Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/clipper.spec'], chrootPath='/var/lib/mock/f29-build-6508-1596/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/clipper.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/clipper-2.1-20160712.1.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/clipper.spec'], chrootPath='/var/lib/mock/f29-build-6508-1596/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/clipper.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TDWW5f + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf clipper-2.1.20160708 + /usr/bin/gzip -dc /builddir/build/SOURCES/clipper-2.1.20160708.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd clipper-2.1.20160708 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (clipper-pkgconfig.patch):' Patch #0 (clipper-pkgconfig.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file clipper.pc.in + echo 'Patch #1 (clipper-spacegroupdata.patch):' Patch #1 (clipper-spacegroupdata.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file clipper/core/spacegroup_data.h + sed -i 's/\r//' dox/coordtypes.dox + sed -i 's/\r//' dox/develop.dox + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.o8ItyI + umask 022 + cd /builddir/build/BUILD + cd clipper-2.1.20160708 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./build-aux/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./build-aux/config.sub BUILDSTDERR: ++ basename ./build-aux/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub '/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./build-aux/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./build-aux/config.guess BUILDSTDERR: ++ basename ./build-aux/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess '/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh + ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-contrib --enable-phs --enable-cns --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-fortran --enable-shared --disable-static checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for riscv64-koji-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for riscv64-koji-linux-gnu-g++... no checking for riscv64-koji-linux-gnu-c++... no checking for riscv64-koji-linux-gnu-gpp... no checking for riscv64-koji-linux-gnu-aCC... no checking for riscv64-koji-linux-gnu-CC... no checking for riscv64-koji-linux-gnu-cxx... no checking for riscv64-koji-linux-gnu-cc++... no checking for riscv64-koji-linux-gnu-cl.exe... no checking for riscv64-koji-linux-gnu-FCC... no checking for riscv64-koji-linux-gnu-KCC... no checking for riscv64-koji-linux-gnu-RCC... no checking for riscv64-koji-linux-gnu-xlC_r... no checking for riscv64-koji-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for riscv64-koji-linux-gnu-ar... no checking for riscv64-koji-linux-gnu-lib... no checking for riscv64-koji-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking build system type... riscv64-koji-linux-gnu checking host system type... riscv64-koji-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert riscv64-koji-linux-gnu file names to riscv64-koji-linux-gnu format... func_convert_file_noop checking how to convert riscv64-koji-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for riscv64-koji-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for riscv64-koji-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for riscv64-koji-linux-gnu-ar... ar checking for archiver @FILE support... @ checking for riscv64-koji-linux-gnu-strip... no checking for strip... strip checking for riscv64-koji-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for riscv64-koji-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for riscv64-koji-linux-gnu-g77... no checking for riscv64-koji-linux-gnu-xlf... no checking for riscv64-koji-linux-gnu-f77... no checking for riscv64-koji-linux-gnu-frt... no checking for riscv64-koji-linux-gnu-pgf77... no checking for riscv64-koji-linux-gnu-cf77... no checking for riscv64-koji-linux-gnu-fort77... no checking for riscv64-koji-linux-gnu-fl32... no checking for riscv64-koji-linux-gnu-af77... no checking for riscv64-koji-linux-gnu-xlf90... no checking for riscv64-koji-linux-gnu-f90... no checking for riscv64-koji-linux-gnu-pgf90... no checking for riscv64-koji-linux-gnu-pghpf... no checking for riscv64-koji-linux-gnu-epcf90... no checking for riscv64-koji-linux-gnu-gfortran... no checking for riscv64-koji-linux-gnu-g95... no checking for riscv64-koji-linux-gnu-xlf95... no checking for riscv64-koji-linux-gnu-f95... no checking for riscv64-koji-linux-gnu-fort... no checking for riscv64-koji-linux-gnu-ifort... no checking for riscv64-koji-linux-gnu-ifc... no checking for riscv64-koji-linux-gnu-efc... no checking for riscv64-koji-linux-gnu-pgfortran... no checking for riscv64-koji-linux-gnu-pgf95... no checking for riscv64-koji-linux-gnu-lf95... no checking for riscv64-koji-linux-gnu-ftn... no checking for riscv64-koji-linux-gnu-nagfor... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for MMDB_CCIF_Init in -lmmdb2... yes checking mmdb2/mmdb_manager.h usability... yes checking mmdb2/mmdb_manager.h presence... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking ccp4/ccp4_general.h usability... yes checking ccp4/ccp4_general.h presence... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes minimol: yes cif: yes ccp4: yes cctbx: no fortran: yes + sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool + sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool + make -j4 make all-recursive make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708' Making all in clipper make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper' Making all in core make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o BUILDSTDERR: atomsf.cpp: In member function 'bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, clipper::ftype&, std::vector&) const': BUILDSTDERR: atomsf.cpp:657:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < params.size(); i++ ) if ( params[i] < 5 ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: atomsf.cpp:702:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < params.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: atomsf.cpp: In member function 'bool clipper::AtomShapeFn::rho_curv(const clipper::Coord_orth&, clipper::ftype&, std::vector&, clipper::Matrix&) const': BUILDSTDERR: atomsf.cpp:770:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < params.size(); i++ ) if ( params[i] < 5 ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: atomsf.cpp:772:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < params.size(); i++ ) if ( params[i] < 5 ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: atomsf.cpp:773:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int j = 0; j < params.size(); j++ ) if ( params[j] < 5 ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: atomsf.cpp: In member function 'bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, std::vector&) const': BUILDSTDERR: atomsf.cpp:806:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < params.size(); i++ ) grad[i] = g[params[i]]; BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: atomsf.cpp: In member function 'void clipper::AtomShapeFn::init(const clipper::String&, const ftype&)': BUILDSTDERR: atomsf.cpp:820:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < element.length(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp BUILDSTDERR: ramachandran.cpp: In member function 'void clipper::Prob_phi_2d::accumulate(const ftype32*)': BUILDSTDERR: ramachandran.cpp:2204:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: { for ( int i = 0; i < data_.size(); i++ ) data_[i] += table[i]; } BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: ramachandran.cpp: In member function 'void clipper::Prob_phi_2d::normalise()': BUILDSTDERR: ramachandran.cpp:2233:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < data_.size(); i++ ) s += data_[i]; BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: ramachandran.cpp:2235:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < data_.size(); i++ ) data_[i] *= s; BUILDSTDERR: ~~^~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache::~ObjectCache() [with T = clipper::Spgr_cacheobj]': BUILDSTDERR: clipper_instance.cpp:145:18: required from here BUILDSTDERR: clipper_instance.cpp:79:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) { BUILDSTDERR: clipper_instance.cpp: In instantiation of 'void clipper::ObjectCache::debug() const [with T = clipper::Spgr_cacheobj]': BUILDSTDERR: clipper_instance.cpp:145:18: required from here BUILDSTDERR: clipper_instance.cpp:139:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache::Reference clipper::ObjectCache::cache(const typename T::Key&) [with T = clipper::Spgr_cacheobj; typename T::Key = clipper::Spgr_descr]': BUILDSTDERR: clipper_instance.cpp:145:18: required from here BUILDSTDERR: clipper_instance.cpp:96:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) BUILDSTDERR: clipper_instance.cpp:105:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache::~ObjectCache() [with T = clipper::HKL_data_cacheobj]': BUILDSTDERR: clipper_instance.cpp:146:18: required from here BUILDSTDERR: clipper_instance.cpp:79:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) { BUILDSTDERR: clipper_instance.cpp: In instantiation of 'void clipper::ObjectCache::debug() const [with T = clipper::HKL_data_cacheobj]': BUILDSTDERR: clipper_instance.cpp:146:18: required from here BUILDSTDERR: clipper_instance.cpp:139:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache::Reference clipper::ObjectCache::cache(const typename T::Key&) [with T = clipper::HKL_data_cacheobj; typename T::Key = clipper::HKL_data_cacheobj::Key]': BUILDSTDERR: clipper_instance.cpp:146:18: required from here BUILDSTDERR: clipper_instance.cpp:96:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) BUILDSTDERR: clipper_instance.cpp:105:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache::~ObjectCache() [with T = clipper::Xmap_cacheobj]': BUILDSTDERR: clipper_instance.cpp:147:18: required from here BUILDSTDERR: clipper_instance.cpp:79:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) { BUILDSTDERR: clipper_instance.cpp: In instantiation of 'void clipper::ObjectCache::debug() const [with T = clipper::Xmap_cacheobj]': BUILDSTDERR: clipper_instance.cpp:147:18: required from here BUILDSTDERR: clipper_instance.cpp:139:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) BUILDSTDERR: clipper_instance.cpp: In instantiation of 'clipper::ObjectCache::Reference clipper::ObjectCache::cache(const typename T::Key&) [with T = clipper::Xmap_cacheobj; typename T::Key = clipper::Xmap_cacheobj::Key]': BUILDSTDERR: clipper_instance.cpp:147:18: required from here BUILDSTDERR: clipper_instance.cpp:96:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) BUILDSTDERR: clipper_instance.cpp:105:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*, std::allocator*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cache_.size(); i++ ) /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp BUILDSTDERR: fftmap.cpp: In member function 'void clipper::FFTmap_p1::debug() const': BUILDSTDERR: fftmap.cpp:253:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < datavec.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c resol_basisfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o BUILDSTDERR: fftmap.cpp: In instantiation of 'void clipper::FFTmap::set_real_data(const clipper::Coord_grid&, const T&) [with T = float]': BUILDSTDERR: fftmap.cpp:428:89: required from here BUILDSTDERR: fftmap.cpp:407:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int sym = 1; sym < isymop.size(); sym++ ) BUILDSTDERR: ~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: fftmap.cpp: In instantiation of 'void clipper::FFTmap::set_real_data(const clipper::Coord_grid&, const T&) [with T = double]': BUILDSTDERR: fftmap.cpp:432:89: required from here BUILDSTDERR: fftmap.cpp:407:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: fftmap.cpp: At global scope: BUILDSTDERR: fftmap.cpp:55:15: warning: 'dummy' defined but not used [-Wunused-variable] BUILDSTDERR: static float* dummy = (fftw_real*) NULL; BUILDSTDERR: ^~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_memory.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_memory.o BUILDSTDERR: resol_basisfn.cpp: In member function 'void clipper::Resolution_ordinal::init(const clipper::HKL_info&, const ftype&)': BUILDSTDERR: resol_basisfn.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < hist.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: resol_basisfn.cpp: In member function 'void clipper::Resolution_ordinal::init(const clipper::HKL_data_base&, const ftype&)': BUILDSTDERR: resol_basisfn.cpp:76:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < hist.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: resol_basisfn.cpp: In member function 'void clipper::Resolution_ordinal::init(const clipper::HKL_data_base&, const clipper::Cell&, const ftype&)': BUILDSTDERR: resol_basisfn.cpp:91:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < hist.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: clipper_memory.cpp: In destructor 'clipper::PropertyManager::~PropertyManager()': BUILDSTDERR: clipper_memory.cpp:63:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < property_.size(); i++ ) delete property_[i].second; BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: clipper_memory.cpp: In member function 'clipper::PropertyManager& clipper::PropertyManager::copy(const clipper::PropertyManager&)': BUILDSTDERR: clipper_memory.cpp:73:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < property_.size(); i++ ) delete property_[i].second; BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: clipper_memory.cpp:75:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < mgr.property_.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: clipper_memory.cpp: In member function 'const clipper::Property_base& clipper::PropertyManager::get_property(const string&) const': BUILDSTDERR: clipper_memory.cpp:99:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < property_.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: clipper_memory.cpp: In member function 'bool clipper::PropertyManager::exists_property(const string&) const': BUILDSTDERR: clipper_memory.cpp:116:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < property_.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: clipper_memory.cpp: In member function 'bool clipper::PropertyManager::delete_property(const string&)': BUILDSTDERR: clipper_memory.cpp:131:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, clipper::Property_base*> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < property_.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fftmap_sparse.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap_sparse.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c resol_fn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_fn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_compute.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_compute.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_message.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_message.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c resol_targetfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o BUILDSTDERR: fftmap_sparse.cpp:55:15: warning: 'dummy' defined but not used [-Wunused-variable] BUILDSTDERR: static float* dummy = (fftw_real*) NULL; BUILDSTDERR: ^~~~~ BUILDSTDERR: In file included from cell.h:50, BUILDSTDERR: from coords.h:49, BUILDSTDERR: from hkl_lookup.h:49, BUILDSTDERR: from hkl_info.h:49, BUILDSTDERR: from hkl_data.h:49, BUILDSTDERR: from resol_fn.h:48, BUILDSTDERR: from resol_fn.cpp:44: BUILDSTDERR: clipper_types.h: In instantiation of 'std::vector clipper::Matrix::solve(const std::vector&) const [with T = double]': BUILDSTDERR: resol_fn.cpp:180:32: required from here BUILDSTDERR: clipper_types.h:565:27: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( Array2d::rows() != b.size() ) /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_stats.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_stats.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_data.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rotation.cpp -fPIC -DPIC -o .libs/libclipper_core_la-rotation.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_test.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_test.o BUILDSTDERR: clipper_stats.cpp: In member function 'clipper::ftype clipper::Histogram::sum() const': BUILDSTDERR: clipper_stats.cpp:52:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < data.size(); i++ ) s += data[i]; BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: clipper_stats.cpp: In member function 'const clipper::Histogram& clipper::Histogram::operator+=(const clipper::Histogram&)': BUILDSTDERR: clipper_stats.cpp:70:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < data.size(); i++ ) data[i] += h.data[i]; BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: clipper_stats.cpp: In member function 'void clipper::Generic_ordinal::init(const std::vector&, int)': BUILDSTDERR: clipper_stats.cpp:87:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < values.size(); i++ ) range.include( values[i] ); BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: clipper_stats.cpp:89:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < values.size(); i++ ) accumulate( values[i] ); BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: clipper_stats.cpp: In member function 'void clipper::Generic_ordinal::prep_ordinal()': BUILDSTDERR: clipper_stats.cpp:120:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 1; i < hist.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: clipper_stats.cpp:122:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < hist.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: clipper_stats.cpp: In member function 'void clipper::Generic_ordinal::invert()': BUILDSTDERR: clipper_stats.cpp:131:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 1; i < hist.size()-1; i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: clipper_test.cpp: In member function 'bool clipper::Test_base::test(const clipper::String&, const double&)': BUILDSTDERR: clipper_test.cpp:66:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( count < data_val.size() ) { BUILDSTDERR: ~~~~~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: clipper_test.cpp:74:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: } else if ( count == data_val.size() ) { BUILDSTDERR: ~~~~~~^~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_datatypes.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_datatypes.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c spacegroup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_types.o BUILDSTDERR: spacegroup.cpp: In member function 'void clipper::Spgr_descr::Symop_codes::init_hall(const clipper::String&)': BUILDSTDERR: spacegroup.cpp:115:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( j = 0; j < token.length(); j++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:128:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( j = 0; j < token.length(); j++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:214:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( k = 0; k < trans[i].length(); k++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:256:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( i = 0; i < ops.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'void clipper::Spgr_descr::Symop_codes::init_symops(const clipper::String&)': BUILDSTDERR: spacegroup.cpp:264:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < symops.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::expand() const': BUILDSTDERR: spacegroup.cpp:280:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( i = 0; i < generators.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:284:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( l = 0; l < ops.size(); l++ ) BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:286:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( l == ops.size() ) ops.push_back( k ); BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:289:24: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] BUILDSTDERR: } while ( ops.size() > size ); BUILDSTDERR: ~~~~~~~~~~~^~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::primitive_noninversion_ops() const': BUILDSTDERR: spacegroup.cpp:298:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < pops.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::inversion_ops() const': BUILDSTDERR: spacegroup.cpp:313:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( i = 0; i < ops.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::primitive_ops() const': BUILDSTDERR: spacegroup.cpp:324:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( i = 0; i < ops.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:325:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( j = 0; j < pops.size(); j++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:327:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( j == pops.size() ) pops.push_back( ops[i] ); BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::centering_ops() const': BUILDSTDERR: spacegroup.cpp:336:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < ops.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::laue_ops() const': BUILDSTDERR: spacegroup.cpp:347:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < ops.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::pgrp_ops() const': BUILDSTDERR: spacegroup.cpp:356:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < ops.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::patterson_ops() const': BUILDSTDERR: spacegroup.cpp:366:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < ops.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'clipper::Spgr_descr::Symop_codes clipper::Spgr_descr::Symop_codes::generator_ops() const': BUILDSTDERR: spacegroup.cpp:384:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 1; i < cens.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:385:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int j = 0; j < gend.size(); j++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:395:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 1; i < prms.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:396:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int j = 0; j < gend.size(); j++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:405:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = ncen; i < gens.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In member function 'unsigned int clipper::Spgr_descr::Symop_codes::hash() const': BUILDSTDERR: spacegroup.cpp:437:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int word = 0; word < data.size(); word++ ) { BUILDSTDERR: ~~~~~^~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In function 'bool clipper::reci_asu(const clipper::Spgr_descr::Symop_codes&, clipper::data::ASUfn)': BUILDSTDERR: spacegroup.cpp:680:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( i = 0; i < ops.size(); i++ ) symops[i] = ops[i].isymop(); BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:687:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( i = 0; i < symops.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:693:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( i != symops.size() ) return false; BUILDSTDERR: ~~^~~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:695:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( i = 0; i < symops.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:701:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( i == symops.size() ) return false; BUILDSTDERR: ~~^~~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In function 'clipper::Vec3 clipper::real_asu(const clipper::Spgr_descr::Symop_codes&)': BUILDSTDERR: spacegroup.cpp:713:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( i = 0; i < ops.size(); i++ ) symops[i] = ops[i].isymop(); BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:724:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( sym = 0; sym < symops.size(); sym++ ) BUILDSTDERR: ~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:732:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( sym = 0; sym < symops.size(); sym++ ) BUILDSTDERR: ~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:756:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int gui = 0; gui < gridlim.size(); gui++ ) BUILDSTDERR: ~~~~^~~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:757:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int gvi = 0; gvi < gridlim.size(); gvi++ ) BUILDSTDERR: ~~~~^~~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:758:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int gwi = 0; gwi < gridlim.size(); gwi++ ) BUILDSTDERR: ~~~~^~~~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp:763:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( j = 0; j < grids.size(); j++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: spacegroup.cpp: In constructor 'clipper::Spgr_cacheobj::Spgr_cacheobj(const Key&)': BUILDSTDERR: spacegroup.cpp:827:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < ops.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: clipper_types.cpp: In member function 'clipper::String clipper::String::trim() const': BUILDSTDERR: clipper_types.cpp:90:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( i = 0; i < length(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: clipper_types.cpp: In member function 'clipper::ftype clipper::String::rational() const': BUILDSTDERR: clipper_types.cpp:149:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( i = 0; i < s.length(); i++ ) if ( s[i] == '/' ) break; BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: clipper_types.cpp:150:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( i == s.length() ) return ( s.f() ); BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: In file included from clipper_types.cpp:43: BUILDSTDERR: clipper_types.h: In instantiation of 'std::vector clipper::Matrix::solve(const std::vector&) const [with T = float]': BUILDSTDERR: clipper_types.cpp:160:16: required from here BUILDSTDERR: clipper_types.h:565:27: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( Array2d::rows() != b.size() ) BUILDSTDERR: clipper_types.h: In instantiation of 'std::vector clipper::Matrix::solve(const std::vector&) const [with T = double]': BUILDSTDERR: clipper_types.cpp:165:16: required from here BUILDSTDERR: clipper_types.h:565:27: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_info.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_info.o BUILDSTDERR: hkl_info.cpp: In member function 'void clipper::HKL_info::add_hkl_list(const std::vector&)': BUILDSTDERR: hkl_info.cpp:224:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < add.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c spacegroup_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup_data.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_util.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_util.o BUILDSTDERR: clipper_util.cpp: In constructor 'clipper::Util::Util()': BUILDSTDERR: clipper_util.cpp:75:6: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] BUILDSTDERR: ((U32*)&nan_)->i = CLIPPER_NULL_MASK_32; BUILDSTDERR: ~^~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_lookup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_lookup.o BUILDSTDERR: hkl_lookup.cpp: In member function 'void clipper::HKL_lookup::init(const std::vector&)': BUILDSTDERR: hkl_lookup.cpp:59:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for (i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( nchr = 0; nchr < row.length(); nchr++ ) { BUILDSTDERR: ~~~~~^~~~~~~~~~~~~~ BUILDSTDERR: symop.cpp:75:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( npart = 0; npart < cols.size(); npart++ ) { BUILDSTDERR: ~~~~~~^~~~~~~~~~~~~ BUILDSTDERR: symop.cpp:79:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( nchr = 0; nchr < col.length(); nchr++ ) { BUILDSTDERR: ~~~~~^~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp BUILDSTDERR: container.cpp: In member function 'void clipper::Container::del_child(clipper::Container&)': BUILDSTDERR: container.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: container.cpp: In member function 'virtual void clipper::Container::update()': BUILDSTDERR: container.cpp:68:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) child(i).update(); BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: container.cpp: In destructor 'virtual clipper::Container::~Container()': BUILDSTDERR: container.cpp:109:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: container.cpp: In member function 'const clipper::Container& clipper::Container::child(const int&) const': BUILDSTDERR: container.cpp:159:19: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( i < 0 || i >= children.size() ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: container.cpp: In member function 'clipper::Container& clipper::Container::child(const int&)': BUILDSTDERR: container.cpp:166:19: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( i < 0 || i >= children.size() ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hkl_operators.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_operators.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_abcd(const clipper::datatypes::ABCD&) [with dtype = float; int N = 24]': BUILDSTDERR: hkl_operators.cpp:314:87: required from here BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_abcd(clipper::datatypes::ABCD&) const [with dtype = float; int N = 24]': BUILDSTDERR: hkl_operators.cpp:315:83: required from here BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_phi_fom(const clipper::datatypes::Phi_fom&) [with dtype = float; int N = 24]': BUILDSTDERR: hkl_operators.cpp:316:97: required from here BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_phi_fom(clipper::datatypes::Phi_fom&) const [with dtype = float; int N = 24]': BUILDSTDERR: hkl_operators.cpp:317:93: required from here BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_abcd(const clipper::datatypes::ABCD&) [with dtype = double; int N = 24]': BUILDSTDERR: hkl_operators.cpp:318:87: required from here BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_abcd(clipper::datatypes::ABCD&) const [with dtype = double; int N = 24]': BUILDSTDERR: hkl_operators.cpp:319:83: required from here BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_phi_fom(const clipper::datatypes::Phi_fom&) [with dtype = double; int N = 24]': BUILDSTDERR: hkl_operators.cpp:320:97: required from here BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_phi_fom(clipper::datatypes::Phi_fom&) const [with dtype = double; int N = 24]': BUILDSTDERR: hkl_operators.cpp:321:93: required from here BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_abcd(const clipper::datatypes::ABCD&) [with dtype = float; int N = 72]': BUILDSTDERR: hkl_operators.cpp:323:87: required from here BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_abcd(clipper::datatypes::ABCD&) const [with dtype = float; int N = 72]': BUILDSTDERR: hkl_operators.cpp:324:83: required from here BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_phi_fom(const clipper::datatypes::Phi_fom&) [with dtype = float; int N = 72]': BUILDSTDERR: hkl_operators.cpp:325:97: required from here BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_phi_fom(clipper::datatypes::Phi_fom&) const [with dtype = float; int N = 72]': BUILDSTDERR: hkl_operators.cpp:326:93: required from here BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_abcd(const clipper::datatypes::ABCD&) [with dtype = double; int N = 72]': BUILDSTDERR: hkl_operators.cpp:327:87: required from here BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_abcd(clipper::datatypes::ABCD&) const [with dtype = double; int N = 72]': BUILDSTDERR: hkl_operators.cpp:328:83: required from here BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_phi_fom(const clipper::datatypes::Phi_fom&) [with dtype = double; int N = 72]': BUILDSTDERR: hkl_operators.cpp:329:97: required from here BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_phi_fom(clipper::datatypes::Phi_fom&) const [with dtype = double; int N = 72]': BUILDSTDERR: hkl_operators.cpp:330:93: required from here BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_abcd(const clipper::datatypes::ABCD&) [with dtype = float; int N = 180]': BUILDSTDERR: hkl_operators.cpp:332:88: required from here BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_abcd(clipper::datatypes::ABCD&) const [with dtype = float; int N = 180]': BUILDSTDERR: hkl_operators.cpp:333:84: required from here BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_phi_fom(const clipper::datatypes::Phi_fom&) [with dtype = float; int N = 180]': BUILDSTDERR: hkl_operators.cpp:334:98: required from here BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_phi_fom(clipper::datatypes::Phi_fom&) const [with dtype = float; int N = 180]': BUILDSTDERR: hkl_operators.cpp:335:94: required from here BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_abcd(const clipper::datatypes::ABCD&) [with dtype = double; int N = 180]': BUILDSTDERR: hkl_operators.cpp:336:88: required from here BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_abcd(clipper::datatypes::ABCD&) const [with dtype = double; int N = 180]': BUILDSTDERR: hkl_operators.cpp:337:84: required from here BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_phi_fom(const clipper::datatypes::Phi_fom&) [with dtype = double; int N = 180]': BUILDSTDERR: hkl_operators.cpp:338:98: required from here BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_phi_fom(clipper::datatypes::Phi_fom&) const [with dtype = double; int N = 180]': BUILDSTDERR: hkl_operators.cpp:339:94: required from here BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_abcd(const clipper::datatypes::ABCD&) [with dtype = float; int N = 360]': BUILDSTDERR: hkl_operators.cpp:341:88: required from here BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_abcd(clipper::datatypes::ABCD&) const [with dtype = float; int N = 360]': BUILDSTDERR: hkl_operators.cpp:342:84: required from here BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_phi_fom(const clipper::datatypes::Phi_fom&) [with dtype = float; int N = 360]': BUILDSTDERR: hkl_operators.cpp:343:98: required from here BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_phi_fom(clipper::datatypes::Phi_fom&) const [with dtype = float; int N = 360]': BUILDSTDERR: hkl_operators.cpp:344:94: required from here BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_abcd(const clipper::datatypes::ABCD&) [with dtype = double; int N = 360]': BUILDSTDERR: hkl_operators.cpp:345:88: required from here BUILDSTDERR: hkl_operators.cpp:253:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:260:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_abcd(clipper::datatypes::ABCD&) const [with dtype = double; int N = 360]': BUILDSTDERR: hkl_operators.cpp:346:84: required from here BUILDSTDERR: hkl_operators.cpp:268:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::set_phi_fom(const clipper::datatypes::Phi_fom&) [with dtype = double; int N = 360]': BUILDSTDERR: hkl_operators.cpp:347:98: required from here BUILDSTDERR: hkl_operators.cpp:288:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:291:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q[p] = 0.0; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp: In instantiation of 'void clipper::LogPhaseProb::get_phi_fom(clipper::datatypes::Phi_fom&) const [with dtype = double; int N = 360]': BUILDSTDERR: hkl_operators.cpp:348:94: required from here BUILDSTDERR: hkl_operators.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) q0 += q[p]; BUILDSTDERR: ~~^~~~~~~~~~ BUILDSTDERR: hkl_operators.cpp:302:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < q.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c container_hkl.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_hkl.o BUILDSTDERR: In file included from hkl_datatypes.h:49, BUILDSTDERR: from hkl_operators.h:48, BUILDSTDERR: from hkl_operators.cpp:43: BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag_bool]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c map_interp.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_interp.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c container_map.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_map.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c map_utils.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_utils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c xmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-xmap.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c container_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_types.o BUILDSTDERR: In file included from xmap.cpp:43: BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = unsigned char]': BUILDSTDERR: xmap.cpp:231:16: required from here BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( index >= 0 && index < list.size() ) BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = char]': BUILDSTDERR: xmap.cpp:232:16: required from here BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = short unsigned int]': BUILDSTDERR: xmap.cpp:233:16: required from here BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = short int]': BUILDSTDERR: xmap.cpp:234:16: required from here BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = unsigned int]': BUILDSTDERR: xmap.cpp:235:16: required from here BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = int]': BUILDSTDERR: xmap.cpp:236:16: required from here BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = float]': BUILDSTDERR: xmap.cpp:237:16: required from here BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = double]': BUILDSTDERR: xmap.cpp:238:16: required from here BUILDSTDERR: xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nxmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-clipper_thread.lo `test -f 'clipper_thread.cpp' || echo './'`clipper_thread.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clipper_thread.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_thread.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c test_core.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_core.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libclipper_core_la-test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c test_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_data.o BUILDSTDERR: test_core.cpp: In member function 'bool clipper::Test_core::operator()()': BUILDSTDERR: test_core.cpp:153:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < resols.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: test_core.cpp:282:24: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < sizeof(pgs)/sizeof(pgs[0]); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: test_core.cpp:294:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int s = 0; s < hallsymbols.size(); s++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from hkl_datatypes.h:49, BUILDSTDERR: from test_data.h:49, BUILDSTDERR: from test_core.cpp:44: BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Phi_fom]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: In file included from hkl_datatypes.h:49, BUILDSTDERR: from test_data.h:49, BUILDSTDERR: from test_data.cpp:43: BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) BUILDSTDERR: hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF]': BUILDSTDERR: hkl_data.h:418:26: required from here BUILDSTDERR: hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] /bin/sh ../../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libclipper-core.la -rpath /usr/lib64 libclipper_core_la-atomsf.lo libclipper_core_la-coords.lo libclipper_core_la-nxmap_operator.lo libclipper_core_la-cell.lo libclipper_core_la-derivs.lo libclipper_core_la-ramachandran.lo libclipper_core_la-clipper_instance.lo libclipper_core_la-fftmap.lo libclipper_core_la-resol_basisfn.lo libclipper_core_la-clipper_memory.lo libclipper_core_la-fftmap_sparse.lo libclipper_core_la-resol_fn.lo libclipper_core_la-clipper_message.lo libclipper_core_la-hkl_compute.lo libclipper_core_la-resol_targetfn.lo libclipper_core_la-clipper_stats.lo libclipper_core_la-hkl_data.lo libclipper_core_la-rotation.lo libclipper_core_la-clipper_test.lo libclipper_core_la-hkl_datatypes.lo libclipper_core_la-spacegroup.lo libclipper_core_la-clipper_types.lo libclipper_core_la-hkl_info.lo libclipper_core_la-spacegroup_data.lo libclipper_core_la-clipper_util.lo libclipper_core_la-hkl_lookup.lo libclipper_core_la-symop.lo libclipper_core_la-container.lo libclipper_core_la-hkl_operators.lo libclipper_core_la-container_hkl.lo libclipper_core_la-map_interp.lo libclipper_core_la-container_map.lo libclipper_core_la-map_utils.lo libclipper_core_la-xmap.lo libclipper_core_la-container_types.lo libclipper_core_la-nxmap.lo libclipper_core_la-clipper_thread.lo libclipper_core_la-test_core.lo libclipper_core_la-test_data.lo -lsrfftw -lsfftw -lpthread -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o .libs/libclipper_core_la-atomsf.o .libs/libclipper_core_la-coords.o .libs/libclipper_core_la-nxmap_operator.o .libs/libclipper_core_la-cell.o .libs/libclipper_core_la-derivs.o .libs/libclipper_core_la-ramachandran.o .libs/libclipper_core_la-clipper_instance.o .libs/libclipper_core_la-fftmap.o .libs/libclipper_core_la-resol_basisfn.o .libs/libclipper_core_la-clipper_memory.o .libs/libclipper_core_la-fftmap_sparse.o .libs/libclipper_core_la-resol_fn.o .libs/libclipper_core_la-clipper_message.o .libs/libclipper_core_la-hkl_compute.o .libs/libclipper_core_la-resol_targetfn.o .libs/libclipper_core_la-clipper_stats.o .libs/libclipper_core_la-hkl_data.o .libs/libclipper_core_la-rotation.o .libs/libclipper_core_la-clipper_test.o .libs/libclipper_core_la-hkl_datatypes.o .libs/libclipper_core_la-spacegroup.o .libs/libclipper_core_la-clipper_types.o .libs/libclipper_core_la-hkl_info.o .libs/libclipper_core_la-spacegroup_data.o .libs/libclipper_core_la-clipper_util.o .libs/libclipper_core_la-hkl_lookup.o .libs/libclipper_core_la-symop.o .libs/libclipper_core_la-container.o .libs/libclipper_core_la-hkl_operators.o .libs/libclipper_core_la-container_hkl.o .libs/libclipper_core_la-map_interp.o .libs/libclipper_core_la-container_map.o .libs/libclipper_core_la-map_utils.o .libs/libclipper_core_la-xmap.o .libs/libclipper_core_la-container_types.o .libs/libclipper_core_la-nxmap.o .libs/libclipper_core_la-clipper_thread.o .libs/libclipper_core_la-test_core.o .libs/libclipper_core_la-test_data.o -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-core.so.2" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-core.so" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so") libtool: link: ( cd ".libs" && rm -f "libclipper-core.la" && ln -s "../libclipper-core.la" "libclipper-core.la" ) make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core' Making all in contrib make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o convolution_search.lo convolution_search.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sfcalc.lo sfcalc.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o edcalc.lo edcalc.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sfcalc_obs.lo sfcalc_obs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c edcalc.cpp -fPIC -DPIC -o .libs/edcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sfcalc.cpp -fPIC -DPIC -o .libs/sfcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c convolution_search.cpp -fPIC -DPIC -o .libs/convolution_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sfcalc_obs.cpp -fPIC -DPIC -o .libs/sfcalc_obs.o BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_mask::operator()(clipper::Xmap&, const clipper::Atom_list&) const [with T = float]': BUILDSTDERR: edcalc.cpp:224:16: required from here BUILDSTDERR: edcalc.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_mask::operator()(clipper::NXmap&, const clipper::Atom_list&) const [with T = float]': BUILDSTDERR: edcalc.cpp:224:16: required from here BUILDSTDERR: edcalc.cpp:87:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_mask::operator()(clipper::Xmap&, const clipper::Atom_list&) const [with T = double]': BUILDSTDERR: edcalc.cpp:225:16: required from here BUILDSTDERR: edcalc.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_mask::operator()(clipper::NXmap&, const clipper::Atom_list&) const [with T = double]': BUILDSTDERR: edcalc.cpp:225:16: required from here BUILDSTDERR: edcalc.cpp:87:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_iso::operator()(clipper::Xmap&, const clipper::Atom_list&) const [with T = float]': BUILDSTDERR: edcalc.cpp:226:16: required from here BUILDSTDERR: edcalc.cpp:114:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_iso::operator()(clipper::NXmap&, const clipper::Atom_list&) const [with T = float]': BUILDSTDERR: edcalc.cpp:226:16: required from here BUILDSTDERR: edcalc.cpp:144:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_iso::operator()(clipper::Xmap&, const clipper::Atom_list&) const [with T = double]': BUILDSTDERR: edcalc.cpp:227:16: required from here BUILDSTDERR: edcalc.cpp:114:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_iso::operator()(clipper::NXmap&, const clipper::Atom_list&) const [with T = double]': BUILDSTDERR: edcalc.cpp:227:16: required from here BUILDSTDERR: edcalc.cpp:144:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_aniso::operator()(clipper::Xmap&, const clipper::Atom_list&) const [with T = float]': BUILDSTDERR: edcalc.cpp:228:16: required from here BUILDSTDERR: edcalc.cpp:171:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_aniso::operator()(clipper::NXmap&, const clipper::Atom_list&) const [with T = float]': BUILDSTDERR: edcalc.cpp:228:16: required from here BUILDSTDERR: edcalc.cpp:203:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_aniso::operator()(clipper::Xmap&, const clipper::Atom_list&) const [with T = double]': BUILDSTDERR: edcalc.cpp:229:16: required from here BUILDSTDERR: edcalc.cpp:171:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: edcalc.cpp: In instantiation of 'bool clipper::EDcalc_aniso::operator()(clipper::NXmap&, const clipper::Atom_list&) const [with T = double]': BUILDSTDERR: edcalc.cpp:229:16: required from here BUILDSTDERR: edcalc.cpp:203:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: sfcalc_obs.cpp: In instantiation of 'bool clipper::SFcalc_obs_bulk::operator()(clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::Atom_list&) [with T = float]': BUILDSTDERR: sfcalc_obs.cpp:147:16: required from here BUILDSTDERR: sfcalc_obs.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atomu.size(); i++ ) if ( !atomu[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: sfcalc_obs.cpp: In instantiation of 'bool clipper::SFcalc_obs_bulk::operator()(clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::Atom_list&) [with T = double]': BUILDSTDERR: sfcalc_obs.cpp:149:16: required from here BUILDSTDERR: sfcalc_obs.cpp:61:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_iso_sum::operator()(clipper::HKL_data >&, const clipper::Atom_list&) const [with T = float]': BUILDSTDERR: sfcalc.cpp:192:16: required from here BUILDSTDERR: sfcalc.cpp:60:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_aniso_sum::operator()(clipper::HKL_data >&, const clipper::Atom_list&) const [with T = float]': BUILDSTDERR: sfcalc.cpp:193:16: required from here BUILDSTDERR: sfcalc.cpp:87:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_iso_fft::operator()(clipper::HKL_data >&, const clipper::Atom_list&) const [with T = float]': BUILDSTDERR: sfcalc.cpp:194:16: required from here BUILDSTDERR: sfcalc.cpp:117:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_aniso_fft::operator()(clipper::HKL_data >&, const clipper::Atom_list&) const [with T = float]': BUILDSTDERR: sfcalc.cpp:195:16: required from here BUILDSTDERR: sfcalc.cpp:159:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_iso_sum::operator()(clipper::HKL_data >&, const clipper::Atom_list&) const [with T = double]': BUILDSTDERR: sfcalc.cpp:197:16: required from here BUILDSTDERR: sfcalc.cpp:60:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_aniso_sum::operator()(clipper::HKL_data >&, const clipper::Atom_list&) const [with T = double]': BUILDSTDERR: sfcalc.cpp:198:16: required from here BUILDSTDERR: sfcalc.cpp:87:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_iso_fft::operator()(clipper::HKL_data >&, const clipper::Atom_list&) const [with T = double]': BUILDSTDERR: sfcalc.cpp:199:16: required from here BUILDSTDERR: sfcalc.cpp:117:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: sfcalc.cpp: In instantiation of 'bool clipper::SFcalc_aniso_fft::operator()(clipper::HKL_data >&, const clipper::Atom_list&) const [with T = double]': BUILDSTDERR: sfcalc.cpp:200:16: required from here BUILDSTDERR: sfcalc.cpp:159:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) if ( !atoms[i].is_null() ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49, BUILDSTDERR: from function_object_bases.h:50, BUILDSTDERR: from sfcalc.h:50, BUILDSTDERR: from sfcalc.cpp:43: BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data& clipper::HKL_data::operator=(const T&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: sfcalc.cpp:57:12: required from 'bool clipper::SFcalc_iso_sum::operator()(clipper::HKL_data >&, const clipper::Atom_list&) const [with T = float]' BUILDSTDERR: sfcalc.cpp:192:16: required from here BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) list[i] = value; BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data& clipper::HKL_data::operator=(const T&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: sfcalc.cpp:57:12: required from 'bool clipper::SFcalc_iso_sum::operator()(clipper::HKL_data >&, const clipper::Atom_list&) const [with T = double]' BUILDSTDERR: sfcalc.cpp:197:16: required from here BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49, BUILDSTDERR: from function_object_bases.h:50, BUILDSTDERR: from sfcalc_obs.h:49, BUILDSTDERR: from sfcalc_obs.cpp:43: BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o fffear.lo fffear.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fffear.cpp -fPIC -DPIC -o .libs/fffear.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sfscale.lo sfscale.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sfscale.cpp -fPIC -DPIC -o .libs/sfscale.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o function_object_bases.lo function_object_bases.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sfweight.lo sfweight.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c function_object_bases.cpp -fPIC -DPIC -o .libs/function_object_bases.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sfweight.cpp -fPIC -DPIC -o .libs/sfweight.o BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49, BUILDSTDERR: from function_object_bases.h:50, BUILDSTDERR: from sfscale.h:49, BUILDSTDERR: from sfscale.cpp:43: BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data& clipper::HKL_data::operator=(const T&) [with T = clipper::datatypes::F_sigF]': BUILDSTDERR: sfscale.cpp:156:7: required from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = float; clipper::ftype = double]' BUILDSTDERR: sfscale.cpp:258:327: required from here BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) list[i] = value; BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data& clipper::HKL_data::operator=(const T&) [with T = clipper::datatypes::I_sigI]': BUILDSTDERR: sfscale.cpp:156:7: required from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_binner; T = float; clipper::ftype = double]' BUILDSTDERR: sfscale.cpp:261:327: required from here BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data& clipper::HKL_data::operator=(const T&) [with T = clipper::datatypes::F_sigF]': BUILDSTDERR: sfscale.cpp:156:7: required from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = double; clipper::ftype = double]' BUILDSTDERR: sfscale.cpp:266:327: required from here BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data& clipper::HKL_data::operator=(const T&) [with T = clipper::datatypes::I_sigI]': BUILDSTDERR: sfscale.cpp:156:7: required from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_binner; T = double; clipper::ftype = double]' BUILDSTDERR: sfscale.cpp:269:327: required from here BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::I_sigI]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::I_sigI]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o mapfilter.lo mapfilter.cpp BUILDSTDERR: sfweight.cpp: In instantiation of 'void clipper::SFweight_spline::init(int, int, int) [with T = float]': BUILDSTDERR: sfweight.cpp:479:16: required from here BUILDSTDERR: sfweight.cpp:177:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::HLterms, std::allocator::HLterms> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int a = 0; a < hlterms.size(); a++ ) { BUILDSTDERR: sfweight.cpp: In instantiation of 'clipper::SFweight_spline::TargetResult clipper::SFweight_spline::TargetHL::operator()(clipper::HKL_class, const clipper::datatypes::F_sigF&, const clipper::datatypes::ABCD&, const clipper::datatypes::F_phi&, const ftype&, const ftype&, const std::vector::HLterms>&) [with T = float; clipper::ftype = double]': BUILDSTDERR: sfweight.cpp:479:16: required from here BUILDSTDERR: sfweight.cpp:129:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::HLterms, std::allocator::HLterms> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int a = a_zero; a < hlterms.size(); a += a_step ) { BUILDSTDERR: sfweight.cpp: In instantiation of 'void clipper::SFweight_spline::init(int, int, int) [with T = double]': BUILDSTDERR: sfweight.cpp:481:16: required from here BUILDSTDERR: sfweight.cpp:177:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::HLterms, std::allocator::HLterms> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int a = 0; a < hlterms.size(); a++ ) { BUILDSTDERR: sfweight.cpp: In instantiation of 'clipper::SFweight_spline::TargetResult clipper::SFweight_spline::TargetHL::operator()(clipper::HKL_class, const clipper::datatypes::F_sigF&, const clipper::datatypes::ABCD&, const clipper::datatypes::F_phi&, const ftype&, const ftype&, const std::vector::HLterms>&) [with T = double; clipper::ftype = double]': BUILDSTDERR: sfweight.cpp:481:16: required from here BUILDSTDERR: sfweight.cpp:129:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::HLterms, std::allocator::HLterms> >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int a = a_zero; a < hlterms.size(); a += a_step ) { libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mapfilter.cpp -fPIC -DPIC -o .libs/mapfilter.o BUILDSTDERR: In file included from ../core/cell.h:50, BUILDSTDERR: from ../core/coords.h:49, BUILDSTDERR: from ../core/hkl_lookup.h:49, BUILDSTDERR: from ../core/hkl_info.h:49, BUILDSTDERR: from ../core/hkl_data.h:49, BUILDSTDERR: from ../core/hkl_datatypes.h:49, BUILDSTDERR: from function_object_bases.h:50, BUILDSTDERR: from sfweight.h:49, BUILDSTDERR: from sfweight.cpp:43: BUILDSTDERR: ../core/clipper_types.h: In instantiation of 'std::vector clipper::Matrix::solve(const std::vector&) const [with T = double]': BUILDSTDERR: sfweight.cpp:303:26: required from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' BUILDSTDERR: sfweight.cpp:191:64: required from 'bool clipper::SFweight_spline::operator()(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&) [with T = float]' BUILDSTDERR: sfweight.cpp:479:16: required from here BUILDSTDERR: ../core/clipper_types.h:565:27: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( Array2d::rows() != b.size() ) BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49, BUILDSTDERR: from function_object_bases.h:50, BUILDSTDERR: from sfweight.h:49, BUILDSTDERR: from sfweight.cpp:43: BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::E_sigE]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::E_sigE]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag_bool]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o skeleton.lo skeleton.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c skeleton.cpp -fPIC -DPIC -o .libs/skeleton.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o originmatch.lo originmatch.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c originmatch.cpp -fPIC -DPIC -o .libs/originmatch.o BUILDSTDERR: skeleton.cpp: In member function 'virtual bool clipper::Skeleton_basic::operator()(clipper::Xmap&, const clipper::Xmap&) const': BUILDSTDERR: skeleton.cpp:126:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < index.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: In file included from function_object_bases.h:51, BUILDSTDERR: from skeleton.h:50, BUILDSTDERR: from skeleton.cpp:42: BUILDSTDERR: ../core/xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = int]': BUILDSTDERR: skeleton.cpp:128:36: required from here BUILDSTDERR: ../core/xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( index >= 0 && index < list.size() ) BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T1 = char; T2 = float]': BUILDSTDERR: skeleton.cpp:347:16: required from here BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < index.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T1 = char; T2 = double]': BUILDSTDERR: skeleton.cpp:348:16: required from here BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T1 = short int; T2 = float]': BUILDSTDERR: skeleton.cpp:349:16: required from here BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T1 = short int; T2 = double]': BUILDSTDERR: skeleton.cpp:350:16: required from here BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T1 = int; T2 = float]': BUILDSTDERR: skeleton.cpp:351:16: required from here BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: skeleton.cpp: In instantiation of 'bool clipper::Skeleton_fast::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T1 = int; T2 = double]': BUILDSTDERR: skeleton.cpp:352:16: required from here BUILDSTDERR: skeleton.cpp:271:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: In file included from function_object_bases.h:51, BUILDSTDERR: from skeleton.h:50, BUILDSTDERR: from skeleton.cpp:42: BUILDSTDERR: ../core/xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = char]': BUILDSTDERR: skeleton.cpp:273:7: required from 'bool clipper::Skeleton_fast::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T1 = char; T2 = float]' BUILDSTDERR: skeleton.cpp:347:16: required from here BUILDSTDERR: ../core/xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( index >= 0 && index < list.size() ) BUILDSTDERR: ../core/xmap.h: In instantiation of 'bool clipper::Xmap::set_data(const int&, const T&) [with T = short int]': BUILDSTDERR: skeleton.cpp:273:7: required from 'bool clipper::Skeleton_fast::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T1 = short int; T2 = float]' BUILDSTDERR: skeleton.cpp:349:16: required from here BUILDSTDERR: ../core/xmap.h:502:30: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49, BUILDSTDERR: from function_object_bases.h:50, BUILDSTDERR: from originmatch.h:49, BUILDSTDERR: from originmatch.cpp:43: BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o test_contrib.lo test_contrib.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c test_contrib.cpp -fPIC -DPIC -o .libs/test_contrib.o BUILDSTDERR: test_contrib.cpp: In member function 'bool clipper::Test_contrib::operator()()': BUILDSTDERR: test_contrib.cpp:113:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int s = 0; s < hallsymbols.size(); s++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: test_contrib.cpp:220:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < params_e1.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from ../core/hkl_datatypes.h:49, BUILDSTDERR: from function_object_bases.h:50, BUILDSTDERR: from mapfilter.h:50, BUILDSTDERR: from test_contrib.cpp:44: BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'clipper::HKL_data& clipper::HKL_data::operator=(const T&) [with T = clipper::datatypes::ABCD]': BUILDSTDERR: test_contrib.cpp:183:45: required from here BUILDSTDERR: ../core/hkl_data.h:551:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) list[i] = value; BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Phi_fom]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF]': BUILDSTDERR: ../core/hkl_data.h:418:26: required from here BUILDSTDERR: ../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] /bin/sh ../../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libclipper-contrib.la -rpath /usr/lib64 convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o ../core/.libs/libclipper-core.so -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so.2" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so") libtool: link: ( cd ".libs" && rm -f "libclipper-contrib.la" && ln -s "../libclipper-contrib.la" "libclipper-contrib.la" ) make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib' make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/minimol.lo minimol/minimol.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/container_minimol.lo minimol/container_minimol.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/minimol_data.lo minimol/minimol_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/minimol_data.cpp -fPIC -DPIC -o minimol/.libs/minimol_data.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mmdb/clipper_mmdb.cpp -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/container_minimol.cpp -fPIC -DPIC -o minimol/.libs/container_minimol.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/minimol.cpp -fPIC -DPIC -o minimol/.libs/minimol.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/minimol_io.lo minimol/minimol_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/minimol_io.cpp -fPIC -DPIC -o minimol/.libs/minimol_io.o BUILDSTDERR: minimol/minimol.cpp: In static member function 'static clipper::String clipper::MAtom::id_tidy(const clipper::String&)': BUILDSTDERR: minimol/minimol.cpp:99:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( pos == String::npos ) pos = id.length(); BUILDSTDERR: ~~~~^~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::Atom_list clipper::MMonomer::atom_list() const': BUILDSTDERR: minimol/minimol.cpp:149:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int a = 0; a < children.size(); a++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'void clipper::MMonomer::transform(clipper::RTop_orth)': BUILDSTDERR: minimol/minimol.cpp:155:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: { for ( int i = 0; i < children.size(); i++ ) children[i].transform( rt ); } BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::MMonomer clipper::MMonomer::select(const clipper::String&, clipper::MM::MODE) const': BUILDSTDERR: minimol/minimol.cpp:177:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) result.insert( children[i] ); BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:180:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int j = 0; j < list.size(); j++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:182:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'std::vector clipper::MMonomer::select_index(const clipper::String&, clipper::MM::MODE) const': BUILDSTDERR: minimol/minimol.cpp:199:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) result.push_back( i ); BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:202:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int j = 0; j < list.size(); j++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:204:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'int clipper::MMonomer::lookup(const clipper::String&, const clipper::MM::MODE&) const': BUILDSTDERR: minimol/minimol.cpp:234:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In static member function 'static clipper::String clipper::MMonomer::id_tidy(const clipper::String&)': BUILDSTDERR: minimol/minimol.cpp:300:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( pos == String::npos ) BUILDSTDERR: ~~~~^~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::Atom_list clipper::MPolymer::atom_list() const': BUILDSTDERR: minimol/minimol.cpp:318:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int m = 0; m < children.size(); m++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'void clipper::MPolymer::transform(clipper::RTop_orth)': BUILDSTDERR: minimol/minimol.cpp:325:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: { for ( int i = 0; i < children.size(); i++ ) children[i].transform( rt ); } BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::MPolymer clipper::MPolymer::select(const clipper::String&, clipper::MM::MODE) const': BUILDSTDERR: minimol/minimol.cpp:348:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:352:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int j = 0; j < list.size(); j++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:354:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'std::vector clipper::MPolymer::select_index(const clipper::String&, clipper::MM::MODE) const': BUILDSTDERR: minimol/minimol.cpp:371:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:375:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int j = 0; j < list.size(); j++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:377:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'int clipper::MPolymer::lookup(const clipper::String&, const clipper::MM::MODE&) const': BUILDSTDERR: minimol/minimol.cpp:407:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::Atom_list clipper::MModel::atom_list() const': BUILDSTDERR: minimol/minimol.cpp:482:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < children.size(); p++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'void clipper::MModel::transform(clipper::RTop_orth)': BUILDSTDERR: minimol/minimol.cpp:490:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: { for ( int i = 0; i < children.size(); i++ ) children[i].transform( rt ); } BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'clipper::MModel clipper::MModel::select(const clipper::String&, clipper::MM::MODE) const': BUILDSTDERR: minimol/minimol.cpp:514:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:518:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int j = 0; j < list.size(); j++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:520:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'std::vector clipper::MModel::select_index(const clipper::String&, clipper::MM::MODE) const': BUILDSTDERR: minimol/minimol.cpp:537:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:541:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int j = 0; j < list.size(); j++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:543:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'int clipper::MModel::lookup(const clipper::String&, const clipper::MM::MODE&) const': BUILDSTDERR: minimol/minimol.cpp:572:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp: In member function 'std::vector clipper::MModel::select_atom_index(const clipper::String&, clipper::MM::MODE) const': BUILDSTDERR: minimol/minimol.cpp:658:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < mps.size(); p++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:661:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int m = 0; m < mms.size(); m++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~ BUILDSTDERR: minimol/minimol.cpp:664:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int a = 0; a < mas.size(); a++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp BUILDSTDERR: minimol/minimol_io.cpp: In member function 'void clipper::MMDBfile::export_minimol(const clipper::MiniMol&)': BUILDSTDERR: minimol/minimol_io.cpp:224:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < smod.data.size(); p++ ) { // loop over chains BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:229:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int r = 0; r < spol.data.size(); r++ ) { // loop over residues BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:234:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int a = 0; a < smon.data.size(); a++ ) { // loop over atoms BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:248:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < smod.data.size(); p++ ) { // loop over chains BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:255:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int r = 0; r < spol.data.size(); r++ ) { // loop over residues BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:262:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int a = 0; a < smon.data.size(); a++ ) { // loop over atoms BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:277:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < smod.data.size(); p++ ) { // loop over chains BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:283:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int r = 0; r < spol.data.size(); r++ ) { // loop over residues BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:289:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int a = 0; a < smon.data.size(); a++ ) { // loop over atoms BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:300:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int p = 0; p < smod.data.size(); p++ ) { // loop over chains BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:303:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int r = 0; r < spol.data.size(); r++ ) { // loop over residues BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:308:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( pos != String::npos ) BUILDSTDERR: ~~~~^~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:310:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int a = 0; a < smon.data.size(); a++ ) { // loop over atoms BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp: In member function 'void clipper::SEQfile::import_molecule_sequence(clipper::MMoleculeSequence&)': BUILDSTDERR: minimol/minimol_io.cpp:373:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int l = 0; l < lines.size(); l++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_io.cpp:386:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < line.length(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/minimol_seq.cpp -fPIC -DPIC -o minimol/.libs/minimol_seq.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp BUILDSTDERR: minimol/minimol_seq.cpp: In member function 'int clipper::MMoleculeSequence::lookup(const clipper::String&, const clipper::MM::MODE&) const': BUILDSTDERR: minimol/minimol_seq.cpp:78:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < children.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o BUILDSTDERR: minimol/minimol_utils.cpp: In constructor 'clipper::MAtomNonBond::MAtomNonBond(const clipper::MiniMol&, double)': BUILDSTDERR: minimol/minimol_utils.cpp:91:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < iatoms.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_utils.cpp:93:34: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( lookup[iatoms[i].first] == iatoms.size() ) BUILDSTDERR: minimol/minimol_utils.cpp: In member function 'std::vector clipper::MAtomNonBond::operator()(const clipper::Coord_orth&, double) const': BUILDSTDERR: minimol/minimol_utils.cpp:145:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < atoms.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~ BUILDSTDERR: minimol/minimol_utils.cpp: In member function 'void clipper::MAtomNonBond::debug() const': BUILDSTDERR: minimol/minimol_utils.cpp:157:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < lookup.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o phs/phs_io.lo phs/phs_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cif/cif_data_io.lo cif/cif_data_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o BUILDSTDERR: cif/cif_data_io.cpp: In member function 'void clipper::CIFfile::close_read()': BUILDSTDERR: cif/cif_data_io.cpp:202:7: warning: variable 'ret_val' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int ret_val = 0; BUILDSTDERR: ^~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o BUILDSTDERR: cif/cif_data_io.cpp:364:15: warning: 'D_sigma' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: x1[1] = D_sigma; BUILDSTDERR: ~~~~~~^~~~~~~~~ BUILDSTDERR: cif/cif_data_io.cpp:395:18: warning: 'sigI_plus' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: x_anom[1] = sigI_plus; BUILDSTDERR: ~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: cif/cif_data_io.cpp:397:18: warning: 'sigI_minus' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: x_anom[3] = sigI_minus; BUILDSTDERR: ~~~~~~~~~~^~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In function 'const std::vector clipper::mtz_assign(const clipper::String&, const clipper::String&, const clipper::String&, const int&)': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:206:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for (int i=0; i < list.size(); i++) mtz_names[i] = assign + "." + type + "." + list[i]; BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:213:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for (int i=0; i < list.size(); i++) mtz_names[i] = pref + list[i]; BUILDSTDERR: ~~^~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In function 'void clipper::write_spacegroup(CMtz::MTZ*, const clipper::Spacegroup&, const char&)': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:263:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] BUILDSTDERR: for ( int s = 0; s < sizeof(ccp4_code)/sizeof(ccp4_code[0]); s++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In function 'void clipper::write_hierarchy(CMtz::MTZ*, std::vector&)': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:345:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for (int x = 0; x < crystals.size(); x ++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:353:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for (int s = 0; s < crystals[x].datasets.size(); s ++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:358:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for (int c = 0; c < crystals[x].datasets[s].columns.size(); c ++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In function 'void clipper::reference_cols(CMtz::MTZ*, std::vector, std::vector >, std::vector >&, std::vector >&)': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:389:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( mcol = 0; mcol < lookup.size(); mcol++ ) BUILDSTDERR: ~~~~~^~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:392:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( mcol == lookup.size() ) BUILDSTDERR: ~~~~~^~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'bool clipper::CCP4MTZfile::match_path(const clipper::String&, int&, int&, int&)': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:405:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( x = 0; x < crystals.size(); x ++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:407:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( s = 0; s < crystals[x].datasets.size(); s ++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:409:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( c = 0; c < crystals[x].datasets[s].columns.size(); c ++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:413:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( x = 0; x < crystals.size(); x ++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:415:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( s = 0; s < crystals[x].datasets.size(); s ++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:419:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( x = 0; x < crystals.size(); x ++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::open_read(clipper::String)': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:490:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int h = 0; h < history_.size(); h++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::close_read()': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:558:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < lookup_i.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:570:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( lst = 0; lst < hkl_data_i.size(); lst++ ) hkl_data_i[lst]->update(); BUILDSTDERR: ~~~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:581:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( lst = 0; lst < cols.size(); lst++ ) { BUILDSTDERR: ~~~~^~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:583:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( col = 0; col < cols[lst].size(); col++ ) { BUILDSTDERR: ~~~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::close_write()': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:674:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int h = 0; h < history_.size(); h++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:675:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int c = 0; c < history_[h].size(); c++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:701:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( lst = 0; lst < cols.size(); lst++ ) { BUILDSTDERR: ~~~~^~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:705:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( col = 0; col < cols[lst].size(); col++ ) { BUILDSTDERR: ~~~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:718:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( c = 0; c < lookup_o.size(); c++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::open_append(clipper::String, clipper::String)': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:776:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int h = 0; h < history_.size(); h++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::close_append()': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:822:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < lookup_i.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:847:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int h = 0; h < history_.size(); h++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:848:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int c = 0; c < history_[h].size(); c++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:865:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < lookup_i.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:867:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( c = 0; c < lookup_o.size(); c++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:869:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( c == lookup_o.size() ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:885:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < cpcols.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:890:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( lst = 0; lst < cols.size(); lst++ ) { BUILDSTDERR: ~~~~^~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:894:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( col = 0; col < cols[lst].size(); col++ ) { BUILDSTDERR: ~~~~^~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:907:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( c = 0; c < lookup_o.size(); c++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'void clipper::CCP4MTZfile::import_hkl_list(clipper::HKL_info&)': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:974:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < lookup_i.size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'std::vector clipper::CCP4MTZfile::column_paths() const': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1361:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( x = 0; x < crystals.size(); x ++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1362:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( s = 0; s < crystals[x].datasets.size(); s ++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1363:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( c = 0; c < crystals[x].datasets[s].columns.size(); c ++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp: In member function 'std::vector clipper::CCP4MTZfile::column_labels() const': BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1449:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int x = 0; x < crystals.size(); x++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1450:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int s = 0; s < crystals[x].datasets.size(); s++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_mtz_io.cpp:1451:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int c = 0; c < crystals[x].datasets[s].columns.size(); c++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap&) [with T = unsigned char]': BUILDSTDERR: ccp4/ccp4_map_io.cpp:582:88: required from here BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int j = 0; j < strop.length(); j++ ) symop[j] = strop[j]; BUILDSTDERR: ~~^~~~~~~~~~~~~~~~ BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap&) [with T = char]': BUILDSTDERR: ccp4/ccp4_map_io.cpp:583:70: required from here BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap&) [with T = short unsigned int]': BUILDSTDERR: ccp4/ccp4_map_io.cpp:584:90: required from here BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap&) [with T = short int]': BUILDSTDERR: ccp4/ccp4_map_io.cpp:585:72: required from here BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap&) [with T = unsigned int]': BUILDSTDERR: ccp4/ccp4_map_io.cpp:586:86: required from here BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap&) [with T = int]': BUILDSTDERR: ccp4/ccp4_map_io.cpp:587:68: required from here BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap&) [with T = float]': BUILDSTDERR: ccp4/ccp4_map_io.cpp:588:76: required from here BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: ccp4/ccp4_map_io.cpp: In instantiation of 'void clipper::CCP4MAPfile::export_xmap(const clipper::Xmap&) [with T = double]': BUILDSTDERR: ccp4/ccp4_map_io.cpp:589:76: required from here BUILDSTDERR: ccp4/ccp4_map_io.cpp:308:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o BUILDSTDERR: In file included from ccp4/../core/container_hkl.h:50, BUILDSTDERR: from ccp4/ccp4_mtz_types.h:49, BUILDSTDERR: from ccp4/ccp4_mtz_io.h:49, BUILDSTDERR: from ccp4/ccp4_mtz_io.cpp:42: BUILDSTDERR: ccp4/../core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag]': BUILDSTDERR: ccp4/../core/hkl_data.h:418:26: required from here BUILDSTDERR: ccp4/../core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) BUILDSTDERR: ccp4/ccp4_utils.cpp: In constructor 'CCP4CommandInput::CCP4CommandInput(int, char**, bool)': BUILDSTDERR: ccp4/ccp4_utils.cpp:64:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( i != std::string::npos ) { BUILDSTDERR: ~~^~~~~~ BUILDSTDERR: ccp4/ccp4_utils.cpp:70:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( i != std::string::npos ) { BUILDSTDERR: ~~^~~~~~ BUILDSTDERR: ccp4/ccp4_utils.cpp:73:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: if ( i != std::string::npos ) { BUILDSTDERR: ~~^~~~~~ BUILDSTDERR: ccp4/ccp4_utils.cpp:86:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 1; i < size(); i++ ) { BUILDSTDERR: ~~^~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cns/cns_map_io.lo cns/cns_map_io.cpp BUILDSTDERR: cns/cns_hkl_io.cpp: In member function 'void clipper::CNS_HKLfile::close_read()': BUILDSTDERR: cns/cns_hkl_io.cpp:180:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < fphis_i.size(); i++ ) fphis_i[i].first->update(); BUILDSTDERR: ~~^~~~~~~~~~~~~~~~ BUILDSTDERR: cns/cns_hkl_io.cpp:200:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < fphis_i.size(); i++ ) fphis[i][0]=fphis[i][1]=0.0; BUILDSTDERR: ~~^~~~~~~~~~~~~~~~ BUILDSTDERR: cns/cns_hkl_io.cpp:224:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < fphis_i.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~ BUILDSTDERR: cns/cns_hkl_io.cpp:236:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < fphis_i.size(); i++ ) BUILDSTDERR: ~~^~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap&) [with T = unsigned char]': BUILDSTDERR: cns/cns_map_io.cpp:621:90: required from here BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: float cp[6]; BUILDSTDERR: ^~ BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap&) [with T = char]': BUILDSTDERR: cns/cns_map_io.cpp:622:72: required from here BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap&) [with T = short unsigned int]': BUILDSTDERR: cns/cns_map_io.cpp:623:92: required from here BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap&) [with T = short int]': BUILDSTDERR: cns/cns_map_io.cpp:624:74: required from here BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap&) [with T = unsigned int]': BUILDSTDERR: cns/cns_map_io.cpp:625:88: required from here BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap&) [with T = int]': BUILDSTDERR: cns/cns_map_io.cpp:626:70: required from here BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap&) [with T = float]': BUILDSTDERR: cns/cns_map_io.cpp:627:78: required from here BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: cns/cns_map_io.cpp: In instantiation of 'void clipper::CNSMAPfile::export_nxmap(const clipper::NXmap&) [with T = double]': BUILDSTDERR: cns/cns_map_io.cpp:628:78: required from here BUILDSTDERR: cns/cns_map_io.cpp:412:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned char]': BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = char]': BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short unsigned int]': BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short int]': BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned int]': BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = int]': BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = float]': BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]': BUILDSTDERR: cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned char]': BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = char]': BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short unsigned int]': BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short int]': BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned int]': BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = int]': BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = float]': BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]': BUILDSTDERR: cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = float]': BUILDSTDERR: cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]': BUILDSTDERR: cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // could be blank line first BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; // read slice number line BUILDSTDERR: ~~~~~^~~~~~~~~~~ BUILDSTDERR: cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: fgets(buf,512,f);; BUILDSTDERR: ~~~~~^~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o fortran/f_interface.lo fortran/f_interface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o BUILDSTDERR: In file included from ../clipper/core/container_hkl.h:50, BUILDSTDERR: from ../clipper/clipper.h:7, BUILDSTDERR: from fortran/f_interface.cpp:1: BUILDSTDERR: ../clipper/core/hkl_data.h: In instantiation of 'void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi]': BUILDSTDERR: ../clipper/core/hkl_data.h:418:26: required from here BUILDSTDERR: ../clipper/core/hkl_data.h:421:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::allocator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] BUILDSTDERR: for ( int i = 0; i < list.size(); i++ ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o mmdb/libclipper-mmdb.la -rpath /usr/lib64 mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o mmdb/.libs/clipper_mmdb.o core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o phs/libclipper-phs.la -rpath /usr/lib64 phs/phs_io.lo core/libclipper-core.la -lm libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cif/libclipper-cif.la -rpath /usr/lib64 cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o phs/.libs/phs_io.o core/.libs/libclipper-core.so -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o cif/.libs/cif_data_io.o core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2") libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so") libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o fortran/libclipper-fortran.la -rpath /usr/lib64 fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2") libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so") libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o minimol/libclipper-minimol.la -rpath /usr/lib64 minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o fortran/.libs/f_interface.o core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2") libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so") libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" ) libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so.2" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so.2") libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so") libtool: link: ( cd "minimol/.libs" && rm -f "libclipper-minimol.la" && ln -s "../libclipper-minimol.la" "libclipper-minimol.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cns/libclipper-cns.la -rpath /usr/lib64 cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ccp4/libclipper-ccp4.la -rpath /usr/lib64 ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o core/.libs/libclipper-core.so -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o core/.libs/libclipper-core.so -lccp4c -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" ) libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper' Making all in examples make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/examples' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/examples' make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708' make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708' Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bgQ0CY + exit 0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64 + cd clipper-2.1.20160708 + rm -rf /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64 + make install DESTDIR=/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64 'INSTALL=install -p' 'CPPROG=cp -p' Making install in clipper make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper' Making install in core make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core' make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64' /bin/sh ../../libtool --mode=install install -p libclipper-core.la '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64' libtool: install: install -p .libs/libclipper-core.so.2.0.1 /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-core.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: install -p .libs/libclipper-core.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-core.la BUILDSTDERR: libtool: warning: remember to run 'libtool --finish /usr/lib64' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/core' install -p -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/core' install -p -m 644 test_data.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/core' make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/core' Making install in contrib make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib' make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64' /bin/sh ../../libtool --mode=install install -p libclipper-contrib.la '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64' BUILDSTDERR: libtool: warning: relinking 'libclipper-contrib.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libclipper-contrib.la -rpath /usr/lib64 convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: install -p .libs/libclipper-contrib.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-contrib.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: install -p .libs/libclipper-contrib.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-contrib.la BUILDSTDERR: libtool: warning: remember to run 'libtool --finish /usr/lib64' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/contrib' install -p -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/contrib' make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper/contrib' make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper' make[3]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64' /bin/sh ../libtool --mode=install install -p mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64' BUILDSTDERR: libtool: warning: relinking 'mmdb/libclipper-mmdb.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o mmdb/libclipper-mmdb.la -rpath /usr/lib64 mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: install -p mmdb/.libs/libclipper-mmdb.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-mmdb.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: install -p mmdb/.libs/libclipper-mmdb.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-mmdb.la BUILDSTDERR: libtool: warning: relinking 'minimol/libclipper-minimol.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o minimol/libclipper-minimol.la -rpath /usr/lib64 minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: install -p minimol/.libs/libclipper-minimol.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-minimol.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: install -p minimol/.libs/libclipper-minimol.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-minimol.la BUILDSTDERR: libtool: warning: relinking 'phs/libclipper-phs.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o phs/libclipper-phs.la -rpath /usr/lib64 phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o phs/.libs/phs_io.o -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: install -p phs/.libs/libclipper-phs.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-phs.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: install -p phs/.libs/libclipper-phs.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-phs.la BUILDSTDERR: libtool: warning: relinking 'cif/libclipper-cif.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cif/libclipper-cif.la -rpath /usr/lib64 cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o cif/.libs/cif_data_io.o -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -lmmdb2 -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: install -p cif/.libs/libclipper-cif.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cif.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: install -p cif/.libs/libclipper-cif.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cif.la BUILDSTDERR: libtool: warning: relinking 'ccp4/libclipper-ccp4.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ccp4/libclipper-ccp4.la -rpath /usr/lib64 ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -lccp4c -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: install -p ccp4/.libs/libclipper-ccp4.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-ccp4.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: install -p ccp4/.libs/libclipper-ccp4.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-ccp4.la BUILDSTDERR: libtool: warning: relinking 'cns/libclipper-cns.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cns/libclipper-cns.la -rpath /usr/lib64 cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: install -p cns/.libs/libclipper-cns.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cns.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: install -p cns/.libs/libclipper-cns.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cns.la BUILDSTDERR: libtool: warning: relinking 'fortran/libclipper-fortran.la' libtool: install: (cd /builddir/build/BUILD/clipper-2.1.20160708/clipper; /bin/sh "/builddir/build/BUILD/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -version-info 2:1 -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o fortran/libclipper-fortran.la -rpath /usr/lib64 fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-redhat-linux/8/crti.o /usr/lib/gcc/riscv64-redhat-linux/8/crtbeginS.o fortran/.libs/f_interface.o -L/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 -L/usr/lib64 -lclipper-core -lclipper-contrib -L/usr/lib/gcc/riscv64-redhat-linux/8 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/riscv64-redhat-linux/8/crtendS.o /usr/lib/gcc/riscv64-redhat-linux/8/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: install -p fortran/.libs/libclipper-fortran.so.2.0.1T /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-fortran.so.2.0.1 libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) libtool: install: (cd /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64 && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; }) libtool: install: install -p fortran/.libs/libclipper-fortran.lai /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-fortran.la BUILDSTDERR: libtool: warning: remember to run 'libtool --finish /usr/lib64' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/ccp4' install -p -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/ccp4' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/cif' install -p -m 644 cif/cif_data_io.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/cif' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/cns' install -p -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/cns' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/minimol' install -p -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/minimol' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/mmdb' install -p -m 644 mmdb/clipper_mmdb.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/mmdb' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/phs' install -p -m 644 phs/phs_io.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper/phs' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper' install -p -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/include/clipper' make[3]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper' make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/clipper' Making install in examples make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/examples' make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708/examples' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/examples' make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708/examples' make[1]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708' make[2]: Entering directory '/builddir/build/BUILD/clipper-2.1.20160708' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/pkgconfig' install -p -m 644 clipper.pc '/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/pkgconfig' make[2]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708' make[1]: Leaving directory '/builddir/build/BUILD/clipper-2.1.20160708' + rm -f /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-ccp4.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cif.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-cns.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-contrib.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-core.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-fortran.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-minimol.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-mmdb.la /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/lib64/libclipper-phs.la + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: clipper-2.1-20160712.1.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.r9r833 + umask 022 + cd /builddir/build/BUILD + cd clipper-2.1.20160708 + DOCDIR=/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper + cp -pr README /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper + cp -pr AUTHORS /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper + cp -pr COPYING /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper + exit 0 Provides: clipper = 2.1-20160712.1.fc29 clipper(riscv-64) = 2.1-20160712.1.fc29 libclipper-ccp4.so.2()(64bit) libclipper-cif.so.2()(64bit) libclipper-cns.so.2()(64bit) libclipper-contrib.so.2()(64bit) libclipper-core.so.2()(64bit) libclipper-fortran.so.2()(64bit) libclipper-minimol.so.2()(64bit) libclipper-mmdb.so.2()(64bit) libclipper-phs.so.2()(64bit) Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libccp4c.so.0()(64bit) libclipper-contrib.so.2()(64bit) libclipper-core.so.2()(64bit) libclipper-mmdb.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libmmdb2.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libsfftw.so.2()(64bit) libsrfftw.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: clipper-devel-2.1-20160712.1.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.FJbngy + umask 022 + cd /builddir/build/BUILD + cd clipper-2.1.20160708 + DOCDIR=/builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper-devel + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper-devel + cp -pr dox /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64/usr/share/doc/clipper-devel + exit 0 Provides: clipper-devel = 2.1-20160712.1.fc29 clipper-devel(riscv-64) = 2.1-20160712.1.fc29 pkgconfig(clipper) = 2.1.20160708 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libclipper-ccp4.so.2()(64bit) libclipper-cif.so.2()(64bit) libclipper-cns.so.2()(64bit) libclipper-contrib.so.2()(64bit) libclipper-core.so.2()(64bit) libclipper-fortran.so.2()(64bit) libclipper-minimol.so.2()(64bit) libclipper-mmdb.so.2()(64bit) libclipper-phs.so.2()(64bit) pkgconfig(libccp4c) pkgconfig(mmdb2) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64 Wrote: /builddir/build/RPMS/clipper-2.1-20160712.1.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/clipper-devel-2.1-20160712.1.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.1pHlUD + umask 022 + cd /builddir/build/BUILD + cd clipper-2.1.20160708 + /usr/bin/rm -rf /builddir/build/BUILDROOT/clipper-2.1-20160712.1.fc29.riscv64 + exit 0 Child return code was: 0