Mock Version: 1.4.9
Mock Version: 1.4.9
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-ape.spec'], chrootPath='/var/lib/mock/f29-build-3981-980/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fd66d8>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-ape.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Wrote: /builddir/build/SRPMS/R-ape-5.1-1.fc29.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-ape.spec'], chrootPath='/var/lib/mock/f29-build-3981-980/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fd66d8>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-ape.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.XnNwoc
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf ape
+ /usr/bin/mkdir -p ape
+ cd ape
+ /usr/bin/gzip -dc /builddir/build/SOURCES/ape_5.1.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.2Rx3E7
+ umask 022
+ cd /builddir/build/BUILD
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.AZOOHm
+ cd ape
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-ape-5.1-1.fc29.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-ape-5.1-1.fc29.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-ape-5.1-1.fc29.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-ape-5.1-1.fc29.riscv64
+ cd ape
+ mkdir -p /builddir/build/BUILDROOT/R-ape-5.1-1.fc29.riscv64/usr/lib64/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-ape-5.1-1.fc29.riscv64/usr/lib64/R/library ape
BUILDSTDERR: * installing *source* package 'ape' ...
BUILDSTDERR: ** package 'ape' successfully unpacked and MD5 sums checked
BUILDSTDERR: ** libs
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c BIONJ.c -o BIONJ.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c NNI.c -o NNI.o
g++  -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c RcppExports.cpp -o RcppExports.o
BUILDSTDERR: In file included from /usr/lib64/R/library/Rcpp/include/RcppCommon.h:76,
BUILDSTDERR:                  from /usr/lib64/R/library/Rcpp/include/Rcpp.h:27,
BUILDSTDERR:                  from RcppExports.cpp:4:
BUILDSTDERR: /usr/lib64/R/library/Rcpp/include/Rcpp/sprintf.h: In function 'std::__cxx11::string Rcpp::sprintf(const char*, ...)':
BUILDSTDERR: /usr/lib64/R/library/Rcpp/include/Rcpp/sprintf.h:30:12: warning: unnecessary parentheses in declaration of 'ap' [-Wparentheses]
BUILDSTDERR:      va_list(ap);
BUILDSTDERR:             ^
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c SPR.c -o SPR.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c TBR.c -o TBR.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c additive.c -o additive.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c ape.c -o ape.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c bNNI.c -o bNNI.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c bionjs.c -o bionjs.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c bipartition.c -o bipartition.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c bitsplits.c -o bitsplits.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c delta_plot.c -o delta_plot.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c dist_dna.c -o dist_dna.o
BUILDSTDERR: dist_dna.c: In function 'dist_dna':
BUILDSTDERR: dist_dna.c:1173:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:               else distDNA_raw(x, n, s, d, 1); break;
BUILDSTDERR:               ^~~~
BUILDSTDERR: dist_dna.c:1173:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:               else distDNA_raw(x, n, s, d, 1); break;
BUILDSTDERR:                                                ^~~~~
BUILDSTDERR: dist_dna.c:1175:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:               else distDNA_JC69(x, n, s, d, variance, var, gamma, alpha); break;
BUILDSTDERR:               ^~~~
BUILDSTDERR: dist_dna.c:1175:74: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:               else distDNA_JC69(x, n, s, d, variance, var, gamma, alpha); break;
BUILDSTDERR:                                                                           ^~~~~
BUILDSTDERR: dist_dna.c:1177:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:               else distDNA_K80(x, n, s, d, variance, var, gamma, alpha); break;
BUILDSTDERR:               ^~~~
BUILDSTDERR: dist_dna.c:1177:73: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:               else distDNA_K80(x, n, s, d, variance, var, gamma, alpha); break;
BUILDSTDERR:                                                                          ^~~~~
BUILDSTDERR: dist_dna.c:1179:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:               else distDNA_F81(x, n, s, d, BF, variance, var, gamma, alpha); break;
BUILDSTDERR:               ^~~~
BUILDSTDERR: dist_dna.c:1179:77: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:               else distDNA_F81(x, n, s, d, BF, variance, var, gamma, alpha); break;
BUILDSTDERR:                                                                              ^~~~~
BUILDSTDERR: dist_dna.c:1181:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:               else distDNA_K81(x, n, s, d, variance, var); break;
BUILDSTDERR:               ^~~~
BUILDSTDERR: dist_dna.c:1181:59: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:               else distDNA_K81(x, n, s, d, variance, var); break;
BUILDSTDERR:                                                            ^~~~~
BUILDSTDERR: dist_dna.c:1183:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:               else distDNA_F84(x, n, s, d, BF, variance, var); break;
BUILDSTDERR:               ^~~~
BUILDSTDERR: dist_dna.c:1183:63: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:               else distDNA_F84(x, n, s, d, BF, variance, var); break;
BUILDSTDERR:                                                                ^~~~~
BUILDSTDERR: dist_dna.c:1185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:               else distDNA_T92(x, n, s, d, BF, variance, var); break;
BUILDSTDERR:               ^~~~
BUILDSTDERR: dist_dna.c:1185:63: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:               else distDNA_T92(x, n, s, d, BF, variance, var); break;
BUILDSTDERR:                                                                ^~~~~
BUILDSTDERR: dist_dna.c:1187:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:               else distDNA_TN93(x, n, s, d, BF, variance, var, gamma, alpha); break;
BUILDSTDERR:               ^~~~
BUILDSTDERR: dist_dna.c:1187:78: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:               else distDNA_TN93(x, n, s, d, BF, variance, var, gamma, alpha); break;
BUILDSTDERR:                                                                               ^~~~~
BUILDSTDERR: dist_dna.c:1189:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:               else distDNA_GG95(x, n, s, d, variance, var); break;
BUILDSTDERR:               ^~~~
BUILDSTDERR: dist_dna.c:1189:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:               else distDNA_GG95(x, n, s, d, variance, var); break;
BUILDSTDERR:                                                             ^~~~~
BUILDSTDERR: dist_dna.c:1191:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                else distDNA_LogDet(x, n, s, d, variance, var); break;
BUILDSTDERR:                ^~~~
BUILDSTDERR: dist_dna.c:1191:63: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:                else distDNA_LogDet(x, n, s, d, variance, var); break;
BUILDSTDERR:                                                                ^~~~~
BUILDSTDERR: dist_dna.c:1194:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                else distDNA_ParaLin(x, n, s, d, variance, var); break;
BUILDSTDERR:                ^~~~
BUILDSTDERR: dist_dna.c:1194:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:                else distDNA_ParaLin(x, n, s, d, variance, var); break;
BUILDSTDERR:                                                                 ^~~~~
BUILDSTDERR: dist_dna.c:1196:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:               else distDNA_raw(x, n, s, d, 0); break;
BUILDSTDERR:               ^~~~
BUILDSTDERR: dist_dna.c:1196:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:               else distDNA_raw(x, n, s, d, 0); break;
BUILDSTDERR:                                                ^~~~~
BUILDSTDERR: dist_dna.c:1198:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:       else distDNA_TsTv(x, n, s, d, 1, 0); break;
BUILDSTDERR:       ^~~~
BUILDSTDERR: dist_dna.c:1198:43: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:       else distDNA_TsTv(x, n, s, d, 1, 0); break;
BUILDSTDERR:                                            ^~~~~
BUILDSTDERR: dist_dna.c:1200:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:       else distDNA_TsTv(x, n, s, d, 0, 0); break;
BUILDSTDERR:       ^~~~
BUILDSTDERR: dist_dna.c:1200:43: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:       else distDNA_TsTv(x, n, s, d, 0, 0); break;
BUILDSTDERR:                                            ^~~~~
BUILDSTDERR: dist_dna.c: In function 'distDNA_LogDet':
BUILDSTDERR: dist_dna.c:805:17: warning: 'm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      case 72 : m += 4; break;\
BUILDSTDERR:                  ^~
BUILDSTDERR: dist_dna.c:834:20: note: 'm' was declared here
BUILDSTDERR:      int i1, i2, k, m, s1, s2, target, L, Ntab[16], ndim = 4, info, ipiv[16];
BUILDSTDERR:                     ^
BUILDSTDERR: dist_dna.c: In function 'distDNA_LogDet_pairdel':
BUILDSTDERR: dist_dna.c:805:17: warning: 'm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      case 72 : m += 4; break;\
BUILDSTDERR:                  ^~
BUILDSTDERR: dist_dna.c:855:20: note: 'm' was declared here
BUILDSTDERR:      int i1, i2, k, m, s1, s2, target, L, Ntab[16], ndim = 4, info, ipiv[16];
BUILDSTDERR:                     ^
BUILDSTDERR: dist_dna.c: In function 'distDNA_BH87':
BUILDSTDERR: dist_dna.c:805:17: warning: 'm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      case 72 : m += 4; break;\
BUILDSTDERR:                  ^~
BUILDSTDERR: dist_dna.c:882:32: note: 'm' was declared here
BUILDSTDERR:      int i1, i2, k, kb, s1, s2, m, Ntab[16], ROWsums[4];
BUILDSTDERR:                                 ^
BUILDSTDERR: dist_dna.c: In function 'distDNA_ParaLin':
BUILDSTDERR: dist_dna.c:805:17: warning: 'm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      case 72 : m += 4; break;\
BUILDSTDERR:                  ^~
BUILDSTDERR: dist_dna.c:959:28: note: 'm' was declared here
BUILDSTDERR:      int i1, i2, k, s1, s2, m, target, L, Ntab[16], ndim = 4, info, ipiv[16];
BUILDSTDERR:                             ^
BUILDSTDERR: dist_dna.c: In function 'distDNA_ParaLin_pairdel':
BUILDSTDERR: dist_dna.c:805:17: warning: 'm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      case 72 : m += 4; break;\
BUILDSTDERR:                  ^~
BUILDSTDERR: dist_dna.c:998:28: note: 'm' was declared here
BUILDSTDERR:      int i1, i2, k, s1, s2, m, target, L, Ntab[16], ndim = 4, info, ipiv[16];
BUILDSTDERR:                             ^
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c dist_nodes.c -o dist_nodes.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c ewLasso.c -o ewLasso.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c heap.c -o heap.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c mat_expo.c -o mat_expo.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c me.c -o me.o
BUILDSTDERR: me.c: In function 'detrifurcate':
BUILDSTDERR: me.c:295:11: warning: 'w' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    T->root = w;
BUILDSTDERR:    ~~~~~~~~^~~
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c me_balanced.c -o me_balanced.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c me_ols.c -o me_ols.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c mvr.c -o mvr.o
BUILDSTDERR: mvr.c: In function 'C_mvr':
BUILDSTDERR: mvr.c:98:27: warning: 'OTU2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    edge2[k + 1] = otu_label[OTU2];
BUILDSTDERR:                            ^
BUILDSTDERR: mvr.c:136:36: warning: 'OTU1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  edge_length[k+1]=D[give_index(OTU1,OTU2,n)] - edge_length[k];
BUILDSTDERR:                                     ^~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c mvrs.c -o mvrs.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c nj.c -o nj.o
BUILDSTDERR: nj.c: In function 'C_nj':
BUILDSTDERR: nj.c:95:27: warning: 'OTU2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    edge2[k + 1] = otu_label[OTU2];
BUILDSTDERR:                            ^
BUILDSTDERR: nj.c:94:23: warning: 'OTU1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    edge2[k] = otu_label[OTU1];
BUILDSTDERR:                        ^
BUILDSTDERR: nj.c:103:8: warning: 'smallest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    A = D[smallest];
BUILDSTDERR:         ^
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c njs.c -o njs.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c pic.c -o pic.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c plot_phylo.c -o plot_phylo.o
g++  -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c prop_part.cpp -o prop_part.o
BUILDSTDERR: In file included from /usr/lib64/R/library/Rcpp/include/RcppCommon.h:76,
BUILDSTDERR:                  from /usr/lib64/R/library/Rcpp/include/Rcpp.h:27,
BUILDSTDERR:                  from prop_part.cpp:8:
BUILDSTDERR: /usr/lib64/R/library/Rcpp/include/Rcpp/sprintf.h: In function 'std::__cxx11::string Rcpp::sprintf(const char*, ...)':
BUILDSTDERR: /usr/lib64/R/library/Rcpp/include/Rcpp/sprintf.h:30:12: warning: unnecessary parentheses in declaration of 'ap' [-Wparentheses]
BUILDSTDERR:      va_list(ap);
BUILDSTDERR:             ^
BUILDSTDERR: prop_part.cpp: In function 'Rcpp::List prop_part2(SEXP, int)':
BUILDSTDERR: prop_part.cpp:49:29: warning: unused variable 'KeepPartition' [-Wunused-variable]
BUILDSTDERR:      int nbtree = tr.size(), KeepPartition=1;
BUILDSTDERR:                              ^~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c rTrait.c -o rTrait.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c read_dna.c -o read_dna.o
BUILDSTDERR: read_dna.c: In function 'charVectorToDNAbinVector':
BUILDSTDERR: read_dna.c:341:51: warning: array subscript has type 'char' [-Wchar-subscripts]
BUILDSTDERR:      for (long i = 0; i < n; i++) rs[i] = tab_trans[xr[i]];
BUILDSTDERR:                                                    ^
g++  -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c reorder_Rcpp.cpp -o reorder_Rcpp.o
BUILDSTDERR: In file included from /usr/lib64/R/library/Rcpp/include/RcppCommon.h:76,
BUILDSTDERR:                  from /usr/lib64/R/library/Rcpp/include/Rcpp.h:27,
BUILDSTDERR:                  from reorder_Rcpp.cpp:8:
BUILDSTDERR: /usr/lib64/R/library/Rcpp/include/Rcpp/sprintf.h: In function 'std::__cxx11::string Rcpp::sprintf(const char*, ...)':
BUILDSTDERR: /usr/lib64/R/library/Rcpp/include/Rcpp/sprintf.h:30:12: warning: unnecessary parentheses in declaration of 'ap' [-Wparentheses]
BUILDSTDERR:      va_list(ap);
BUILDSTDERR:             ^
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c reorder_phylo.c -o reorder_phylo.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c treePop.c -o treePop.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c tree_build.c -o tree_build.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c tree_phylo.c -o tree_phylo.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c triangMtd.c -o triangMtd.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c triangMtds.c -o triangMtds.o
gcc -I"/usr/include/R" -DNDEBUG  -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c ultrametric.c -o ultrametric.o
g++ -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ape.so BIONJ.o NNI.o RcppExports.o SPR.o TBR.o additive.o ape.o bNNI.o bionjs.o bipartition.o bitsplits.o delta_plot.o dist_dna.o dist_nodes.o ewLasso.o heap.o mat_expo.o me.o me_balanced.o me_ols.o mvr.o mvrs.o nj.o njs.o pic.o plot_phylo.o prop_part.o rTrait.o read_dna.o reorder_Rcpp.o reorder_phylo.o treePop.o tree_build.o tree_phylo.o triangMtd.o triangMtds.o ultrametric.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -L -L -lgfortran -lm -L/usr/lib64/R/lib -lR
BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-ape-5.1-1.fc29.riscv64/usr/lib64/R/library/ape/libs
BUILDSTDERR: ** R
BUILDSTDERR: ** data
BUILDSTDERR: ** inst
BUILDSTDERR: ** byte-compile and prepare package for lazy loading
BUILDSTDERR: Error : package 'Rcpp' was installed by an R version with different internals; it needs to be reinstalled for use with this R version
BUILDSTDERR: ERROR: lazy loading failed for package 'ape'
BUILDSTDERR: * removing '/builddir/build/BUILDROOT/R-ape-5.1-1.fc29.riscv64/usr/lib64/R/library/ape'
BUILDSTDERR: error: Bad exit status from /var/tmp/rpm-tmp.AZOOHm (%install)
RPM build errors:
BUILDSTDERR:     Bad exit status from /var/tmp/rpm-tmp.AZOOHm (%install)
Child return code was: 1
EXCEPTION: [Error()]
Traceback (most recent call last):
  File "/usr/lib/python3.6/site-packages/mockbuild/trace_decorator.py", line 96, in trace
    result = func(*args, **kw)
  File "/usr/lib/python3.6/site-packages/mockbuild/util.py", line 626, in do
    raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode)
mockbuild.exception.Error: Command failed: 
 # bash --login -c /usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-ape.spec