Mock Version: 2.15 Mock Version: 2.15 Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f38-build-712622-94144/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1674086400 Wrote: /builddir/build/SRPMS/gromacs-2022.3-3.fc38.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f38-build-712622-94144/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1674086400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.MqTond + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf gromacs-2022.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/gromacs-2022.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2022.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/regressiontests-2022.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + install -Dpm644 /builddir/build/SOURCES/manual-2022.3.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/fftpack src/external/tng_io src/external/lmfit src/external/muparser + sed -i 's/set(_timeout [0-9]*)/set(_timeout 9000)/' src/testutils/TestMacros.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.GASwLf + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2022.3 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/28152/exe ']' ~/build/BUILD/gromacs-2022.3/serial ~/build/BUILD/gromacs-2022.3 +++ /usr/bin/readlink /proc/28152/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial + pushd serial + test -z '' + cp -al ../regressiontests-2022.3 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ echo -DGMX_X11=ON ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2022.3/serial/tests ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_DSSP_PROGRAM_PATH=/usr/bin/dssp -DGMX_VERSION_STRING_OF_FORK=Fedora38 -DGMX_SIMD=None -DGMX_X11=ON -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2022.3/serial/tests -DGMX_GPU=OpenCL -- The C compiler identification is GNU 13.0.1 -- The CXX compiler identification is GNU 13.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.11.2", minimum required is "3.7") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Checking for module 'mpi-c' -- Package 'mpi-c', required by 'virtual:world', not found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Checking for module 'mpi-cxx' -- Package 'mpi-cxx', required by 'virtual:world', not found -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- Using default binary suffix: "" -- Using default library suffix: "" -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib64/libX11.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for AMD and Intel GPUs). It may be replaced by different approaches in future releases of GROMACS. -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - Unknown vendor -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "1.6.1") -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Found Python: /usr/bin/python3.11 (found version "3.11.2") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.0") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:83 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:76 (find_package) src/gromacs/CMakeLists.txt:394 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Performing Test MUPARSER_LINKS_OK -- Performing Test MUPARSER_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (muparser) does not match the name of the calling package (Muparser). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindMuparser.cmake:79 (find_package_handle_standard_args) cmake/gmxManageMuparser.cmake:74 (find_package) src/gromacs/CMakeLists.txt:396 (gmx_manage_muparser) This warning is for project developers. Use -Wno-dev to suppress it. -- Found muparser: /usr/include (found version "2.3.4") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done (164.5s) -- Generating done (4.9s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2022.3 -B/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/CMakeFiles /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3/src/gromacs /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build /usr/bin/gmake -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build /usr/bin/gmake -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o [ 1%] Generating release version information cd /builddir/build/BUILD/gromacs-2022.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.11 -D PROJECT_VERSION=2022.3-Fedora38 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2022.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora38 -P /builddir/build/BUILD/gromacs-2022.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o -MF CMakeFiles/clFFT.dir/library/accessors.cpp.o.d -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/accessors.cpp [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/linearalgebra/eigensolver.cpp [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/errhandler.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' [ 1%] Built target release-version-info [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/tmpi_malloc.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -MF CMakeFiles/clFFT.dir/library/action.transpose.cpp.o.d -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/action.transpose.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/atomic.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/lock.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/linearalgebra/gmx_arpack.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/alltoall.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/p2p_protocol.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/barrier.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/p2p_send_recv.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/bcast.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/p2p_wait.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/collective.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/profile.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/comm.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/reduce.cpp [ 3%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o -MF CMakeFiles/clFFT.dir/library/enqueue.cpp.o.d -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/enqueue.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/event.cpp [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/reduce_fast.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/gather.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/scatter.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/group.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/tmpi_init.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/topology.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/list.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/type.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/scan.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/numa_malloc.cpp [ 5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/src/once.cpp [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -MF CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o.d -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/fft_binary_lookup.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/clFFT-build && /usr/bin/g++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -MF CMakeFiles/clFFT.dir/library/generator.copy.cpp.o.d -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/generator.copy.cpp [ 5%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/linearalgebra/matrix.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' [ 5%] Built target thread_mpi /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp [ 5%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o -MF CMakeFiles/linearalgebra.dir/nrjac.cpp.o.d -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/linearalgebra/nrjac.cpp /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3/src/gromacs/selection /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/selection /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' /usr/bin/gmake -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' [ 5%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/selection/parser.cpp In file included from /usr/include/CL/cl.h:20, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ *** WARNING *** there are active plugins, do not report this as a bug unless you can reproduce it without enabling any plugins. Event | Plugins PLUGIN_FINISH_UNIT | annobin: Generate final annotations PLUGIN_START_UNIT | annobin: Generate global annotations PLUGIN_ALL_PASSES_START | annobin: Generate per-function annotations PLUGIN_ALL_PASSES_END | annobin: Register per-function end symbols during RTL pass: pro_and_epilogue /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/generator.stockham.h: In function 'StockhamGenerator::SztToStr[abi:cxx11](unsigned long)': /builddir/build/BUILD/gromacs-2022.3/src/external/clFFT/src/library/generator.stockham.h:76:9: internal compiler error: in df_ref_record, at df-scan.cc:2632 76 | } | ^ [ 5%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/linearalgebra -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/linearalgebra/sparsematrix.cpp Please submit a full bug report, with preprocessed source. See for instructions. gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' [ 5%] Built target linearalgebra [ 5%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/selection/scanner.cpp /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2022.3 /builddir/build/BUILD/gromacs-2022.3/src/programs /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/programs /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' [ 5%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/programs/mdrun/mdrun.cpp [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/checkpointhelper.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/checkpointhelper.cpp:45: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 5%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/programs/mdrun/nonbonded_bench.cpp In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdlib/mdoutf.h:41, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/checkpointhelper.cpp:46: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ The bug is not reproducible, so it is likely a hardware or OS problem. gmake[2]: *** [src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make:135: src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o] Error 1 gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' gmake[1]: *** [CMakeFiles/Makefile2:6323: src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/all] Error 2 gmake[1]: *** Waiting for unfinished jobs.... [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/compositesimulatorelement.cpp [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/computeglobalselement.cpp [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/constraintelement.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' [ 5%] Built target mdrun_objlib [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/domdechelper.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/computeglobalselement.cpp:45: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdlib/md_support.h:41, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/computeglobalselement.cpp:50: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/energydata.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' [ 5%] Built target scanner [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/expandedensembleelement.cpp [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/firstorderpressurecoupling.cpp [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/forceelement.cpp In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdlib/mdoutf.h:41, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/energydata.cpp:51: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdrun/shellfc.h:40, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/forceelement.cpp:51: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/modularsimulator.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/modularsimulator.cpp:46: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdlib/md_support.h:41, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp:47: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/mttk.cpp [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/nosehooverchains.cpp In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/ewald/pme_load_balancing.h:49, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/modularsimulator.cpp:48: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/propagator.cpp [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/pullelement.cpp [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -MF CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d -o CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/referencetemperaturemanager.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/nbnxm/nbnxm.h:114, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:52: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/ewald/pme_load_balancing.h:49, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp:45: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/signallers.cpp [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdlib/update.h:42, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/propagator.cpp:50: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp:46: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/statepropagatordata.cpp [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/topologyholder.cpp In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/statepropagatordata.cpp:48: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /usr/include/CL/cl.h:20, from /usr/include/CL/opencl.h:24, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gmxopencl.h:61, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/gputraits_ocl.h:47, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/gpu_utils/devicebuffer_datatype.h:60, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/domdec/domdec.h:62, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/topologyholder.cpp:45: /usr/include/CL/cl_version.h:22:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)' 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)") | ^ In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/ewald/pme_load_balancing.h:49, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/simulatoralgorithm.cpp:48: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/trajectoryelement.cpp In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdlib/mdoutf.h:41, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/statepropagatordata.cpp:53: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/wallcycle.h:46, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdlib/mdoutf.h:41, from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/trajectoryelement.cpp:44: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/timing/cyclecounter.h:531:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 531 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o cd /builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/include -I/builddir/build/BUILD/gromacs-2022.3/src/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2022.3/src -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/gmxlib/include -I/builddir/build/BUILD/gromacs-2022.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2022.3/src/gromacs/mdtypes/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2022.3/src/external -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fopenmp -Wno-redundant-move -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp *** WARNING *** there are active plugins, do not report this as a bug unless you can reproduce it without enabling any plugins. Event | Plugins PLUGIN_FINISH_UNIT | annobin: Generate final annotations PLUGIN_START_UNIT | annobin: Generate global annotations PLUGIN_ALL_PASSES_START | annobin: Generate per-function annotations PLUGIN_ALL_PASSES_END | annobin: Register per-function end symbols during RTL pass: pro_and_epilogue In file included from /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/propagator.cpp:56: /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/simulatoralgorithm.h: In member function 'gmx::ModularSimulatorAlgorithmBuilder::registerExistingElement >(gmx::Propagator<(gmx::IntegrationStage)0>*)void': /builddir/build/BUILD/gromacs-2022.3/src/gromacs/modularsimulator/simulatoralgorithm.h:719:1: internal compiler error: Segmentation fault 719 | } | ^ Please submit a full bug report, with preprocessed source. See for instructions. The bug is not reproducible, so it is likely a hardware or OS problem. gmake[2]: *** [src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make:303: src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o] Error 1 gmake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' gmake[1]: *** [CMakeFiles/Makefile2:5837: src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/all] Error 2 gmake[1]: Leaving directory '/builddir/build/BUILD/gromacs-2022.3/serial/redhat-linux-build' gmake: *** [Makefile:169: all] Error 2 error: Bad exit status from /var/tmp/rpm-tmp.GASwLf (%build) Bad exit status from /var/tmp/rpm-tmp.GASwLf (%build) RPM build errors: Child return code was: 1 EXCEPTION: [Error()] Traceback (most recent call last): File "/usr/lib/python3.9/site-packages/mockbuild/trace_decorator.py", line 93, in trace result = func(*args, **kw) File "/usr/lib/python3.9/site-packages/mockbuild/util.py", line 600, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/gromacs.spec