Mock Version: 1.4.9
Mock Version: 1.4.9
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/seaview.spec'], chrootPath='/var/lib/mock/f29-build-25169-13131/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x200211b630>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/seaview.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False
Building target platforms: riscv64
Building for target riscv64
Wrote: /builddir/build/SRPMS/seaview-4.6.2.1-3.fc29.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/seaview.spec'], chrootPath='/var/lib/mock/f29-build-25169-13131/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x200211b630>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/seaview.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False
Building target platforms: riscv64
Building for target riscv64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.MD1Dh8
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf seaview
+ /usr/bin/gzip -dc /builddir/build/SOURCES/seaview_4.6.2.1.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd seaview
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (seaview-chris.patch):
+ echo 'Patch #0 (seaview-chris.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .chris --fuzz=0
patching file Makefile
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.qnBcwb
+ umask 022
+ cd /builddir/build/BUILD
+ cd seaview
+ make -j4
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx
BUILDSTDERR: seaview.cxx:3326:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
BUILDSTDERR:    strcat(suggested, "."PDF_OR_PS_EXT);
BUILDSTDERR:                      ^
BUILDSTDERR: seaview.cxx:3436:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
BUILDSTDERR:  pdf_form->label("Set "PDF_OR_PS" output options");
BUILDSTDERR:                  ^
BUILDSTDERR: seaview.cxx:5025:6: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
BUILDSTDERR:      {"Prepare "PDF_OR_PS"", 0, file_menu_callback, 0, 0},
BUILDSTDERR:       ^
BUILDSTDERR: seaview.cxx:5026:6: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
BUILDSTDERR:      {""PDF_OR_PS" options...", 0, file_menu_callback, 0, FL_MENU_DIVIDER},
BUILDSTDERR:       ^
BUILDSTDERR: use_mase_files.cxx: In function 'int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)':
BUILDSTDERR: use_mase_files.cxx:215:2: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:   while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: use_mase_files.cxx:215:62: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
BUILDSTDERR:   while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0;
BUILDSTDERR:                                                               ^~~~
BUILDSTDERR: use_mase_files.cxx: In function 'int read_clustal_align(const char*, char***, char***, char***, char**, char**)':
BUILDSTDERR: use_mase_files.cxx:623:3: warning: this 'while' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:    while(*p==' ') p--; *(p+1)=0;
BUILDSTDERR:    ^~~~~
BUILDSTDERR: use_mase_files.cxx:623:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while'
BUILDSTDERR:    while(*p==' ') p--; *(p+1)=0;
BUILDSTDERR:                        ^
BUILDSTDERR: regions.cxx: In function 'void save_active_region(SEA_VIEW*)':
BUILDSTDERR: regions.cxx:494:10: warning: variable 'taille' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:  int tmp, taille;
BUILDSTDERR:           ^~~~~~
BUILDSTDERR: regions.cxx: In function 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)':
BUILDSTDERR: regions.cxx:305:9: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    system(cmd);
BUILDSTDERR:    ~~~~~~^~~~~
BUILDSTDERR: seaview.cxx: In function 'int delete_selected_seqs(SEA_VIEW*)':
BUILDSTDERR: seaview.cxx:1739:2: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:   for(i = 0, j = 0; i<  view->tot_seqs; i++)
BUILDSTDERR:   ^~~
BUILDSTDERR: seaview.cxx:1742:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:    memcpy(view->col_rank , temp_data, new_tot_seqs * sizeof(char *) );
BUILDSTDERR:    ^~~~~~
BUILDSTDERR: seaview.cxx: In function 'void colors_callback(Fl_Widget*, void*)':
BUILDSTDERR: seaview.cxx:1893:15: warning: variable 'item' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:  Fl_Menu_Item *item;
BUILDSTDERR:                ^~~~
BUILDSTDERR: seaview.cxx: In function 'void delete_tmp_filename(const char*)':
BUILDSTDERR: seaview.cxx:642:9: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    system(fname);
BUILDSTDERR:    ~~~~~~^~~~~~~
BUILDSTDERR: seaview.cxx: In function 'char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)':
BUILDSTDERR: seaview.cxx:2885:38: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:     if( *last_visited_directory )chdir(last_visited_directory);
BUILDSTDERR:                                  ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: regions.cxx:267:18: warning: '.fst' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:    sprintf(fname, "%s.fst", base_fname);
BUILDSTDERR:                   ^~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from regions.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: regions.cxx:283:16: warning: '%s' directive writing up to 4095 bytes into a region of size 496 [-Wformat-overflow=]
BUILDSTDERR:    sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d');
BUILDSTDERR:                 ^~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from regions.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 16 or more bytes (assuming 4111) into a destination of size 500
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: regions.cxx:307:18: warning: '.fst-gb.txts' directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:    sprintf(fname, "%s.fst-gb.txts", base_fname);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from regions.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 13 and 4108 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: regions.cxx:335:35: warning: 'last' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   memmove(cmd, last, l + 1 - (last - cmd));
BUILDSTDERR:                               ~~~~~^~~~~
BUILDSTDERR: regions.cxx: In function 'const char* site_mask_creation_dialog(SEA_VIEW*, position_mask*)':
BUILDSTDERR: regions.cxx:737:10: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return retval;
BUILDSTDERR:           ^~~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx
BUILDSTDERR: use_mase_files.cxx: In function 'int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)':
BUILDSTDERR: use_mase_files.cxx:137:18: warning: 'lpre' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:  int  l, lenseqs, lpre, lseq, l2, totseqs = -1, want_header, curr_max_header;
BUILDSTDERR:                   ^~~~
BUILDSTDERR: use_mase_files.cxx: In function 'int read_phylip_align(const char*, char***, char***, char***, char**, char**)':
BUILDSTDERR: use_mase_files.cxx:521:7: warning: 'q' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:  l = q - seq[totseqs - 1];
BUILDSTDERR:      ~~^~~~~~~~~~~~~~~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx
BUILDSTDERR: use_mase_files.cxx: In function 'int read_clustal_align(const char*, char***, char***, char***, char**, char**)':
BUILDSTDERR: use_mase_files.cxx:621:9: warning: 'wid_name' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    memcpy(seqname[curr_spec], line, wid_name);
BUILDSTDERR:    ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: use_mase_files.cxx:650:8: warning: 'l' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   memcpy(seq[curr_spec]+curr_len, line + wid_name, l);
BUILDSTDERR:   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: seaview.cxx: In function 'void draw_header(Fl_Widget*, SEA_VIEW*)':
BUILDSTDERR: seaview.cxx:1110:22: warning: '%7d' directive writing between 7 and 11 bytes into a region of size 10 [-Wformat-overflow=]
BUILDSTDERR:    sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1);
BUILDSTDERR:                       ^~~~~
BUILDSTDERR: seaview.cxx:1110:22: note: directive argument in the range [-2147483648, 2147483646]
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from seaview.cxx:67:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 8 and 12 bytes into a destination of size 10
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: use_mase_files.cxx: In function 'int printout(SEA_VIEW*, const char*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)':
BUILDSTDERR: use_mase_files.cxx:1814:16: warning: 'vary_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:     vary_pos[k++] = current + i + 1;
BUILDSTDERR:                 ^
BUILDSTDERR: use_mase_files.cxx:1938:34: warning: 'surface' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (use_pdf || use_svg) delete surface;
BUILDSTDERR:                                   ^~~~~~~
BUILDSTDERR: use_mase_files.cxx:1968:33: warning: 'descender' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        fl_rectf(xx, y - fontsize + descender, char_width+1, fontsize);
BUILDSTDERR:                     ~~~~~~~~~~~~~^~~~~~~~~~~
BUILDSTDERR: use_mase_files.cxx:1677:35: note: 'descender' was declared here
BUILDSTDERR:    double char_width = fontsize/2, descender, margin = 25;
BUILDSTDERR:                                    ^~~~~~~~~
BUILDSTDERR: use_mase_files.cxx:1827:71: warning: 'top_margin' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   out_vary_pos(vary_pos, widnames, k, nl, textfile, margin, top_margin + curr_lines * fontsize);
BUILDSTDERR:                                                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: use_mase_files.cxx:1916:12: warning: 'lines_per_page' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        else if(curr_lines + 1 <= lines_per_page) {
BUILDSTDERR:             ^~
BUILDSTDERR: align.cxx: In function 'void replace_stars(char*)':
BUILDSTDERR: align.cxx:1298:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:   fread(all, 1, l, in);
BUILDSTDERR:   ~~~~~^~~~~~~~~~~~~~~
BUILDSTDERR: use_mase_files.cxx: In function 'void format_conversion(int, char**)':
BUILDSTDERR: use_mase_files.cxx:2258:20: warning: 'current_seg' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   current_seg->next = seg;
BUILDSTDERR:   ~~~~~~~~~~~~~~~~~~^~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx
BUILDSTDERR: align.cxx: In function 'char* get_algo_opts(int, char**)':
BUILDSTDERR: align.cxx:987:18: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
BUILDSTDERR:  sprintf(resname, "msa_opt_args_%d", algonum + 1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx:987:18: note: directive argument in the range [-2147483647, 2147483647]
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx: In function 'char* calc_msa_command(SEA_VIEW*, char*, void (*)(const char*, ...))':
BUILDSTDERR: align.cxx:621:16: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
BUILDSTDERR:    sprintf(tmp, "%s %s", local, optargs);
BUILDSTDERR:                 ^~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 401) into a destination of size 400
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx:618:17: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
BUILDSTDERR:     sprintf(tmp, "%s %s", optargs, local);
BUILDSTDERR:                  ^~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 401) into a destination of size 400
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: seaview.cxx: In function 'void del_gap_only_sites(SEA_VIEW*)':
BUILDSTDERR: seaview.cxx:1676:9: warning: 'debut' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    count = position - debut;
BUILDSTDERR:    ~~~~~~^~~~~~~~~~~~~~~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx
BUILDSTDERR: align.cxx: In function 'char* get_opt_resname(int)':
BUILDSTDERR: align.cxx:987:18: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
BUILDSTDERR:  sprintf(resname, "msa_opt_args_%d", algonum + 1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx:987:18: note: directive argument in the range [-2147483647, 2147483647]
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx: In function 'void delete_align_callback(Fl_Widget*, void*)':
BUILDSTDERR: align.cxx:825:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
BUILDSTDERR:  sprintf(msa_name, "msa_name_%d", view->alignment_algorithm + 1);
BUILDSTDERR:                    ^~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 11 and 21 bytes into a destination of size 20
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx: In function 'void edit_align_callback(Fl_Widget*, void*)':
BUILDSTDERR: align.cxx:944:18: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
BUILDSTDERR:  sprintf(resname, "msa_name_%d", view->alignment_algorithm + 1);
BUILDSTDERR:                   ^~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 11 and 21 bytes into a destination of size 20
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: xfmatpt.cxx:208:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
BUILDSTDERR:  Fl_Widget *postscript = cre_button(fin, curr_y, &width, but_height, fontsize, "Write "PDF_OR_PS);
BUILDSTDERR:                                                                                ^
BUILDSTDERR: xfmatpt.cxx:873:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
BUILDSTDERR:    fl_message("Dot plot is now in file\n%s\nin "PDF_OR_PS" format", surface->outfname());
BUILDSTDERR:               ^
BUILDSTDERR: align.cxx: In function 'int save_fasta_file_no_gaponly(char*, char**, int, int*, int*)':
BUILDSTDERR: align.cxx:1341:25: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
BUILDSTDERR:    sprintf(seqname[num], "S_%d", num);
BUILDSTDERR:                          ^~~~~~
BUILDSTDERR: align.cxx:1341:25: note: directive argument in the range [0, 2147483647]
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 4 and 13 bytes into a destination of size 10
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx: In function 'void unalign(SEA_VIEW*)':
BUILDSTDERR: align.cxx:1411:56: warning: 'calc_color_function' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:       view->col_rank[num][i] = (char)calc_color_function( res );
BUILDSTDERR:                                      ~~~~~~~~~~~~~~~~~~~^~~~~~~
BUILDSTDERR: align.cxx: In function 'int replace_align_part(SEA_VIEW*, int, int, char*, int, int, int*, align_choice, const char**)':
BUILDSTDERR: align.cxx:425:74: warning: 'calc_color_function' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:     if (view->col_rank) view->col_rank[num][i] = (char)calc_color_function( res );
BUILDSTDERR:                                                        ~~~~~~~~~~~~~~~~~~~^~~~~~~
BUILDSTDERR: seaview.cxx: In function 'void edit_menu_callback(Fl_Widget*, void*)':
BUILDSTDERR: seaview.cxx:2549:10: warning: 'new_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   new_pos += 2;
BUILDSTDERR:   ~~~~~~~~^~~~
BUILDSTDERR: align.cxx: In function 'void align_selected_parts(SEA_VIEW*, align_choice, bool)':
BUILDSTDERR: align.cxx:183:16: warning: '.pir' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:  sprintf(fname, "%s.pir", base_fname);
BUILDSTDERR:                 ^~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx:232:16: warning: '.out' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:  sprintf(fname, "%s.out", base_fname);
BUILDSTDERR:                 ^~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx:232:16: warning: '.out' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:  sprintf(fname, "%s.out", base_fname);
BUILDSTDERR:                 ^~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx: In function 'void profile_align(SEA_VIEW*)':
BUILDSTDERR: align.cxx:1114:18: warning: '_1.fasta' directive writing 8 bytes into a region of size between 1 and 200 [-Wformat-overflow=]
BUILDSTDERR:   sprintf(fname1, "%s_1.fasta", base_fname);
BUILDSTDERR:                   ^~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 208 bytes into a destination of size 200
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx:1135:18: warning: '_2.fasta' directive writing 8 bytes into a region of size between 1 and 200 [-Wformat-overflow=]
BUILDSTDERR:   sprintf(fname2, "%s_2.fasta", base_fname);
BUILDSTDERR:                   ^~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 208 bytes into a destination of size 200
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx:1178:18: warning: '.aligned' directive writing 8 bytes into a region of size between 1 and 200 [-Wformat-overflow=]
BUILDSTDERR:   sprintf(fname1, "%s.aligned", base_fname);
BUILDSTDERR:                   ^~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 208 bytes into a destination of size 200
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx:1178:18: warning: '.aligned' directive writing 8 bytes into a region of size between 1 and 200 [-Wformat-overflow=]
BUILDSTDERR:   sprintf(fname1, "%s.aligned", base_fname);
BUILDSTDERR:                   ^~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 208 bytes into a destination of size 200
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx:1277:62: warning: 'calc_color_function' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      view->col_rank[table[num]][i] = (char)calc_color_function( res );
BUILDSTDERR:                                            ~~~~~~~~~~~~~~~~~~~^~~~~~~
BUILDSTDERR: xfmatpt.cxx: In function 'void change_comput_params(Fl_Widget*, void*)':
BUILDSTDERR: xfmatpt.cxx:750:14: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
BUILDSTDERR:   sprintf(tmp,"%d", fdui->identites);
BUILDSTDERR:               ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from matpt.h:3,
BUILDSTDERR:                  from xfmatpt.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx: In function 'int command_line_align(int, char**)':
BUILDSTDERR: align.cxx:1503:23: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
BUILDSTDERR:      sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1);
BUILDSTDERR:                        ^~~~~~~~~~~~~~~~~
BUILDSTDERR: align.cxx:1503:23: note: directive argument in the range [-2147483647, 2147483647]
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from align.cxx:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx
BUILDSTDERR: seaview.cxx: In function 'void handle_keyboard(SEA_VIEW*, unsigned int, int)':
BUILDSTDERR: seaview.cxx:4597:2: warning: 'count_each' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   if(count_each == multipl &&
BUILDSTDERR:   ^~
BUILDSTDERR: seaview.cxx:4607:10: warning: 'count' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   new_pos = view->cursor_site - count;
BUILDSTDERR:   ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: seaview.cxx:4724:3: warning: 'count_each' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if(count_each == multipl &&
BUILDSTDERR:    ^~
BUILDSTDERR: seaview.cxx:4648:2: warning: 'count_each' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   if(count_each == multipl && view->regions != NULL)
BUILDSTDERR:   ^~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx
BUILDSTDERR: nexus.cxx: In function 'char** process_taxa_taxlabels(FILE*, int)':
BUILDSTDERR: nexus.cxx:357:17: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:  if(p != NULL && *p != ';') skip_command(in);
BUILDSTDERR:                  ^~
BUILDSTDERR: nexus.cxx: In function 'list_segments* build_list_pairs(FILE*, int)':
BUILDSTDERR: nexus.cxx:440:28: warning: 'next' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    debut = next->debut; fin = next->fin;
BUILDSTDERR:                         ~~~~^~~~~~~~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx
BUILDSTDERR: nexus.cxx: In function 'char** process_block_characters(FILE*, int*, char***, int*, int*)':
BUILDSTDERR: nexus.cxx:682:37: warning: 'gap' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:     seqs = process_chars_m_interleave(in, *nsites, gap,
BUILDSTDERR:            ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
BUILDSTDERR:      *pntaxa, *taxnames, FALSE, matchchar, missing, *protein);
BUILDSTDERR:      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: concatenate.cxx: In function 'void concatenate(SEA_VIEW*, SEA_VIEW*, bool, bool, bool)':
BUILDSTDERR: concatenate.cxx:114:25: warning: 'gaps' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          add_seq_to_align(target, source->seqname[i], gaps, target_length, no_gui);
BUILDSTDERR:          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: concatenate.cxx:124:32: warning: 'found' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (want_addgaps) found[j] = TRUE;
BUILDSTDERR:                                 ^
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx
BUILDSTDERR: statistics.cxx: In function 'void geni_act(SEA_VIEW*)':
BUILDSTDERR: statistics.cxx:650:14: warning: 'Qmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        sprintf(p, "Maximum : %.3f (%s - %s, %d transitions, %d transversions)\n", titvmax, titvmaxname1, titvmaxname2, (int)Pmax, (int)Qmax);
BUILDSTDERR:        ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: statistics.cxx:648:14: warning: 'Qmin' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        sprintf(p, "Minimum : %.3f (%s - %s, %d transitions, %d transversions)\n", titvmin, titvminname1, titvminname2, (int)Pmin, (int)Qmin);
BUILDSTDERR:        ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: statistics.cxx:650:14: warning: 'Pmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        sprintf(p, "Maximum : %.3f (%s - %s, %d transitions, %d transversions)\n", titvmax, titvmaxname1, titvmaxname2, (int)Pmax, (int)Qmax);
BUILDSTDERR:        ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: statistics.cxx:648:14: warning: 'Pmin' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        sprintf(p, "Minimum : %.3f (%s - %s, %d transitions, %d transversions)\n", titvmin, titvminname1, titvminname2, (int)Pmin, (int)Qmin);
BUILDSTDERR:        ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: statistics.cxx:366:55: warning: 'compgroupall' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4];
BUILDSTDERR:                                                        ^~~~~~~~~~~~
BUILDSTDERR: statistics.cxx:366:43: warning: 'compgroup' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4];
BUILDSTDERR:                                            ^~~~~~~~~
BUILDSTDERR: treedraw.cxx:326:6: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
BUILDSTDERR:      {"Save as "PDF_OR_PS"", 0, file_callback, NULL, 0},
BUILDSTDERR:       ^
BUILDSTDERR: trees.cxx: In function 'matrix* Obs_Dist(allseq*, model*)':
BUILDSTDERR: trees.cxx:1512:9: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:   phydbl unc_len;
BUILDSTDERR:          ^~~~~~~
BUILDSTDERR: trees.cxx: In function 'matrix* K80_dist_nogamma(allseq*)':
BUILDSTDERR: trees.cxx:1654:9: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:   phydbl unc_len;
BUILDSTDERR:          ^~~~~~~
BUILDSTDERR: trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)':
BUILDSTDERR: trees.cxx:1267:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(bootstrap_trees, l, 1, in);
BUILDSTDERR:            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx: In function 'void command_line_phylogeny(int, char**)':
BUILDSTDERR: trees.cxx:2724:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(utree, s, 1, in);
BUILDSTDERR:        ~~~~~^~~~~~~~~~~~~~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx
BUILDSTDERR: least_squares_brl.cxx: In function 'int tree_btos(int**, int, double*, double*, double*, char**, noeud2**)':
BUILDSTDERR: least_squares_brl.cxx:310:47: warning: 'tax2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   int           notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1;
BUILDSTDERR:                                                ^~~~
BUILDSTDERR: least_squares_brl.cxx:310:41: warning: 'tax1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   int           notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1;
BUILDSTDERR:                                          ^~~~
BUILDSTDERR: least_squares_brl.cxx:349:3: warning: 'sommebi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (sommebi == 2) {
BUILDSTDERR:    ^~
BUILDSTDERR: addbootstrap.cxx: In function 'char* compute_consensus_tree(char**, int**, int)':
BUILDSTDERR: addbootstrap.cxx:895:7: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (k < height) { // columns were not all identical, try columns on 0-side of branch i
BUILDSTDERR:        ^~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx
BUILDSTDERR: trees.cxx: In function 'char* run_parsimony_method(SEA_VIEW*, int, const char*, int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int, char**, void (*)(const char*, ...))':
BUILDSTDERR: trees.cxx:2309:18: warning: '%d' directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
BUILDSTDERR:      sprintf(tmp, "Bootstrap replicate: %d", j + 1);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:2309:18: note: directive argument in the range [1, 2147483647]
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 23 and 32 bytes into a destination of size 30
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:2004:41: warning: ' best trees, ' directive writing 13 bytes into a region of size between 12 and 21 [-Wformat-overflow=]
BUILDSTDERR:        if (count_best > 1) sprintf(best, "consensus of %d best trees, ", count_best);
BUILDSTDERR:                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 37 bytes into a destination of size 35
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:2059:51: warning: 'all_best' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (count > 1) final_tree = add_equally_best(final_tree, all_best, count);
BUILDSTDERR:                                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:2354:41: warning: 'all_best' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (count > 1) tree = add_equally_best(tree, all_best, count);
BUILDSTDERR:                          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:2287:33: note: 'all_best' was declared here
BUILDSTDERR:   char *tree, *newtree, *p, *q, *all_best, *bootstrap_trees = NULL;
BUILDSTDERR:                                  ^~~~~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx
BUILDSTDERR: trees.cxx: In function 'void parsimony_dialog(SEA_VIEW*)':
BUILDSTDERR: trees.cxx:2101:17: warning: 'w_best' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    Fl_Int_Input *w_best;
BUILDSTDERR:                  ^~~~~~
BUILDSTDERR: trees.cxx:2194:36: warning: 'less_thorough_b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else if (less_thorough_b->value()) s_option = less_thorough;
BUILDSTDERR:               ~~~~~~~~~~~~~~~~~~~~~~^~
BUILDSTDERR: trees.cxx:2193:26: warning: 'thorough_b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (thorough_b->value()) s_option = more_thorough;
BUILDSTDERR:          ~~~~~~~~~~~~~~~~~^~
BUILDSTDERR: pseudoterminal.cxx: In function 'int run_external_prog_in_pseudoterm(char*, const char*, const char*)':
BUILDSTDERR: pseudoterminal.cxx:342:11: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:     freopen(dialogfname, "r", stdin);
BUILDSTDERR:     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: pseudoterminal.cxx:344:10: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    freopen(slavename, "a", stderr);
BUILDSTDERR:    ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx: In function 'char* run_distance_method(SEA_VIEW*, int, int, int, int, int, Fl_Box*, const char*, int, const char*, const char*, int, void (*)(const char*, ...), int)':
BUILDSTDERR: trees.cxx:502:10: warning: 'display_tree' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return display_tree;
BUILDSTDERR:           ^~~~~~~~~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx
BUILDSTDERR: unrooted.cxx: In function 'hit try_angle_draw(float, int*, int*, float*, int, int, int, int)':
BUILDSTDERR: unrooted.cxx:634:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:   if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4;
BUILDSTDERR:   ^~
BUILDSTDERR: unrooted.cxx:634:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4;
BUILDSTDERR:                            ^~
BUILDSTDERR: unrooted.cxx:635:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:   if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4;
BUILDSTDERR:   ^~
BUILDSTDERR: unrooted.cxx:635:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4;
BUILDSTDERR:                            ^~
BUILDSTDERR: unrooted.cxx:636:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:   if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4;
BUILDSTDERR:   ^~
BUILDSTDERR: unrooted.cxx:636:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4;
BUILDSTDERR:                            ^~
BUILDSTDERR: unrooted.cxx:637:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:   if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4;
BUILDSTDERR:   ^~
BUILDSTDERR: unrooted.cxx:637:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4;
BUILDSTDERR:                            ^~
BUILDSTDERR: trees.cxx: In function 'char* replace_tree_names_by_rank(const char*, char**, int)':
BUILDSTDERR: trees.cxx:2662:24: warning: 'qstart' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      q = qstart + strlen(qstart);
BUILDSTDERR:                   ~~~~~~^~~~~~~~
BUILDSTDERR: trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)':
BUILDSTDERR: trees.cxx:1142:18: warning: '.startingtree' directive writing 13 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:      sprintf(tmp, "%s.startingtree", base_fname);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 14 and 4109 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:1158:18: warning: '.phy_phyml_stats.txt' directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:    sprintf(input, "%s.phy_phyml_stats.txt", base_fname);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:1161:20: warning: '.phy_phyml_stat.txt' directive writing 19 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:      sprintf(input, "%s.phy_phyml_stat.txt", base_fname);
BUILDSTDERR:                     ^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 20 and 4115 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:1165:20: warning: '.phy_phyml_stats' directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:      sprintf(input, "%s.phy_phyml_stats", base_fname);
BUILDSTDERR:                     ^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 4112 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:1179:18: warning: '.phy_phyml_tree.txt' directive writing 19 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:    sprintf(input, "%s.phy_phyml_tree.txt", base_fname);
BUILDSTDERR:                   ^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 20 and 4115 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:1182:20: warning: '.phy_phyml_tree' directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:      sprintf(input, "%s.phy_phyml_tree", base_fname);
BUILDSTDERR:                     ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 16 and 4111 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:1205:22: warning: '.phy_phyml_boot_stats.txt' directive writing 25 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:        sprintf(input, "%s.phy_phyml_boot_stats.txt", base_fname);
BUILDSTDERR:                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 26 and 4121 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:1208:24: warning: '.phy_phyml_boot_stats' directive writing 21 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:          sprintf(input, "%s.phy_phyml_boot_stats", base_fname);
BUILDSTDERR:                         ^~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 22 and 4117 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:1223:22: warning: '.phy_phyml_boot_trees.txt' directive writing 25 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:        sprintf(input, "%s.phy_phyml_boot_trees.txt", base_fname);
BUILDSTDERR:                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 26 and 4121 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:1226:23: warning: '.phy_phyml_boot_trees' directive writing 21 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:         sprintf(input, "%s.phy_phyml_boot_trees", base_fname);
BUILDSTDERR:                        ^~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 22 and 4117 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: trees.cxx:1231:24: warning: '.phy_phyml_boot_trees_truena...' directive writing 34 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
BUILDSTDERR:          sprintf(input, "%s.phy_phyml_boot_trees_truename.txt", base_fname);
BUILDSTDERR:                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from seaview.h:3,
BUILDSTDERR:                  from trees.cxx:4:
BUILDSTDERR: /usr/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 35 and 4130 bytes into a destination of size 4096
BUILDSTDERR:    return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:        __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx
BUILDSTDERR: trees.cxx: In function 'void command_line_phylogeny(int, char**)':
BUILDSTDERR: trees.cxx:2774:11: warning: 'tree' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      fwrite(tree, strlen(tree), 1, out);
BUILDSTDERR:      ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: unrooted.cxx: In function 'int set_angles_noeuds(bignoeud*, bignoeud*, double, double*, double)':
BUILDSTDERR: unrooted.cxx:1121:66: warning: 'poids2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2);
BUILDSTDERR:                                                            ~~~~~~~^~~~~~~~
BUILDSTDERR: unrooted.cxx:1121:66: warning: 'poids1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: unrooted.cxx:1128:9: warning: 'poids' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   return poids;
BUILDSTDERR:          ^~~~~
BUILDSTDERR: treedraw.cxx: In function 'int count_node(noeud*, noeud*)':
BUILDSTDERR: treedraw.cxx:3288:15: warning: argument 2 null where non-null expected [-Wnonnull]
BUILDSTDERR:      if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) {
BUILDSTDERR:          ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from seaview.h:5,
BUILDSTDERR:                  from treedraw.h:4,
BUILDSTDERR:                  from treedraw.cxx:16:
BUILDSTDERR: /usr/include/string.h:136:12: note: in a call to function 'int strcmp(const char*, const char*)' declared here
BUILDSTDERR:  extern int strcmp (const char *__s1, const char *__s2)
BUILDSTDERR:             ^~~~~~
BUILDSTDERR: treedraw.cxx:3288:52: warning: argument 2 null where non-null expected [-Wnonnull]
BUILDSTDERR:      if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) {
BUILDSTDERR:                                               ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from seaview.h:5,
BUILDSTDERR:                  from treedraw.h:4,
BUILDSTDERR:                  from treedraw.cxx:16:
BUILDSTDERR: /usr/include/string.h:136:12: note: in a call to function 'int strcmp(const char*, const char*)' declared here
BUILDSTDERR:  extern int strcmp (const char *__s1, const char *__s2)
BUILDSTDERR:             ^~~~~~
BUILDSTDERR: treedraw.cxx:3288:89: warning: argument 2 null where non-null expected [-Wnonnull]
BUILDSTDERR:      if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) {
BUILDSTDERR:                                                                                    ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from seaview.h:5,
BUILDSTDERR:                  from treedraw.h:4,
BUILDSTDERR:                  from treedraw.cxx:16:
BUILDSTDERR: /usr/include/string.h:136:12: note: in a call to function 'int strcmp(const char*, const char*)' declared here
BUILDSTDERR:  extern int strcmp (const char *__s1, const char *__s2)
BUILDSTDERR:             ^~~~~~
g++ -c    -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx
g++  -c -I.   -Dunix -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_Native_File_Chooser_FLTK.cxx
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/raa_acnuc.c
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/parser.c
BUILDSTDERR: csrc/raa_acnuc.c: In function 'raa_bit1':
BUILDSTDERR: csrc/raa_acnuc.c:1083:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:  char *reponse;
BUILDSTDERR:        ^~~~~~~
BUILDSTDERR: csrc/raa_acnuc.c: In function 'raa_bit0':
BUILDSTDERR: csrc/raa_acnuc.c:1093:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:  char *reponse;
BUILDSTDERR:        ^~~~~~~
BUILDSTDERR: csrc/raa_acnuc.c: In function 'raa_copylist':
BUILDSTDERR: csrc/raa_acnuc.c:1114:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:  char *reponse;
BUILDSTDERR:        ^~~~~~~
BUILDSTDERR: csrc/raa_acnuc.c: In function 'raa_zerolist':
BUILDSTDERR: csrc/raa_acnuc.c:1124:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:  char *reponse;
BUILDSTDERR:        ^~~~~~~
BUILDSTDERR: csrc/raa_acnuc.c: In function 'raa_setliststate':
BUILDSTDERR: csrc/raa_acnuc.c:1134:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:  char *reponse, str_type[3];
BUILDSTDERR:        ^~~~~~~
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/md5.c
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/zsockr.c
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/misc_acnuc.c
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/dnapars.c
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/protpars.c
BUILDSTDERR: csrc/protpars.c: In function 'protpars':
BUILDSTDERR: csrc/protpars.c:2097:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(tree, L, 1, outtree);
BUILDSTDERR:      ^~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: csrc/dnapars.c: In function 'dnapars':
BUILDSTDERR: csrc/dnapars.c:1685:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(tree, L, 1, outtree);
BUILDSTDERR:      ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/seq.c
BUILDSTDERR: csrc/seq.c: In function 'collapsetree':
BUILDSTDERR: csrc/seq.c:4015:11: warning: variable 'j' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    long i, j, index, index2, numd;
BUILDSTDERR:            ^
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/phylip.c
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/lwl.c
BUILDSTDERR: csrc/phylip.c: In function 'scan_eoln':
BUILDSTDERR: csrc/phylip.c:161:8: warning: variable 'ch' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    char ch;
BUILDSTDERR:         ^~
BUILDSTDERR: csrc/lwl.c: In function 'prefastlwl':
BUILDSTDERR: csrc/lwl.c:412:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:  else
BUILDSTDERR:  ^~~~
BUILDSTDERR: csrc/lwl.c:414:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:   aa[9] = 14;/* agc S */
BUILDSTDERR:   ^~
BUILDSTDERR: csrc/lwl.c:417:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:  else
BUILDSTDERR:  ^~~~
BUILDSTDERR: csrc/lwl.c:419:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:   aa[11] = 14;/* agt S */
BUILDSTDERR:   ^~
BUILDSTDERR: csrc/lwl.c:422:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:  else
BUILDSTDERR:  ^~~~
BUILDSTDERR: csrc/lwl.c:424:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:   aa[13] = 7;/* atc I */
BUILDSTDERR:   ^~
BUILDSTDERR: csrc/lwl.c:469:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:  else
BUILDSTDERR:  ^~~~
BUILDSTDERR: csrc/lwl.c:471:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:   aa[57] = 10;/* tgc */
BUILDSTDERR:   ^~
BUILDSTDERR: csrc/phylip.c: In function 'stringnames_new':
BUILDSTDERR: csrc/phylip.c:2980:8: warning: variable 'len' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    long len, i;
BUILDSTDERR:         ^~~
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/bionj.c
gcc -c  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -Dunix -Icsrc csrc/phyml_util.c
BUILDSTDERR: csrc/phyml_util.c: In function 'Warn_And_Exit':
BUILDSTDERR: csrc/phyml_util.c:47:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:   fscanf(stdin,"%c",&c);
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~~~~~
g++ -o seaview   seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o  `fltk-config --use-images --ldflags` -ldl -lpthread -lz 
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.I7kkry
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64
+ cd seaview
+ rm -rf /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64
+ mkdir -p /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/seaview
+ mkdir -p /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/bin
+ mkdir -p /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64//usr/share/man/man1
+ install -m 755 seaview /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64//usr/bin
+ desktop-file-install --dir /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/applications /builddir/build/SOURCES/seaview.desktop
+ mkdir -p /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/pixmaps/
+ install -m 0644 -p seaview.xpm /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/pixmaps/seaview.xpm
+ install -m 0644 -p seaview.svg /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/pixmaps/seaview.svg
+ mkdir -p /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/appdata/
+ install -m 0644 -p seaview.appdata.xml /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/appdata/seaview.appdata.xml
+ install -m 644 seaview.1 /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64//usr/share/man/man1
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 4.6.2.1-3.fc29 --unique-debug-suffix -4.6.2.1-3.fc29.riscv64 --unique-debug-src-base seaview-4.6.2.1-3.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/seaview
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/bin/seaview
extracting debug info from /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/bin/seaview
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
BUILDSTDERR: 2956 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.HepUAD
Processing files: seaview-4.6.2.1-3.fc29.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.r3rAeJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd seaview
+ DOCDIR=/builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/doc/seaview
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/doc/seaview
+ cp -pr seaview.1.xml /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/doc/seaview
+ cp -pr seaview.html /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64/usr/share/doc/seaview
+ exit 0
Provides: application() application(seaview.desktop) metainfo() metainfo(seaview.appdata.xml) seaview = 4.6.2.1-3.fc29 seaview(riscv-64) = 4.6.2.1-3.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libdl.so.2()(64bit) libfltk.so.1.3()(64bit) libfltk_images.so.1.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: seaview-debugsource-4.6.2.1-3.fc29.riscv64
Provides: seaview-debugsource = 4.6.2.1-3.fc29 seaview-debugsource(riscv-64) = 4.6.2.1-3.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seaview-debuginfo-4.6.2.1-3.fc29.riscv64
Provides: debuginfo(build-id) = f104807b79e1d26d4cfc9ff409b8afdd05c69b5e seaview-debuginfo = 4.6.2.1-3.fc29 seaview-debuginfo(riscv-64) = 4.6.2.1-3.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: seaview-debugsource(riscv-64) = 4.6.2.1-3.fc29
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64
Wrote: /builddir/build/RPMS/seaview-4.6.2.1-3.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/seaview-debugsource-4.6.2.1-3.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/seaview-debuginfo-4.6.2.1-3.fc29.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ME3Mrh
+ umask 022
+ cd /builddir/build/BUILD
+ cd seaview
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/seaview-4.6.2.1-3.fc29.riscv64
+ exit 0
Child return code was: 0