Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-IRanges.spec'], chrootPath='/var/lib/mock/f29-build-5046-1188/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-IRanges.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/R-IRanges-2.14.10-1.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-IRanges.spec'], chrootPath='/var/lib/mock/f29-build-5046-1188/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-IRanges.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.xVuqoA + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf IRanges + /usr/bin/mkdir -p IRanges + cd IRanges + /usr/bin/gzip -dc /builddir/build/SOURCES/IRanges_2.14.10.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.5sGJPU + umask 022 + cd /builddir/build/BUILD + cd IRanges + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.pBEkNw + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64 + cd IRanges + rm -rf /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64/usr/lib64/R/library + R CMD INSTALL IRanges -l /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64/usr/lib64/R/library BUILDSTDERR: * installing *source* package 'IRanges' ... BUILDSTDERR: ** libs gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c CompressedList_class.c -o CompressedList_class.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Grouping_class.c -o Grouping_class.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c IPosRanges_comparison.c -o IPosRanges_comparison.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c IRanges_class.c -o IRanges_class.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c IRanges_constructor.c -o IRanges_constructor.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c NCList.c -o NCList.o BUILDSTDERR: NCList.c:1173:13: warning: 'NCList_get_y_overlaps_rec' defined but not used [-Wunused-function] BUILDSTDERR: static void NCList_get_y_overlaps_rec(const NCList *x_nclist, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: NCList.c:202:22: warning: 'next_top_down' defined but not used [-Wunused-function] BUILDSTDERR: static const NCList *next_top_down(const NCList *nclist) BUILDSTDERR: ^~~~~~~~~~~~~ BUILDSTDERR: NCList.c: In function 'NCListAsINTSXP_print': BUILDSTDERR: NCList.c:674:23: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] BUILDSTDERR: sprintf(format, "%c0%d%c", '%', max_digits, 'd'); BUILDSTDERR: ^~ BUILDSTDERR: NCList.c:674:19: note: directive argument in the range [-2147483647, 2147483647] BUILDSTDERR: sprintf(format, "%c0%d%c", '%', max_digits, 'd'); BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:861, BUILDSTDERR: from /usr/include/R/Rinternals.h:39, BUILDSTDERR: from /usr/include/R/Rdefines.h:40, BUILDSTDERR: from /usr/lib64/R/library/S4Vectors/include/S4Vectors_defines.h:18, BUILDSTDERR: from ../inst/include/IRanges_defines.h:18, BUILDSTDERR: from IRanges.h:1, BUILDSTDERR: from NCList.c:5: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 15 bytes into a destination of size 10 BUILDSTDERR: return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: NCList.c: In function 'NCList_find_overlaps': BUILDSTDERR: NCList.c:1465:7: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: SEXP ans; BUILDSTDERR: ^~~ BUILDSTDERR: NCList.c: In function 'NCList_find_overlaps_in_groups': BUILDSTDERR: NCList.c:1546:7: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: SEXP ans; BUILDSTDERR: ^~~ gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_init_IRanges.c -o R_init_IRanges.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Ranges_class.c -o Ranges_class.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c RleViews_utils.c -o RleViews_utils.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c SimpleIRangesList_class.c -o SimpleIRangesList_class.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coverage_methods.c -o coverage_methods.o BUILDSTDERR: coverage_methods.c: In function 'compute_coverage_from_IRanges_holder': BUILDSTDERR: coverage_methods.c:503:28: warning: 'x_end' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (*out_ranges_are_tiles && x_end != cvg_len) BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ BUILDSTDERR: coverage_methods.c:419:21: note: 'x_end' was declared here BUILDSTDERR: i, j, x_start, x_end, shift_elt, tmp; BUILDSTDERR: ^~~~~ gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extractListFragments.c -o extractListFragments.o BUILDSTDERR: extractListFragments.c: In function 'find_partition_overlaps': BUILDSTDERR: extractListFragments.c:66:5: warning: 'split_partitions_buf' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: IntAE_insert_at(split_partitions_buf, BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: IntAE_get_nelt(split_partitions_buf), BUILDSTDERR: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: q_prev_end); BUILDSTDERR: ~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c inter_range_methods.c -o inter_range_methods.o gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o IRanges.so CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o -L/usr/lib64/R/lib -lR BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64/usr/lib64/R/library/IRanges/libs BUILDSTDERR: ** R BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: Creating a generic function for 'drop' from package 'base' in package 'IRanges' BUILDSTDERR: Creating a generic function for 'runmed' from package 'stats' in package 'IRanges' BUILDSTDERR: Creating a generic function for 'smoothEnds' from package 'stats' in package 'IRanges' BUILDSTDERR: Creating a generic function for 'chartr' from package 'base' in package 'IRanges' BUILDSTDERR: Creating a generic function for 'tolower' from package 'base' in package 'IRanges' BUILDSTDERR: Creating a generic function for 'toupper' from package 'base' in package 'IRanges' BUILDSTDERR: Creating a generic function for 'sub' from package 'base' in package 'IRanges' BUILDSTDERR: Creating a generic function for 'gsub' from package 'base' in package 'IRanges' BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices converting help for package 'IRanges' BUILDSTDERR: finding HTML links ... done BUILDSTDERR: AtomicList-class html BUILDSTDERR: finding level-2 HTML links ... done Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/AtomicList-class.Rd:307: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic AtomicList-utils html CompressedHitsList-class html CompressedList-class html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:38: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:39: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:44: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:60: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:66: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:81: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:84: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:87: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:89: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:95: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:100: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:105: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:110: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:118: file link 'classNameForDisplay' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:124: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:127: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic DataFrame-utils html DataFrameList-class html Grouping-class html Hits-class-leftovers html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Hits-class-leftovers.Rd:31: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Hits-class-leftovers.Rd:68: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic IPos-class html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IPos-class.Rd:96: file link 'c' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IPos-class.Rd:106: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic IPosRanges-class html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IPosRanges-class.Rd:199: file link 'c' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IPosRanges-class.Rd:224: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic IPosRanges-comparison html IRanges-class html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IRanges-class.Rd:97: file link 'c' in package 'S4Vectors' does not exist and so has been treated as a topic IRanges-constructor html IRanges-internals html IRanges-utils html IRangesList-class html IntegerRanges-class html IntegerRangesList-class html List-class-leftovers html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/List-class-leftovers.Rd:11: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/List-class-leftovers.Rd:35: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic MaskCollection-class html NCList-class html RangedData-class html RangedSelection-class html Rle-class-leftovers html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Rle-class-leftovers.Rd:22: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Rle-class-leftovers.Rd:71: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic RleViews-class html RleViewsList-class html Vector-class-leftovers html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Vector-class-leftovers.Rd:33: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Vector-class-leftovers.Rd:131: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic Views-class html ViewsList-class html coverage-methods html extractList html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:24: file link 'split' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:95: file link 'relistToClass' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:149: file link 'relistToClass' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:160: file link 'unsplit' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:163: file link 'split' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:166: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:166: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:167: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:167: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:169: file link 'relistToClass' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:170: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic extractListFragments html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractListFragments.Rd:87: file link 'relistToClass' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractListFragments.Rd:107: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic findOverlaps-methods html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:185: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:193: file link 'HitsList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:205: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:205: file link 'HitsList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:263: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:263: file link 'HitsList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:271: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:272: file link 'HitsList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:303: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:303: file link 'HitsList' in package 'S4Vectors' does not exist and so has been treated as a topic inter-range-methods html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/inter-range-methods.Rd:267: file link 'endoapply' in package 'S4Vectors' does not exist and so has been treated as a topic intra-range-methods html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:94: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:102: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:123: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:136: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:146: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:160: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:188: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:297: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:307: file link 'endoapply' in package 'S4Vectors' does not exist and so has been treated as a topic multisplit html nearest-methods html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/nearest-methods.Rd:148: file link 'breakTies' in package 'S4Vectors' does not exist and so has been treated as a topic range-squeezers html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/range-squeezers.Rd:37: file link 'Pairs' in package 'S4Vectors' does not exist and so has been treated as a topic read.Mask html reverse-methods html seqapply html setops-methods html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/setops-methods.Rd:91: file link 'Pairs' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/setops-methods.Rd:116: file link 'Pairs' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/setops-methods.Rd:166: file link 'mendoapply' in package 'S4Vectors' does not exist and so has been treated as a topic slice-methods html view-summarization-methods html BUILDSTDERR: ** building package indices BUILDSTDERR: ** installing vignettes BUILDSTDERR: ** testing if installed package can be loaded BUILDSTDERR: * DONE (IRanges) + test -d IRanges/src + cd IRanges/src + rm -f CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o IRanges.so + rm -rf /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64/usr/lib64/R/library/R.css + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.MzTQOx Processing files: R-IRanges-2.14.10-1.fc29.riscv64 Provides: R-IRanges = 2.14.10-1.fc29 R-IRanges(riscv-64) = 2.14.10-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) rtld(GNU_HASH) Processing files: R-IRanges-devel-2.14.10-1.fc29.riscv64 Provides: R-IRanges-devel = 2.14.10-1.fc29 R-IRanges-devel(riscv-64) = 2.14.10-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64 Wrote: /builddir/build/RPMS/R-IRanges-2.14.10-1.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-IRanges-devel-2.14.10-1.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.fBNuA6 + umask 022 + cd /builddir/build/BUILD + cd IRanges + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-IRanges-2.14.10-1.fc29.riscv64 + exit 0 Child return code was: 0