Mock Version: 1.4.13
Mock Version: 1.4.13
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/elph.spec'], chrootPath='/var/lib/mock/f30-build-39444-22608/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x20026979e8>timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/elph.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Wrote: /builddir/build/SRPMS/elph-1.0.1-21.fc30.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/elph.spec'], chrootPath='/var/lib/mock/f30-build-39444-22608/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x20026979e8>timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/elph.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.NOx63k
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf ELPH
+ /usr/bin/gzip -dc /builddir/build/SOURCES/ELPH-1.0.1.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd ELPH
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (elph-chris.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .chris --fuzz=0
Patch #0 (elph-chris.patch):
patching file sources/elph.cc
patching file sources/GBase.h
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.GQ45WI
+ umask 022
+ cd /builddir/build/BUILD
+ cd ELPH
+ make -C sources -j4 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-exceptions -fno-rtti -D_REENTRANT'
make: Entering directory '/builddir/build/BUILD/ELPH/sources'
g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-exceptions -fno-rtti -D_REENTRANT -c elph.cc -o elph.o
g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-exceptions -fno-rtti -D_REENTRANT -c motif.cc -o motif.o
g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-exceptions -fno-rtti -D_REENTRANT -c GBase.cpp -o GBase.o
g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-exceptions -fno-rtti -D_REENTRANT -c GString.cpp -o GString.o
BUILDSTDERR: In file included from GString.h:8,
BUILDSTDERR:                  from elph.cc:5:
BUILDSTDERR: GBase.h: In function 'void swap(bool&, bool&)':
BUILDSTDERR: GBase.h:122:8: warning: operation on 'arg1' may be undefined [-Wsequence-point]
BUILDSTDERR:  { arg1 ^= arg2 ^= arg1 ^= arg2; }
BUILDSTDERR:    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from GBase.cpp:5:
BUILDSTDERR: GBase.h: In function 'void swap(bool&, bool&)':
BUILDSTDERR: GBase.h:122:8: warning: operation on 'arg1' may be undefined [-Wsequence-point]
BUILDSTDERR:  { arg1 ^= arg2 ^= arg1 ^= arg2; }
BUILDSTDERR:    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from GFastaFile.h:3,
BUILDSTDERR:                  from motif.h:8,
BUILDSTDERR:                  from motif.cc:4:
BUILDSTDERR: GBase.h: In function 'void swap(bool&, bool&)':
BUILDSTDERR: GBase.h:122:8: warning: operation on 'arg1' may be undefined [-Wsequence-point]
BUILDSTDERR:  { arg1 ^= arg2 ^= arg1 ^= arg2; }
BUILDSTDERR:    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from GString.h:8,
BUILDSTDERR:                  from GString.cpp:2:
BUILDSTDERR: GBase.h: In function 'void swap(bool&, bool&)':
BUILDSTDERR: GBase.h:122:8: warning: operation on 'arg1' may be undefined [-Wsequence-point]
BUILDSTDERR:  { arg1 ^= arg2 ^= arg1 ^= arg2; }
BUILDSTDERR:    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from elph.cc:5:
BUILDSTDERR: GString.h: At global scope:
BUILDSTDERR: GString.h:128:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
BUILDSTDERR:          GString& trim(char* c=" \t\n\r");
BUILDSTDERR:                                ^~~~~~~~~
BUILDSTDERR: GString.h:129:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
BUILDSTDERR:          GString& trimR(char* c=" \t\n\r"); //trim only right end
BUILDSTDERR:                                 ^~~~~~~~~
BUILDSTDERR: GString.h:131:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
BUILDSTDERR:          GString& trimL(char* c=" \t\n\r"); //trim only left end
BUILDSTDERR:                                 ^~~~~~~~~
BUILDSTDERR: GString.h:136:51: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
BUILDSTDERR:          size_t read(FILE* stream, char* delimiter="\n", size_t bufsize=4096);
BUILDSTDERR:                                                    ^~~~
BUILDSTDERR: In file included from GString.cpp:2:
BUILDSTDERR: GString.h: At global scope:
BUILDSTDERR: GString.h:128:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
BUILDSTDERR:          GString& trim(char* c=" \t\n\r");
BUILDSTDERR:                                ^~~~~~~~~
BUILDSTDERR: GString.h:129:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
BUILDSTDERR:          GString& trimR(char* c=" \t\n\r"); //trim only right end
BUILDSTDERR:                                 ^~~~~~~~~
BUILDSTDERR: GString.h:131:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
BUILDSTDERR:          GString& trimL(char* c=" \t\n\r"); //trim only left end
BUILDSTDERR:                                 ^~~~~~~~~
BUILDSTDERR: GString.h:136:51: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
BUILDSTDERR:          size_t read(FILE* stream, char* delimiter="\n", size_t bufsize=4096);
BUILDSTDERR:                                                    ^~~~
BUILDSTDERR: elph.cc: In function 'int main(int, char**)':
BUILDSTDERR: elph.cc:81:76: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
BUILDSTDERR:    GArgs args(argc, argv, "ho:abreglvdzxt:p:s:m:n:LEN=ITERNO=MAXLOOP=SGFNO=");
BUILDSTDERR:                                                                             ^
BUILDSTDERR: elph.cc: In function 'seqType Process_Options(GArgs*)':
BUILDSTDERR: elph.cc:178:12: warning: ignoring return value of 'int scanf(const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        scanf("%d",&motiflen);
BUILDSTDERR:        ~~~~~^~~~~~~~~~~~~~~~
BUILDSTDERR: elph.cc: In function 'int main(int, char**)':
BUILDSTDERR: elph.cc:134:30: warning: 'info' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      globAlignProb=M->optimize(globAlignProb,info,closest);
BUILDSTDERR:                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: motif.cc: In member function 'double Motif::findMotif(int, int, int, int, int)':
BUILDSTDERR: motif.cc:2876:14: warning: variable 'prevProb' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:        double prevProb=0;
BUILDSTDERR:               ^~~~~~~~
BUILDSTDERR: motif.cc:2878:14: warning: variable 'locMaxInfo' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:        double locMaxInfo=0;
BUILDSTDERR:               ^~~~~~~~~~
BUILDSTDERR: motif.cc: In constructor 'Motif::Motif(const char*, FILE*, seqType, const char*, const char*, int, int, int, int, int)':
BUILDSTDERR: motif.cc:908:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:     fgets(line,5000,M);
BUILDSTDERR:     ~~~~~^~~~~~~~~~~~~
g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-exceptions -fno-rtti -D_REENTRANT -c GArgs.cpp -o GArgs.o
BUILDSTDERR: In file included from GArgs.cpp:7:
BUILDSTDERR: GBase.h: In function 'void swap(bool&, bool&)':
BUILDSTDERR: GBase.h:122:8: warning: operation on 'arg1' may be undefined [-Wsequence-point]
BUILDSTDERR:  { arg1 ^= arg2 ^= arg1 ^= arg2; }
BUILDSTDERR:    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: motif.cc: In member function 'double Motif::findMDet(int)':
BUILDSTDERR: motif.cc:1222:9: warning: 'maxinfo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      diff=maxinfo-optinfo;
BUILDSTDERR:      ~~~~^~~~~~~~~~~~~~~~
BUILDSTDERR: motif.cc: In constructor 'Motif::Motif(const char*, FILE*, seqType, const char*, const char*, int, int, int, int, int)':
BUILDSTDERR: motif.cc:1045:29: warning: 'info' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        globAlignProb=optimize(globAlignProb,info,0);
BUILDSTDERR:                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
g++  -o elph elph.o motif.o GBase.o GString.o GArgs.o 
make: Leaving directory '/builddir/build/BUILD/ELPH/sources'
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.fafaci
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64
+ cd ELPH
+ rm -rf /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64
+ mkdir -p /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64/usr/bin
+ install -m 755 sources/elph /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64//usr/bin
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.0.1-21.fc30 --unique-debug-suffix -1.0.1-21.fc30.riscv64 --unique-debug-src-base elph-1.0.1-21.fc30.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ELPH
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64/usr/bin/elph
extracting debug info from /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64/usr/bin/elph
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
BUILDSTDERR: 299 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.aFEXDC
Processing files: elph-1.0.1-21.fc30.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.jhArdo
+ umask 022
+ cd /builddir/build/BUILD
+ cd ELPH
+ DOCDIR=/builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64/usr/share/doc/elph
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64/usr/share/doc/elph
+ cp -pr COPYRIGHT /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64/usr/share/doc/elph
+ cp -pr LICENSE /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64/usr/share/doc/elph
+ cp -pr README /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64/usr/share/doc/elph
+ cp -pr Readme.ELPH /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64/usr/share/doc/elph
+ cp -pr VERSION /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64/usr/share/doc/elph
+ exit 0
Provides: elph = 1.0.1-21.fc30 elph(riscv-64) = 1.0.1-21.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) rtld(GNU_HASH)
Processing files: elph-debugsource-1.0.1-21.fc30.riscv64
Provides: elph-debugsource = 1.0.1-21.fc30 elph-debugsource(riscv-64) = 1.0.1-21.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: elph-debuginfo-1.0.1-21.fc30.riscv64
Provides: debuginfo(build-id) = f64fc9a0c93f24136d12406e5f7ddbbdc68afb13 elph-debuginfo = 1.0.1-21.fc30 elph-debuginfo(riscv-64) = 1.0.1-21.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: elph-debugsource(riscv-64) = 1.0.1-21.fc30
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64
Wrote: /builddir/build/RPMS/elph-1.0.1-21.fc30.riscv64.rpm
Wrote: /builddir/build/RPMS/elph-debugsource-1.0.1-21.fc30.riscv64.rpm
Wrote: /builddir/build/RPMS/elph-debuginfo-1.0.1-21.fc30.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.NiEE9g
+ umask 022
+ cd /builddir/build/BUILD
+ cd ELPH
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/elph-1.0.1-21.fc30.riscv64
+ exit 0
Child return code was: 0