Mock Version: 1.4.21
Mock Version: 1.4.21
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-caTools.spec'], chrootPath='/var/lib/mock/f33-build-129403-40673/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3fe31a6700>timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-caTools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1582502400
Wrote: /builddir/build/SRPMS/R-caTools-1.18.0-1.fc33.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-caTools.spec'], chrootPath='/var/lib/mock/f33-build-129403-40673/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3fe31a6700>timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-caTools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1582502400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.SQSU8I
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf caTools
+ /usr/bin/mkdir -p caTools
+ cd caTools
+ /usr/bin/gzip -dc /builddir/build/SOURCES/caTools_1.18.0.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.IT09sJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd caTools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.HncnnH
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64
++ dirname /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64
+ cd caTools
+ mkdir -p /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library caTools
* installing *source* package 'caTools' ...
** package 'caTools' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c Gif2R.cpp -o Gif2R.o
g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c GifTools.cpp -o GifTools.o
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c caTools_init.c -o caTools_init.o
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c runfunc.c -o runfunc.o
runfunc.c: In function 'sum_exact':
runfunc.c:147:17: warning: 'partial[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
  147 |   *Out = partial[0];
      |          ~~~~~~~^~~
g++ -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o caTools.so Gif2R.o GifTools.o caTools_init.o runfunc.o -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library/00LOCK-caTools/00new/caTools/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'caTools'
    finding HTML links ... done
    ENVI                                    html  
    GIF                                     html  
    LogitBoost                              html  
    base64                                  html  
    caTools-internal                        html  
    caTools-package                         html  
    colAUC                                  html  
    combs                                   html  
    predict.LogitBoost                      html  
    runmad                                  html  
    runmean                                 html  
    runminmax                               html  
    runquantile                             html  
    runsd                                   html  
    sample.split                            html  
    sumexact                                html  
    trapz                                   html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (caTools)
+ test -d caTools/src
+ cd caTools/src
+ rm -f Gif2R.o GifTools.o caTools_init.o runfunc.o caTools.so
+ rm -f /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.18.0-1.fc33 --unique-debug-suffix -1.18.0-1.fc33.riscv64 --unique-debug-src-base R-caTools-1.18.0-1.fc33.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/caTools
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library/caTools/libs/caTools.so
extracting debug info from /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64/usr/lib64/R/library/caTools/libs/caTools.so
original debug info size: 184kB, size after compression: 180kB
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
183 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.H31HXK
+ umask 022
+ cd /builddir/build/BUILD
+ cd caTools
+ /usr/bin/R CMD check caTools
* using log directory '/builddir/build/BUILD/caTools/caTools.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: riscv64-redhat-linux-gnu (64-bit)
* using session charset: ASCII
* checking for file 'caTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'caTools' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.9/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'caTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown packages 'fields', 'spatstat', 'R2HTML', 'pixmap', 'gplots', 'RColorBrewer', 'epitools', 'XML', 'exactRankTests', 'coin', 'ROCR', 'Epi', 'verification', 'Hmisc', 'gtools', 'magic', 'zoo' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
  '/builddir/build/BUILD/caTools/caTools.Rcheck/00check.log'
for details.
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: R-caTools-1.18.0-1.fc33.riscv64
Provides: R(caTools) = 1.18.0 R-caTools = 1.18.0-1.fc33 R-caTools(riscv-64) = 1.18.0-1.fc33
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: R(bitops) R-core >= 3.6.0 ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) rtld(GNU_HASH)
Suggests: R(MASS) R(rpart)
Processing files: R-caTools-debugsource-1.18.0-1.fc33.riscv64
Provides: R-caTools-debugsource = 1.18.0-1.fc33 R-caTools-debugsource(riscv-64) = 1.18.0-1.fc33
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-caTools-debuginfo-1.18.0-1.fc33.riscv64
Provides: R-caTools-debuginfo = 1.18.0-1.fc33 R-caTools-debuginfo(riscv-64) = 1.18.0-1.fc33 debuginfo(build-id) = a6372a6c3baf84f16ff68fdc4fd348b27d9eade7
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-caTools-debugsource(riscv-64) = 1.18.0-1.fc33
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64
Wrote: /builddir/build/RPMS/R-caTools-debugsource-1.18.0-1.fc33.riscv64.rpm
Wrote: /builddir/build/RPMS/R-caTools-1.18.0-1.fc33.riscv64.rpm
Wrote: /builddir/build/RPMS/R-caTools-debuginfo-1.18.0-1.fc33.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.KZ1wUJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd caTools
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-caTools-1.18.0-1.fc33.riscv64
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0