-config/staden-io_lib-config/g configure Makefile.in + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.mCoKc0 + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess BUILDSTDERR: ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub BUILDSTDERR: ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for riscv64-koji-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking build system type... riscv64-koji-linux-gnu checking host system type... riscv64-koji-linux-gnu checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for riscv64-koji-linux-gnu-g++... no checking for riscv64-koji-linux-gnu-c++... no checking for riscv64-koji-linux-gnu-gpp... no checking for riscv64-koji-linux-gnu-aCC... no checking for riscv64-koji-linux-gnu-CC... no checking for riscv64-koji-linux-gnu-cxx... no checking for riscv64-koji-linux-gnu-cc++... no checking for riscv64-koji-linux-gnu-cl.exe... no checking for riscv64-koji-linux-gnu-FCC... no checking for riscv64-koji-linux-gnu-KCC... no checking for riscv64-koji-linux-gnu-RCC... no checking for riscv64-koji-linux-gnu-xlC_r... no checking for riscv64-koji-linux-gnu-xlC... no checking for g++... no checking for c++... no checking for gpp... no checking for aCC... no checking for CC... no checking for cxx... no checking for cc++... no checking for cl.exe... no checking for FCC... no checking for KCC... no checking for RCC... no checking for xlC_r... no checking for xlC... no checking whether we are using the GNU C++ compiler... no checking whether g++ accepts -g... no checking dependency style of g++... none checking for riscv64-koji-linux-gnu-g77... no checking for riscv64-koji-linux-gnu-xlf... no checking for riscv64-koji-linux-gnu-f77... no checking for riscv64-koji-linux-gnu-frt... no checking for riscv64-koji-linux-gnu-pgf77... no checking for riscv64-koji-linux-gnu-cf77... no checking for riscv64-koji-linux-gnu-fort77... no checking for riscv64-koji-linux-gnu-fl32... no checking for riscv64-koji-linux-gnu-af77... no checking for riscv64-koji-linux-gnu-xlf90... no checking for riscv64-koji-linux-gnu-f90... no checking for riscv64-koji-linux-gnu-pgf90... no checking for riscv64-koji-linux-gnu-pghpf... no checking for riscv64-koji-linux-gnu-epcf90... no checking for riscv64-koji-linux-gnu-gfortran... no checking for riscv64-koji-linux-gnu-g95... no checking for riscv64-koji-linux-gnu-xlf95... no checking for riscv64-koji-linux-gnu-f95... no checking for riscv64-koji-linux-gnu-fort... no checking for riscv64-koji-linux-gnu-ifort... no checking for riscv64-koji-linux-gnu-ifc... no checking for riscv64-koji-linux-gnu-efc... no checking for riscv64-koji-linux-gnu-pgf95... no checking for riscv64-koji-linux-gnu-lf95... no checking for riscv64-koji-linux-gnu-ftn... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for riscv64-koji-linux-gnu-ar... no checking for ar... ar checking for riscv64-koji-linux-gnu-ranlib... no checking for ranlib... ranlib checking for riscv64-koji-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no BUILDSTDERR: checking dynamic linker characteristics... cat: 'ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool appending configuration tag "F77" to libtool host=riscv64-koji-linux-gnu Fixing libtool for -rpath problems. checking for gawk... (cached) gawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 7.61.1 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking whether byte ordering is bigendian... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking for inline... inline checking for mode_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for library containing cos... -lm checking for strdup... yes configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating staden-io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands + sed -i 's+\(search_path_spec="\)+\1/lib64 /usr/lib64 +' libtool + make -j4 make all-recursive make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' Making all in io_lib make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c mkdir .libs gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c translate.c -fPIC -DPIC -o .libs/libstaden_read_la-translate.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c compression.c -fPIC -DPIC -o .libs/libstaden_read_la-compression.o BUILDSTDERR: translate.c: In function 'read2exp': BUILDSTDERR: translate.c:292:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (p = strrchr(EN, '/')) BUILDSTDERR: ^ BUILDSTDERR: translate.c:302:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (cp = strrchr(read->trace_name, '/')) BUILDSTDERR: ^~ BUILDSTDERR: translate.c: In function 'exp2read': BUILDSTDERR: translate.c:650:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (fp = open_trace_file(exp_get_entry(e, EFLT_LN), fn)) { BUILDSTDERR: ^~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o BUILDSTDERR: ztr.c: In function 'mfread_ztr': BUILDSTDERR: ztr.c:335:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while (chunk = ztr_read_chunk_hdr(fp)) { BUILDSTDERR: ^~~~~ BUILDSTDERR: ztr_translate.c:335:14: warning: 'ztr_encode_confidence_1' defined but not used [-Wunused-function] BUILDSTDERR: static char *ztr_encode_confidence_1(ztr_t *z, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:182:14: warning: 'ztr_encode_samples_T' defined but not used [-Wunused-function] BUILDSTDERR: static char *ztr_encode_samples_T(ztr_t *z, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:175:14: warning: 'ztr_encode_samples_G' defined but not used [-Wunused-function] BUILDSTDERR: static char *ztr_encode_samples_G(ztr_t *z, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:168:14: warning: 'ztr_encode_samples_C' defined but not used [-Wunused-function] BUILDSTDERR: static char *ztr_encode_samples_C(ztr_t *z, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:161:14: warning: 'ztr_encode_samples_A' defined but not used [-Wunused-function] BUILDSTDERR: static char *ztr_encode_samples_A(ztr_t *z, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c deflate_interlaced.c -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o BUILDSTDERR: deflate_interlaced.c: In function 'calc_bit_lengths': BUILDSTDERR: deflate_interlaced.c:516:9: warning: variable 'map' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int map[258]; BUILDSTDERR: ^~~ BUILDSTDERR: deflate_interlaced.c: In function 'huffman_multi_decode': BUILDSTDERR: deflate_interlaced.c:1760:9: warning: variable 'nc' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int nc; BUILDSTDERR: ^~ BUILDSTDERR: deflate_interlaced.c:1759:23: warning: variable 'c' set but not used [-Wunused-but-set-variable] BUILDSTDERR: huffman_codes_t **c; BUILDSTDERR: ^ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fpoint.c -fPIC -DPIC -o .libs/libstaden_read_la-fpoint.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOABI.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOABI.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOALF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o BUILDSTDERR: seqIOABI.c: In function 'getABIString': BUILDSTDERR: seqIOABI.c:259:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (off = getABIIndexEntryLW(fp, indexO, label, count, 4, &len)) { BUILDSTDERR: ^~~ BUILDSTDERR: seqIOABI.c: In function 'mfread_abi': BUILDSTDERR: seqIOABI.c:657:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (p = strchr(commstrp, '\n')) BUILDSTDERR: ^ BUILDSTDERR: seqIOABI.c:662:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: } while(commstrp = p); BUILDSTDERR: ^~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ctfCompress.lo `test -f 'ctfCompress.c' || echo './'`ctfCompress.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOCTF.lo `test -f 'seqIOCTF.c' || echo './'`seqIOCTF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ctfCompress.c -fPIC -DPIC -o .libs/libstaden_read_la-ctfCompress.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOCTF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOCTF.o BUILDSTDERR: ctfCompress.c: In function 'ctfCompress2': BUILDSTDERR: ctfCompress.c:270:80: warning: format '%d' expects argument of type 'int', but argument 7 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n", BUILDSTDERR: ~^ BUILDSTDERR: %ld BUILDSTDERR: ctfCompress.c:270:92: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n", BUILDSTDERR: ~^ BUILDSTDERR: %ld BUILDSTDERR: ctfCompress.c: In function 'ctfCompress3': BUILDSTDERR: ctfCompress.c:607:116: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: printf (" // compress3:\n// %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n", BUILDSTDERR: ~^ BUILDSTDERR: %ld BUILDSTDERR: ctfCompress.c:607:128: warning: format '%d' expects argument of type 'int', but argument 9 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: printf (" // compress3:\n// %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n", BUILDSTDERR: ~^ BUILDSTDERR: %ld /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo './'`expFileIO.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c expFileIO.c -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-misc_scf.lo `test -f 'misc_scf.c' || echo './'`misc_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOPlain.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOPlain.o BUILDSTDERR: expFileIO.c: In function 'exp_print_mline': BUILDSTDERR: expFileIO.c:198:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (c = strchr(p, '\n')) BUILDSTDERR: ^ BUILDSTDERR: expFileIO.c:207:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (c = strchr(p, '\n')) { BUILDSTDERR: ^ BUILDSTDERR: expFileIO.c: In function 'opos2str': BUILDSTDERR: expFileIO.c:393:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] BUILDSTDERR: if (dir == 0) BUILDSTDERR: ^ BUILDSTDERR: seqIOPlain.c: In function 'mfread_pln': BUILDSTDERR: seqIOPlain.c:150:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (p = strchr(type, ' ')) BUILDSTDERR: ^ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c misc_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c BUILDSTDERR: In file included from misc_scf.c:33: BUILDSTDERR: misc_scf.c: In function 'is_scf': BUILDSTDERR: ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: ^~ BUILDSTDERR: misc_scf.c:151:19: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: ok = (magic==SCF_MAGIC); BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: ^~ BUILDSTDERR: misc_scf.c:151:19: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: ok = (magic==SCF_MAGIC); BUILDSTDERR: ^~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c read_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o BUILDSTDERR: In file included from ../io_lib/Read.h:44, BUILDSTDERR: from read_scf.c:46: BUILDSTDERR: read_scf.c: In function 'read_scf_header': BUILDSTDERR: ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: ^~ BUILDSTDERR: read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: if (h->magic_number != SCF_MAGIC) return -1; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: ^~ BUILDSTDERR: read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: if (h->magic_number != SCF_MAGIC) return -1; BUILDSTDERR: ^~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c write_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o BUILDSTDERR: In file included from write_scf.c:60: BUILDSTDERR: write_scf.c: In function 'mfwrite_scf': BUILDSTDERR: ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: ^~ BUILDSTDERR: write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: scf->header.magic_number = SCF_MAGIC; BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: ^~ BUILDSTDERR: write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: scf->header.magic_number = SCF_MAGIC; BUILDSTDERR: ^~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sff.c -fPIC -DPIC -o .libs/libstaden_read_la-sff.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf.c -fPIC -DPIC -o .libs/libstaden_read_la-srf.o BUILDSTDERR: srf.c: In function 'get_hi_bits': BUILDSTDERR: srf.c:1106:59: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] BUILDSTDERR: val = (block->data[block->byte]) & (1<<(8-block->bit))-1; BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~^~ BUILDSTDERR: srf.c:1126:21: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] BUILDSTDERR: & (1<<(nbits-bnum))-1; BUILDSTDERR: ~~~~~~~~~~~~~~~~~^~ BUILDSTDERR: srf.c: In function 'pack_trace_suffix': BUILDSTDERR: srf.c:1383:10: warning: variable 'width' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int width = 0; BUILDSTDERR: ^~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c array.c -fPIC -DPIC -o .libs/libstaden_read_la-array.o BUILDSTDERR: srf.c: In function 'partial_decode_ztr': BUILDSTDERR: srf.c:1604:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while (chunk = ztr_read_chunk_hdr(mf)) { BUILDSTDERR: ^~~~~ BUILDSTDERR: srf.c: In function 'srf_find_trace': BUILDSTDERR: srf.c:2025:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(dpos, 1, item_sz, srf->fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c compress.c -fPIC -DPIC -o .libs/libstaden_read_la-compress.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c error.c -fPIC -DPIC -o .libs/libstaden_read_la-error.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c files.c -fPIC -DPIC -o .libs/libstaden_read_la-files.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c find.c -fPIC -DPIC -o .libs/libstaden_read_la-find.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mach-io.c -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c open_trace_file.c -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c read_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-read_alloc.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c BUILDSTDERR: open_trace_file.c: In function 'find_file_tar': BUILDSTDERR: open_trace_file.c:143:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (cp = strchr(path, '\n')) BUILDSTDERR: ^~ BUILDSTDERR: open_trace_file.c: In function 'sff_hash_query': BUILDSTDERR: open_trace_file.c:537:14: warning: assignment to 'FILE **' {aka 'struct _IO_FILE **'} from incompatible pointer type 'FILE *' {aka 'struct _IO_FILE *'} [-Wincompatible-pointer-types] BUILDSTDERR: hf->afp = hf->hfp = NULL; /* will be closed by our parent */ BUILDSTDERR: ^ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c BUILDSTDERR: open_trace_file.c:530:18: warning: variable 'fp_copy' set but not used [-Wunused-but-set-variable] BUILDSTDERR: static FILE *fp_copy = NULL; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: open_trace_file.c: In function 'find_file_sff': BUILDSTDERR: open_trace_file.c:748:14: warning: variable 'nkey' set but not used [-Wunused-but-set-variable] BUILDSTDERR: uint32_t nkey, nflows, chdrlen, rhdrlen, dlen, magic; BUILDSTDERR: ^~~~ BUILDSTDERR: open_trace_file.c: In function 'find_file_dir': BUILDSTDERR: open_trace_file.c:914:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (cp = strrchr(file, '/')) { BUILDSTDERR: ^~ BUILDSTDERR: open_trace_file.c: In function 'open_path_mfile': BUILDSTDERR: open_trace_file.c:1087:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (cp = strrchr(relative_path, '/')) BUILDSTDERR: ^~ BUILDSTDERR: open_trace_file.c:1089:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (fp = find_file_dir(file, relative_path)) BUILDSTDERR: ^~ BUILDSTDERR: open_trace_file.c: In function 'find_file_sff': BUILDSTDERR: open_trace_file.c:798:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(index_format, 1, 8, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: open_trace_file.c: In function 'find_file_dir': BUILDSTDERR: open_trace_file.c:929:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(magic, 1, 4, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: open_trace_file.c:940:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(magic, 1, 8, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: open_trace_file.c:950:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(magic, 1, 5, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c strings.c -fPIC -DPIC -o .libs/libstaden_read_la-strings.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c traceType.c -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o BUILDSTDERR: open_trace_file.c: In function 'sff_sorted_query': BUILDSTDERR: open_trace_file.c:704:5: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: fseek(fp, offset, SEEK_SET); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c xalloc.c -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c vlen.c -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c BUILDSTDERR: vlen.c: In function 'vflen': BUILDSTDERR: vlen.c:86:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: for(; c=*++cp;) { BUILDSTDERR: ^ BUILDSTDERR: vlen.c:57:9: warning: variable 'i' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int i; BUILDSTDERR: ^ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_table.c -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c jenkins_lookup3.c -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o BUILDSTDERR: hash_table.c: In function 'HashFileFopen': BUILDSTDERR: hash_table.c:1140:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(hf->archives[i], 1, fnamelen, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1156:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&hf->headers[i].pos, 8, 1, hf->hfp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1157:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&hf->headers[i].size, 4, 1, hf->hfp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1169:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&hf->footers[i].pos, 8, 1, hf->hfp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1170:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&hf->footers[i].size, 4, 1, hf->hfp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c: In function 'HashFileQuery': BUILDSTDERR: hash_table.c:1368:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(k, klen, 1, hf->hfp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1369:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&headfoot, 1, 1, hf->hfp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1372:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&pos, 8, 1, hf->hfp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1376:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&size, 4, 1, hf->hfp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c: In function 'HashFileExtract': BUILDSTDERR: hash_table.c:1506:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&data[pos], head->size, 1, hf->afp[head->archive_no]); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1516:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&data[pos], hfi.size, 1, hf->afp[hfi.archive]); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1526:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(&data[pos], foot->size, 1, hf->afp[foot->archive_no]); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: jenkins_lookup3.c:654:17: warning: 'hashbig' defined but not used [-Wunused-function] BUILDSTDERR: static uint32_t hashbig( const void *key, size_t length, uint32_t initval) BUILDSTDERR: ^~~~~~~ BUILDSTDERR: jenkins_lookup3.c:288:17: warning: 'hashlittle' defined but not used [-Wunused-function] BUILDSTDERR: static uint32_t hashlittle( const void *key, size_t length, uint32_t initval) BUILDSTDERR: ^~~~~~~~~~ BUILDSTDERR: jenkins_lookup3.c:223:13: warning: 'hashword2' defined but not used [-Wunused-function] BUILDSTDERR: static void hashword2 ( BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: jenkins_lookup3.c:179:17: warning: 'hashword' defined but not used [-Wunused-function] BUILDSTDERR: static uint32_t hashword( BUILDSTDERR: ^~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mFILE.c -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c BUILDSTDERR: mFILE.c: In function 'mfreopen': BUILDSTDERR: mFILE.c:194:16: warning: variable 'w' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int r = 0, w = 0, a = 0, b = 0, x = 0, mode = 0; BUILDSTDERR: ^ BUILDSTDERR: mFILE.c: In function 'mfflush': BUILDSTDERR: mFILE.c:487:10: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] BUILDSTDERR: if (!mf->mode & MF_MODEX) BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: mFILE.c:493:2: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: ftruncate(fileno(mf->fp), ftell(mf->fp)); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pooled_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o BUILDSTDERR: pooled_alloc.c: In function 'new_pool': BUILDSTDERR: pooled_alloc.c:37:11: warning: unused variable 'cp' [-Wunused-variable] BUILDSTDERR: char *cp; BUILDSTDERR: ^~ BUILDSTDERR: pooled_alloc.c:35:12: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: size_t i, n = PSIZE / p->dsize; BUILDSTDERR: ^ BUILDSTDERR: pooled_alloc.c: In function 'pool_alloc': BUILDSTDERR: pooled_alloc.c:65:12: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: size_t i; BUILDSTDERR: ^ BUILDSTDERR: pooled_alloc.c: In function 'pool_free': BUILDSTDERR: pooled_alloc.c:95:19: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: size_t psize, i; BUILDSTDERR: ^ BUILDSTDERR: pooled_alloc.c:95:12: warning: unused variable 'psize' [-Wunused-variable] BUILDSTDERR: size_t psize, i; BUILDSTDERR: ^~~~~ /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libstaden-read.la -rpath /usr/lib64 -version-info 2:2:1 libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-ctfCompress.lo libstaden_read_la-seqIOCTF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo -lz -lcurl -lm gcc -shared .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-ctfCompress.o .libs/libstaden_read_la-seqIOCTF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o -lz -lcurl -lm -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -Wl,-soname -Wl,libstaden-read.so.1 -o .libs/libstaden-read.so.1.1.2 (cd .libs && rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1) (cd .libs && rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so) creating libstaden-read.la (cd .libs && rm -f libstaden-read.la && ln -s ../libstaden-read.la libstaden-read.la) make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' Making all in progs make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c convert_trace.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c makeSCF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extract_seq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extract_qual.c BUILDSTDERR: extract_seq.c: In function 'main': BUILDSTDERR: extract_seq.c:199:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (cp = strchr(line, '\n')) BUILDSTDERR: ^~ BUILDSTDERR: extract_qual.c: In function 'main': BUILDSTDERR: extract_qual.c:317:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (cp = strchr(line, '\n')) BUILDSTDERR: ^~ BUILDSTDERR: convert_trace.c:16:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] BUILDSTDERR: static char const rcsid[] = "$Id: convert_trace.c,v 1.12 2008-02-20 16:07:44 jkbonfield Exp $"; BUILDSTDERR: ^~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extract_fastq.c BUILDSTDERR: extract_fastq.c: In function 'main': BUILDSTDERR: extract_fastq.c:141:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (cp = strchr(line, '\n')) BUILDSTDERR: ^~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c index_tar.c BUILDSTDERR: index_tar.c: In function 'main': BUILDSTDERR: index_tar.c:72:21: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: index_tar.c:82:17: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_dump.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_info.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_update.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c get_comment.c BUILDSTDERR: convert_trace.c: In function 'main': BUILDSTDERR: convert_trace.c:743:23: warning: '%s' directive writing up to 8191 bytes into a region of size 2042 [-Wformat-overflow=] BUILDSTDERR: convert_trace.c:724:16: BUILDSTDERR: infname = line2; BUILDSTDERR: ~~~~~ BUILDSTDERR: convert_trace.c:743:23: BUILDSTDERR: sprintf(buf, "ERROR %s", infname); BUILDSTDERR: ^~ BUILDSTDERR: In file included from /usr/include/stdio.h:873, BUILDSTDERR: from convert_trace.c:5: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 8198 bytes into a destination of size 2048 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_tar.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_extract.c BUILDSTDERR: hash_tar.c: In function 'load_map': BUILDSTDERR: hash_tar.c:78:5: warning: implicit declaration of function 'close'; did you mean 'pclose'? [-Wimplicit-function-declaration] BUILDSTDERR: close(fp); BUILDSTDERR: ^~~~~ BUILDSTDERR: pclose BUILDSTDERR: hash_tar.c: In function 'main': BUILDSTDERR: hash_tar.c:273:11: warning: unused variable 'fp' [-Wunused-variable] BUILDSTDERR: FILE *fp; BUILDSTDERR: ^~ BUILDSTDERR: hash_tar.c: In function 'accumulate': BUILDSTDERR: hash_tar.c:136:21: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_tar.c:146:17: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_tar.c:204:1: warning: control reaches end of non-void function [-Wreturn-type] BUILDSTDERR: } BUILDSTDERR: ^ BUILDSTDERR: hash_extract.c: In function 'extract': BUILDSTDERR: hash_extract.c:20:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (data = HashFileExtract(hf, file, &len)) { BUILDSTDERR: ^~~~ BUILDSTDERR: hash_extract.c: In function 'main': BUILDSTDERR: hash_extract.c:74:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: if (c = strchr(file, '\n')) BUILDSTDERR: ^ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_list.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c trace_dump.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_sff.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c append_sff.c BUILDSTDERR: hash_sff.c: In function 'main': BUILDSTDERR: hash_sff.c:207:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while (len = fread(block, 1, 8192, fp)) { BUILDSTDERR: ^~~ BUILDSTDERR: hash_sff.c:230:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(hdr, 1, 31, fp); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_sff.c:258:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(hdr, 1, 31, fpout); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr_dump.c BUILDSTDERR: hash_tar.c: In function 'main': BUILDSTDERR: hash_tar.c:327:13: warning: 'hf' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: realloc(hf->headers, (hf->nheaders+1) * BUILDSTDERR: ~~^~~~~~~~~ BUILDSTDERR: append_sff.c: In function 'main': BUILDSTDERR: append_sff.c:116:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(chdr, 1, 31, fpout); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_dump_all.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_index_hash.c BUILDSTDERR: srf_dump_all.c: In function 'dump_solexa': BUILDSTDERR: srf_dump_all.c:309:50: warning: pointer targets in passing argument 3 of 'dump_conf4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: dump_conf4_solexa(files[1], seq, chunks[0]->data+1, chunks[0]->dlength-1); BUILDSTDERR: ~~~~~~~~~~~~~~~^~ BUILDSTDERR: srf_dump_all.c:227:6: note: expected 'signed char *' but argument is of type 'char *' BUILDSTDERR: void dump_conf4_solexa(FILE *fp, char *seq, signed char *bytes, int nbytes) { BUILDSTDERR: ^~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_dump_all.c:320:25: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: chunks[i]->data+2, chunks[i]->dlength-2); BUILDSTDERR: ~~~~~~~~~~~~~~~^~ BUILDSTDERR: srf_dump_all.c:194:6: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: void dump_samples4_solexa(FILE *fp, int lane, int tile, int x, int y, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_dump_all.c:333:25: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: chunks[i]->data+2, chunks[i]->dlength-2); BUILDSTDERR: ~~~~~~~~~~~~~~~^~ BUILDSTDERR: srf_dump_all.c:194:6: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: void dump_samples4_solexa(FILE *fp, int lane, int tile, int x, int y, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_extract_linear.c BUILDSTDERR: srf_dump_all.c:346:25: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: chunks[i]->data+2, chunks[i]->dlength-2); BUILDSTDERR: ~~~~~~~~~~~~~~~^~ BUILDSTDERR: srf_dump_all.c:194:6: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: void dump_samples4_solexa(FILE *fp, int lane, int tile, int x, int y, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_dump_all.c: In function 'read_filter_from_file': BUILDSTDERR: srf_dump_all.c:484:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: long lStartPos; /* Offset of start of current line */ BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: srf_dump_all.c:483:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable] BUILDSTDERR: long lLineLen; /* Current line length */ BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: srf_dump_all.c:506:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */ BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_index_hash.c: In function 'main': BUILDSTDERR: srf_index_hash.c:138:5: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: ftruncate(fileno(srf->fp), ftello(srf->fp)); BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_extract_hash.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf2fastq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf2fasta.c BUILDSTDERR: srf2fastq.c: In function 'ztr2fastq': BUILDSTDERR: srf2fastq.c:369:17: warning: variable 'start' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int start, length; BUILDSTDERR: ^~~~~ BUILDSTDERR: srf2fastq.c:480:21: warning: variable 'start' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int start, length; BUILDSTDERR: ^~~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_filter.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_info.c BUILDSTDERR: srf_filter.c: In function 'read_filter_from_file': BUILDSTDERR: srf_filter.c:164:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: long lStartPos; /* Offset of start of current line */ BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: srf_filter.c:163:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable] BUILDSTDERR: long lLineLen; /* Current line length */ BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: srf_filter.c: In function 'dump_read_filter': BUILDSTDERR: srf_filter.c:457:33: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: printf("\tread[%d] = %s\n", hi->data.i, hi->key); BUILDSTDERR: ~^ ~~~~~~~~~~ BUILDSTDERR: %ld BUILDSTDERR: srf_filter.c: In function 'add_readpair_region': BUILDSTDERR: srf_filter.c:587:16: warning: pointer targets in assignment from 'unsigned char *' to 'char *' differ in signedness [-Wpointer-sign] BUILDSTDERR: c.data = data; BUILDSTDERR: ^ BUILDSTDERR: srf_filter.c: In function 'srf_filter': BUILDSTDERR: srf_filter.c:699:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while (chunk = ztr_read_chunk_hdr(in_srf->mf)) { BUILDSTDERR: ^~~~~ BUILDSTDERR: srf_filter.c:788:23: warning: left-hand operand of comma expression has no effect [-Wunused-value] BUILDSTDERR: stderr, "Error making trace header.\nExiting.\n"; BUILDSTDERR: ^ BUILDSTDERR: srf_filter.c:788:23: warning: statement with no effect [-Wunused-value] BUILDSTDERR: srf_filter.c:794:66: warning: pointer targets in passing argument 3 of 'srf_construct_trace_hdr' differ in signedness [-Wpointer-sign] BUILDSTDERR: srf_construct_trace_hdr(&out_srf->th, in_srf->th.id_prefix, trace_hdr, trace_hdr_size); BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: In file included from srf_filter.c:47: BUILDSTDERR: ../io_lib/srf.h:144:18: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: srf_trace_hdr_t *srf_construct_trace_hdr(srf_trace_hdr_t *th, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_filter.c:894:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while (chunk = ztr_read_chunk_hdr(in_srf->mf)) { BUILDSTDERR: ^~~~~ BUILDSTDERR: srf_filter.c:980:78: warning: pointer targets in passing argument 4 of 'srf_construct_trace_body' differ in signedness [-Wpointer-sign] BUILDSTDERR: srf_construct_trace_body(&new_tb, name+strlen(in_srf->th.id_prefix), -1, mf->data, mf->size, old_tb.flags); BUILDSTDERR: ~~^~~~~~ BUILDSTDERR: In file included from srf_filter.c:47: BUILDSTDERR: ../io_lib/srf.h:152:19: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: srf_trace_body_t *srf_construct_trace_body(srf_trace_body_t *th, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_filter.c: In function 'read_filter_from_file': BUILDSTDERR: srf_filter.c:186:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */ BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_info.c: In function 'partial_decode_ztr2': BUILDSTDERR: srf_info.c:411:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: while (chunk = ztr_read_chunk_hdr(mf)) { BUILDSTDERR: ^~~~~ BUILDSTDERR: srf2fastq.c:248:13: warning: 'regn' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: regn_t *regn; BUILDSTDERR: ^~~~ gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_list.c BUILDSTDERR: srf_filter.c: In function 'srf_filter': BUILDSTDERR: srf_filter.c:970:19: warning: 'output_trace_header' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if( output_trace_header ) { BUILDSTDERR: ^ BUILDSTDERR: srf_list.c: In function 'count_file': BUILDSTDERR: srf_list.c:75:19: warning: unused variable 'data' [-Wunused-variable] BUILDSTDERR: unsigned char data[16]; BUILDSTDERR: ^~~~ BUILDSTDERR: srf_list.c:74:22: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: int item_sz = 9, i; BUILDSTDERR: ^ BUILDSTDERR: srf_list.c:73:11: warning: variable 'ipos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: off_t ipos, skip; BUILDSTDERR: ^~~~ BUILDSTDERR: srf_list.c:72:13: warning: unused variable 'count' [-Wunused-variable] BUILDSTDERR: int64_t count = 0; BUILDSTDERR: ^~~~~ BUILDSTDERR: srf_list.c: In function 'main': BUILDSTDERR: srf_list.c:158:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] BUILDSTDERR: printf("%s: %d sequences\n", argv[i], c); BUILDSTDERR: ~^ ~ BUILDSTDERR: %ld /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm mkdir .libs /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -lm creating convert_trace creating makeSCF creating extract_seq /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o index_tar index_tar.o -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_dump scf_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -lm creating extract_qual gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o index_tar index_tar.o -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_info scf_info.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_update scf_update.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_fastq extract_fastq.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_dump scf_dump.o ../io_lib/.libs/libstaden-read.so -lm creating extract_fastq /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o get_comment get_comment.o ../io_lib/libstaden-read.la -lm creating scf_dump /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_tar hash_tar.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_info scf_info.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_update scf_update.o ../io_lib/.libs/libstaden-read.so -lm creating scf_info /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_extract hash_extract.o ../io_lib/libstaden-read.la -lm creating scf_update /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_list hash_list.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/get_comment get_comment.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_tar hash_tar.o ../io_lib/.libs/libstaden-read.so -lm creating get_comment /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o trace_dump trace_dump.o ../io_lib/libstaden-read.la -lm creating hash_tar /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_sff hash_sff.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_extract hash_extract.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_list hash_list.o ../io_lib/.libs/libstaden-read.so -lm creating hash_extract /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o append_sff append_sff.o ../io_lib/libstaden-read.la -lm creating hash_list /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ztr_dump ztr_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/trace_dump trace_dump.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_sff hash_sff.o ../io_lib/.libs/libstaden-read.so -lm creating trace_dump /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_dump_all srf_dump_all.o ../io_lib/libstaden-read.la -lm creating hash_sff /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_index_hash srf_index_hash.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/append_sff append_sff.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ztr_dump ztr_dump.o ../io_lib/.libs/libstaden-read.so -lm creating append_sff creating ztr_dump /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_extract_linear srf_extract_linear.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_extract_hash srf_extract_hash.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_dump_all srf_dump_all.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_index_hash srf_index_hash.o ../io_lib/.libs/libstaden-read.so -lm creating srf_dump_all /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf2fastq srf2fastq.o ../io_lib/libstaden-read.la -lm creating srf_index_hash /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf2fasta srf2fasta.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_extract_linear srf_extract_linear.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_extract_hash srf_extract_hash.o ../io_lib/.libs/libstaden-read.so -lm creating srf_extract_linear creating srf_extract_hash /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_filter srf_filter.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf2fastq srf2fastq.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf2fasta srf2fasta.o ../io_lib/.libs/libstaden-read.so -lm creating srf2fastq creating srf2fasta /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm creating srf_filter creating srf_info gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm creating srf_list make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' Making all in tests make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.gk640R + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64 + cd io_lib-1.12.4 + rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64 + make install DESTDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64 Making install in io_lib make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' test -z "/usr/lib64" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/lib64" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libstaden-read.la' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/lib64/libstaden-read.la' /usr/bin/install -c .libs/libstaden-read.so.1.1.2 /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/lib64/libstaden-read.so.1.1.2 (cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so.1 || { rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1; }; }) (cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so; }; }) /usr/bin/install -c .libs/libstaden-read.lai /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/lib64/libstaden-read.la BUILDSTDERR: libtool: install: warning: remember to run `libtool --finish /usr/lib64' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' Making install in progs make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'convert_trace' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/convert_trace' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/convert_trace /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/convert_trace /bin/sh ../libtool --mode=install /usr/bin/install -c 'makeSCF' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/makeSCF' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/makeSCF /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/makeSCF /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_seq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/extract_seq' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/extract_seq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/extract_seq /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_qual' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/extract_qual' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/extract_qual /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/extract_qual /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/extract_fastq' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/extract_fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/extract_fastq /bin/sh ../libtool --mode=install /usr/bin/install -c 'index_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/index_tar' /usr/bin/install -c index_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/index_tar /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_dump' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/scf_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_info' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/scf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_info /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_update' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_update' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/scf_update /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_update /bin/sh ../libtool --mode=install /usr/bin/install -c 'get_comment' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/get_comment' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/get_comment /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/get_comment /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_tar' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/hash_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_tar /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_extract' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_extract' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/hash_extract /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_extract /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_list' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/hash_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_list /bin/sh ../libtool --mode=install /usr/bin/install -c 'trace_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/trace_dump' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/trace_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/trace_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_sff' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/hash_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_sff /bin/sh ../libtool --mode=install /usr/bin/install -c 'append_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/append_sff' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/append_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/append_sff /bin/sh ../libtool --mode=install /usr/bin/install -c 'ztr_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/ztr_dump' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/ztr_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/ztr_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_dump_all' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_dump_all' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_dump_all /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_dump_all /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_index_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_index_hash' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_index_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_index_hash /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_extract_linear' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_extract_linear' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_extract_linear /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_extract_linear /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_extract_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_extract_hash' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_extract_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_extract_hash /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf2fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf2fastq' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf2fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf2fastq /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf2fasta' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf2fasta' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf2fasta /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf2fasta /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_filter' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_filter' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_filter /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_filter /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_info' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_info /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_list' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /usr/bin/install -c .libs/srf_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_list make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' Making install in tests make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin" /usr/bin/install -c 'staden-io_lib-config' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/staden-io_lib-config' test -z "/usr/share/man/man1" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man1" /usr/bin/install -c -m 644 './man/man1/srf_index_hash.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man1/srf_index_hash.1' /usr/bin/install -c -m 644 './man/man1/srf_info.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man1/srf_info.1' /usr/bin/install -c -m 644 './man/man1/srf_list.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man1/srf_list.1' /usr/bin/install -c -m 644 './man/man1/srf2fasta.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man1/srf2fasta.1' /usr/bin/install -c -m 644 './man/man1/srf2fastq.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man1/srf2fastq.1' test -z "/usr/share/man/man3" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3" /usr/bin/install -c -m 644 './man/man3/read_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/read_scf_header.3' /usr/bin/install -c -m 644 './man/man3/read_allocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/read_allocate.3' /usr/bin/install -c -m 644 './man/man3/ExperimentFile.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/ExperimentFile.3' /usr/bin/install -c -m 644 './man/man3/write_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/write_reading.3' /usr/bin/install -c -m 644 './man/man3/write_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/write_scf.3' /usr/bin/install -c -m 644 './man/man3/read_deallocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/read_deallocate.3' /usr/bin/install -c -m 644 './man/man3/fwrite_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/fwrite_reading.3' /usr/bin/install -c -m 644 './man/man3/read2scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/read2scf.3' /usr/bin/install -c -m 644 './man/man3/scf2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/scf2read.3' /usr/bin/install -c -m 644 './man/man3/fwrite_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/fwrite_scf.3' /usr/bin/install -c -m 644 './man/man3/write_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/write_scf_header.3' /usr/bin/install -c -m 644 './man/man3/read_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/read_reading.3' /usr/bin/install -c -m 644 './man/man3/read_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/read_scf.3' /usr/bin/install -c -m 644 './man/man3/exp2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/exp2read.3' /usr/bin/install -c -m 644 './man/man3/fread_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/fread_reading.3' /usr/bin/install -c -m 644 './man/man3/read2exp.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/read2exp.3' /usr/bin/install -c -m 644 './man/man3/fread_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man3/fread_scf.3' test -z "/usr/share/man/man4" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man4" /usr/bin/install -c -m 644 './man/man4/Read.4' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/man/man4/Read.4' test -z "/usr/include/io_lib" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib" /usr/bin/install -c -m 644 'io_lib/Read.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/Read.h' /usr/bin/install -c -m 644 'io_lib/scf_extras.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/scf_extras.h' /usr/bin/install -c -m 644 'io_lib/translate.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/translate.h' /usr/bin/install -c -m 644 'io_lib/abi.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/abi.h' /usr/bin/install -c -m 644 'io_lib/fpoint.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/fpoint.h' /usr/bin/install -c -m 644 'io_lib/seqIOABI.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/seqIOABI.h' /usr/bin/install -c -m 644 'io_lib/alf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/alf.h' /usr/bin/install -c -m 644 'io_lib/seqIOCTF.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/seqIOCTF.h' /usr/bin/install -c -m 644 'io_lib/expFileIO.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/expFileIO.h' /usr/bin/install -c -m 644 'io_lib/plain.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/plain.h' /usr/bin/install -c -m 644 'io_lib/scf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/scf.h' /usr/bin/install -c -m 644 'io_lib/sff.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/sff.h' /usr/bin/install -c -m 644 'io_lib/array.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/array.h' /usr/bin/install -c -m 644 'io_lib/compress.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/compress.h' /usr/bin/install -c -m 644 'io_lib/error.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/error.h' /usr/bin/install -c -m 644 'io_lib/mach-io.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/mach-io.h' /usr/bin/install -c -m 644 'io_lib/misc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/misc.h' /usr/bin/install -c -m 644 'io_lib/open_trace_file.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/open_trace_file.h' /usr/bin/install -c -m 644 'io_lib/tar_format.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/tar_format.h' /usr/bin/install -c -m 644 'io_lib/traceType.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/traceType.h' /usr/bin/install -c -m 644 'io_lib/xalloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/xalloc.h' /usr/bin/install -c -m 644 'io_lib/mFILE.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/mFILE.h' /usr/bin/install -c -m 644 'io_lib/stdio_hack.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/stdio_hack.h' /usr/bin/install -c -m 644 'io_lib/vlen.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/vlen.h' /usr/bin/install -c -m 644 'io_lib/hash_table.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/hash_table.h' /usr/bin/install -c -m 644 'io_lib/jenkins_lookup3.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/jenkins_lookup3.h' /usr/bin/install -c -m 644 'io_lib/os.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/os.h' /usr/bin/install -c -m 644 'io_lib/compression.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/compression.h' /usr/bin/install -c -m 644 'io_lib/ztr.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/ztr.h' /usr/bin/install -c -m 644 'io_lib/deflate_interlaced.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/deflate_interlaced.h' /usr/bin/install -c -m 644 'io_lib/srf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/srf.h' /usr/bin/install -c -m 644 'io_lib/pooled_alloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/pooled_alloc.h' /usr/bin/install -c -m 644 'io_lib_config.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/include/io_lib/io_lib_config.h' make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' + find /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64 -name '*.la' -exec rm -f '{}' ';' + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.12.4-15.fc30 --unique-debug-suffix -1.12.4-15.fc30.riscv64 --unique-debug-src-base staden-io_lib-1.12.4-15.fc30.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/io_lib-1.12.4 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_index_hash explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/makeSCF explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/append_sff explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_filter extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/makeSCF extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_index_hash extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_filter extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/append_sff explicitly decompress any 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explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_list explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/get_comment explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_list explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_info extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_list extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_list extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/get_comment extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_info explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_sff extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_sff explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_dump extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/ztr_dump extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/ztr_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/extract_fastq extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/extract_fastq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/trace_dump extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/trace_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/extract_qual extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/extract_qual explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf2fastq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_info extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf2fastq extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_info explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_extract_linear extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_extract_linear explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_tar extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/hash_tar explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_update extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/scf_update explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/index_tar extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/index_tar explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_dump_all extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf_dump_all explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf2fasta explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/lib64/libstaden-read.so.1.1.2 extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/bin/srf2fasta extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/lib64/libstaden-read.so.1.1.2 /usr/lib/rpm/sepdebugcrcfix: Updated 27 CRC32s, 0 CRC32s did match. BUILDSTDERR: 1828 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/staden-io_lib-config from /bin/sh to #!/usr/bin/sh Processing files: staden-io_lib-1.12.4-15.fc30.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Hfnlfi + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + DOCDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/doc/staden-io_lib + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/doc/staden-io_lib + cp -pr README /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/doc/staden-io_lib + cp -pr COPYRIGHT /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/doc/staden-io_lib + cp -pr CHANGES /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/doc/staden-io_lib + cp -pr docs/ /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64/usr/share/doc/staden-io_lib + exit 0 Provides: libstaden-read.so.1()(64bit) staden-io_lib = 1.12.4-15.fc30 staden-io_lib(riscv-64) = 1.12.4-15.fc30 Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcurl.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstaden-read.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: staden-io_lib-devel-1.12.4-15.fc30.riscv64 Provides: staden-io_lib-devel = 1.12.4-15.fc30 staden-io_lib-devel(riscv-64) = 1.12.4-15.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libstaden-read.so.1()(64bit) Processing files: staden-io_lib-debugsource-1.12.4-15.fc30.riscv64 Provides: staden-io_lib-debugsource = 1.12.4-15.fc30 staden-io_lib-debugsource(riscv-64) = 1.12.4-15.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: staden-io_lib-debuginfo-1.12.4-15.fc30.riscv64 Provides: debuginfo(build-id) = 05afcd0ec566b156a4fb0eae59a6bdcda45015dd debuginfo(build-id) = 0b38eb01dcb79a5613156cdf128ae3f03872d9e2 debuginfo(build-id) = 220ff395a90f7b36bc514fe4c809de914295b1bd debuginfo(build-id) = 314496c16b59cca886da4d0e3a1e4d8f62fc25fb debuginfo(build-id) = 41ea42a5cde7bc8d3211a68b380eea0022c9c6cd debuginfo(build-id) = 4b3fa4b9bb4a81749ee2edba8720c7a992d23220 debuginfo(build-id) = 4ed98ec31e68b677b19068a814b4a43c64c0e0a8 debuginfo(build-id) = 5edcf86756be11ba8500e21b2d8bd2dfc49ec35c debuginfo(build-id) = 61c863e5be8828ba27a0f886fb4d4c9fef7ba7dc debuginfo(build-id) = 777823779276e47bb50799fb5860a5edad18df42 debuginfo(build-id) = 80a4e1dbcd2e987ad3b8e9635e9407a1ce46be1f debuginfo(build-id) = 8d3c0324db6c4794fa0c8cfdd28fec8a7badddc2 debuginfo(build-id) = 8ec57eda1c42f6eaa469a0d7660e8c4caa326c7a debuginfo(build-id) = 9c538f5e21c33d1993d90bde1f74bc7fe40fdc0c debuginfo(build-id) = a806f7ade7c2e0c887beaf58a2a2c0dae934dd2f debuginfo(build-id) = aabc92ddbd1304d7031b89ade63173f46ace346e debuginfo(build-id) = aba43b6e0d45f815cec1ea087871d9614da62c3d debuginfo(build-id) = b2778a29c1fd831b9e44d8ae12cf781dcc698bf9 debuginfo(build-id) = b908b1743cb42936b0741a0aeb7e73fe9c745f97 debuginfo(build-id) = c1a712d802402dcdacc8fdc3d4f3b60b80889ae6 debuginfo(build-id) = cf9f06196c46e957782868cecceb1ef758ee8632 debuginfo(build-id) = e12597db34591bcb5de2b5e17abcd341219d02cd debuginfo(build-id) = e3b7e869664a3174cb6caf8cda9395e55a978c27 debuginfo(build-id) = eddbdfc60fe18d98be77d9d7fb91d4f64c5c9466 debuginfo(build-id) = eed4a23ea4f1443cb0740a2670063da0390cc289 debuginfo(build-id) = f3c154bbf26e4b882aadfb74b56d7a88ff03a80e debuginfo(build-id) = fef1ddb3700b5d40705830fd72022fb2b6fe93e7 staden-io_lib-debuginfo = 1.12.4-15.fc30 staden-io_lib-debuginfo(riscv-64) = 1.12.4-15.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: staden-io_lib-debugsource(riscv-64) = 1.12.4-15.fc30 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64 Wrote: /builddir/build/RPMS/staden-io_lib-1.12.4-15.fc30.riscv64.rpm Wrote: /builddir/build/RPMS/staden-io_lib-devel-1.12.4-15.fc30.riscv64.rpm Wrote: /builddir/build/RPMS/staden-io_lib-debugsource-1.12.4-15.fc30.riscv64.rpm Wrote: /builddir/build/RPMS/staden-io_lib-debuginfo-1.12.4-15.fc30.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.XcO7ko + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-15.fc30.riscv64 + exit 0 Child return code was: 0