Mock Version: 1.4.9
Mock Version: 1.4.9
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-maanova.spec'], chrootPath='/var/lib/mock/f31-build-98695-33069/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x200203c7b8>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-maanova.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1563926400
Wrote: /builddir/build/SRPMS/R-maanova-1.50.0-4.fc31.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-maanova.spec'], chrootPath='/var/lib/mock/f31-build-98695-33069/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x200203c7b8>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-maanova.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1563926400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.41r8c5
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf maanova
+ /usr/bin/mkdir -p maanova
+ cd maanova
+ /usr/bin/gzip -dc /builddir/build/SOURCES/maanova_1.50.0.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.DAg6b6
+ umask 022
+ cd /builddir/build/BUILD
+ cd maanova
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.qW9Mo6
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64
+ cd maanova
+ chmod -x maanova/inst/LICENSE.txt maanova/inst/README.txt maanova/inst/STATUS.txt maanova/inst/TODO.txt
+ chmod -x maanova/src/makeratio.c maanova/src/masvd.c maanova/src/shift.c maanova/src/util.c
+ /usr/bin/sed -i -e 's/\r$//' maanova/DESCRIPTION
+ mkdir -p /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library
+ R CMD INSTALL maanova -l /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library
BUILDSTDERR: * installing *source* package 'maanova' ...
BUILDSTDERR: ** using staged installation
BUILDSTDERR: ** libs
BUILDSTDERR: masvd.c:114:2: warning: "/*" within comment [-Wcomment]
BUILDSTDERR:   114 |  /* work on a copy of x */
BUILDSTDERR:       |   
BUILDSTDERR: masvd.c:154:1: warning: "/*" within comment [-Wcomment]
BUILDSTDERR:   154 | /*#ifndef IEEE_754
BUILDSTDERR:       |  
BUILDSTDERR: masvd.c:161:5: warning: "/*" within comment [-Wcomment]
BUILDSTDERR:   161 |     /* work on a copy of x */
BUILDSTDERR:       |      
BUILDSTDERR: masvd.c:165:2: warning: "/*" within comment [-Wcomment]
BUILDSTDERR:   165 |  /* ask for optimal size of work array */
BUILDSTDERR:       |   
BUILDSTDERR: masvd.c:189:2: warning: "/*" within comment [-Wcomment]
BUILDSTDERR:   189 |  /* ask for optimal size of work array */
BUILDSTDERR:       |   
BUILDSTDERR: shift.c: In function 'shift':
BUILDSTDERR: shift.c:27:13: warning: unused variable 'k' [-Wunused-variable]
BUILDSTDERR:    27 |   int i, j, k;
BUILDSTDERR:       |             ^
BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library/00LOCK-maanova/00new/maanova/libs
BUILDSTDERR: ** R
BUILDSTDERR: ** data
BUILDSTDERR: ** demo
BUILDSTDERR: ** inst
BUILDSTDERR: ** byte-compile and prepare package for lazy loading
BUILDSTDERR: ** help
BUILDSTDERR: *** installing help indices
BUILDSTDERR:     finding HTML links ... done
BUILDSTDERR: ** building package indices
BUILDSTDERR: ** installing vignettes
BUILDSTDERR: ** testing if installed package can be loaded from temporary location
BUILDSTDERR: ** checking absolute paths in shared objects and dynamic libraries
BUILDSTDERR: ** testing if installed package can be loaded from final location
BUILDSTDERR: ** testing if installed package keeps a record of temporary installation path
BUILDSTDERR: * DONE (maanova)
+ test -d maanova/src
+ cd maanova/src
+ rm -f makeratio.o masvd.o shift.o util.o maanova.so
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library/R.css
+ chmod -x /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library/maanova/TODO.txt
+ chmod -x /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library/maanova/STATUS.txt
+ chmod -x /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library/maanova/README.txt
+ chmod -x /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library/maanova/LICENSE.txt
+ chmod -x /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library/maanova/doc/maanova.Rnw
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.50.0-4.fc31 --unique-debug-suffix -1.50.0-4.fc31.riscv64 --unique-debug-src-base R-maanova-1.50.0-4.fc31.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/maanova
BUILDSTDERR: 26 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c makeratio.c -o makeratio.o
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c masvd.c -o masvd.o
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c shift.c -o shift.o
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c util.c -o util.o
gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o maanova.so makeratio.o masvd.o shift.o util.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -L -L -lgfortran -lm -L/usr/lib64/R/lib -lR
  converting help for package 'maanova'
    PairContrast                            html  
    Rmaanova.version                        html  
    abf1                                    html  
    adjPval                                 html  
    arrayview                               html  
    consensus                               html  
    dyeswapfilter                           html  
    fill.missing                            html  
    fitmaanova                              html  
    fom                                     html  
    geneprofile                             html  
    gridcheck                               html  
    kidney                                  html  
    maanova-internal                        html  
    macluster                               html  
    matest                                  html  
    read.madata                             html  
    resiplot                                html  
    riplot                                  html  
    subset.madata                           html  
    summarytable                            html  
    transform.madata                        html  
    varplot                                 html  
    volcano                                 html  
    write.madata                            html  
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library/maanova/libs/maanova.so
extracting debug info from /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64/usr/lib64/R/library/maanova/libs/maanova.so
original debug info size: 72kB, size after compression: 72kB
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Cn7xw5
+ umask 022
+ cd /builddir/build/BUILD
+ cd maanova
+ /usr/bin/R CMD check maanova
* using log directory '/builddir/build/BUILD/maanova/maanova.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: riscv64-redhat-linux-gnu (64-bit)
* using session charset: ASCII
* checking for file 'maanova/DESCRIPTION' ... OK
* this is package 'maanova' version '1.50.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'Rmpi'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'maanova' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... WARNING
Error: package or namespace load failed for 'maanova' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'BiocGenerics'
Execution halted
It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  'qvalue' 'snow'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  plot.consensus.hc plot.consensus.kmean print.madata
  print.summary.madata print.summary.mamodel subset.madata
  summary.madata summary.mamodel transform.madata transform.rawdata
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
fdr: no visible global function definition for 'qvalue'
matest: no visible global function definition for 'makeMPIcluster'
matest: no visible global function definition for 'clusterApply'
matest: no visible global function definition for 'clusterEvalQ'
matest: no visible global function definition for 'stopCluster'
Undefined global functions or variables:
  clusterApply clusterEvalQ makeMPIcluster qvalue stopCluster
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
BUILDSTDERR: See
BUILDSTDERR:   '/builddir/build/BUILD/maanova/maanova.Rcheck/00check.log'
BUILDSTDERR: for details.
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
* checking running R code from vignettes ...
  'maanova.Rnw'... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 4 NOTEs
Processing files: R-maanova-1.50.0-4.fc31.riscv64
Provides: R(maanova) = 1.50.0 R-maanova = 1.50.0-4.fc31 R-maanova(riscv-64) = 1.50.0-4.fc31
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: R(Biobase) R(grDevices) R(graphics) R(methods) R(stats) R(utils) R-core >= 2.10 ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libRlapack.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) rtld(GNU_HASH)
Suggests: R(qvalue) R(snow) R-qvalue R-snow
Enhances: R(Rmpi)
Processing files: R-maanova-debugsource-1.50.0-4.fc31.riscv64
Provides: R-maanova-debugsource = 1.50.0-4.fc31 R-maanova-debugsource(riscv-64) = 1.50.0-4.fc31
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-maanova-debuginfo-1.50.0-4.fc31.riscv64
Provides: R-maanova-debuginfo = 1.50.0-4.fc31 R-maanova-debuginfo(riscv-64) = 1.50.0-4.fc31 debuginfo(build-id) = 1e0d4e39acd6ba61f668b769d7d0f2ec083bdecb
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-maanova-debugsource(riscv-64) = 1.50.0-4.fc31
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64
Wrote: /builddir/build/RPMS/R-maanova-debugsource-1.50.0-4.fc31.riscv64.rpm
Wrote: /builddir/build/RPMS/R-maanova-debuginfo-1.50.0-4.fc31.riscv64.rpm
Wrote: /builddir/build/RPMS/R-maanova-1.50.0-4.fc31.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.zT5sd6
+ umask 022
+ cd /builddir/build/BUILD
+ cd maanova
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-maanova-1.50.0-4.fc31.riscv64
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
Child return code was: 0