Mock Version: 1.4.14 Mock Version: 1.4.14 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/f31-build-53268-27808/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1549152000 Wrote: /builddir/build/SRPMS/staden-io_lib-1.12.4-16.fc31.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/f31-build-53268-27808/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1549152000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Bx8TOZ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf io_lib-1.12.4 + /usr/bin/gzip -dc /builddir/build/SOURCES/io_lib-1.12.4.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd io_lib-1.12.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + mv io_lib-config.in staden-io_lib-config.in + sed -i s/libread/libstaden-read/g io_lib/Makefile.in progs/Makefile.in + sed -i s/lread/lstaden-read/ staden-io_lib-config.in + sed -i s/io_lib-config/staden-io_lib-config/g configure Makefile.in + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.QlLYc0 + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess BUILDSTDERR: ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub BUILDSTDERR: ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static '/usr/lib/rpm/redhat/config.guess' -> './config.guess' '/usr/lib/rpm/redhat/config.sub' -> './config.sub' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for riscv64-koji-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking build system type... riscv64-koji-linux-gnu checking host system type... riscv64-koji-linux-gnu checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for riscv64-koji-linux-gnu-g++... no checking for riscv64-koji-linux-gnu-c++... no checking for riscv64-koji-linux-gnu-gpp... no checking for riscv64-koji-linux-gnu-aCC... no checking for riscv64-koji-linux-gnu-CC... no checking for riscv64-koji-linux-gnu-cxx... no checking for riscv64-koji-linux-gnu-cc++... no checking for riscv64-koji-linux-gnu-cl.exe... no checking for riscv64-koji-linux-gnu-FCC... no checking for riscv64-koji-linux-gnu-KCC... no checking for riscv64-koji-linux-gnu-RCC... no checking for riscv64-koji-linux-gnu-xlC_r... no checking for riscv64-koji-linux-gnu-xlC... no checking for g++... no checking for c++... no checking for gpp... no checking for aCC... no checking for CC... no checking for cxx... no checking for cc++... no checking for cl.exe... no checking for FCC... no checking for KCC... no checking for RCC... no checking for xlC_r... no checking for xlC... no checking whether we are using the GNU C++ compiler... no checking whether g++ accepts -g... no checking dependency style of g++... none checking for riscv64-koji-linux-gnu-g77... no checking for riscv64-koji-linux-gnu-xlf... no checking for riscv64-koji-linux-gnu-f77... no checking for riscv64-koji-linux-gnu-frt... no checking for riscv64-koji-linux-gnu-pgf77... no checking for riscv64-koji-linux-gnu-cf77... no checking for riscv64-koji-linux-gnu-fort77... no checking for riscv64-koji-linux-gnu-fl32... no checking for riscv64-koji-linux-gnu-af77... no checking for riscv64-koji-linux-gnu-xlf90... no checking for riscv64-koji-linux-gnu-f90... no checking for riscv64-koji-linux-gnu-pgf90... no checking for riscv64-koji-linux-gnu-pghpf... no checking for riscv64-koji-linux-gnu-epcf90... no checking for riscv64-koji-linux-gnu-gfortran... no checking for riscv64-koji-linux-gnu-g95... no checking for riscv64-koji-linux-gnu-xlf95... no checking for riscv64-koji-linux-gnu-f95... no checking for riscv64-koji-linux-gnu-fort... no checking for riscv64-koji-linux-gnu-ifort... no checking for riscv64-koji-linux-gnu-ifc... no checking for riscv64-koji-linux-gnu-efc... no checking for riscv64-koji-linux-gnu-pgf95... no BUILDSTDERR: checking for riscv64-koji-linux-gnucat: 'ld.so.conf.d/*.conf': No such file or directory + sed -i 's+\(search_path_spec="\)+\1/lib64 /usr/lib64 +' libtool + make -j4 -lf95... no checking for riscv64-koji-linux-gnu-ftn... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for riscv64-koji-linux-gnu-ar... no checking for ar... ar checking for riscv64-koji-linux-gnu-ranlib... no checking for ranlib... ranlib checking for riscv64-koji-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool appending configuration tag "F77" to libtool host=riscv64-koji-linux-gnu Fixing libtool for -rpath problems. checking for gawk... (cached) gawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 7.63.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking whether byte ordering is bigendian... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking for inline... inline checking for mode_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for library containing cos... -lm checking for strdup... yes configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating staden-io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands make all-recursive make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' Making all in io_lib make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-mkdir: cannot create directory '.libs': File exists BUILDSTDERR: translate.c: In function 'read2exp': BUILDSTDERR: translate.c:292:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 292 | if (p = strrchr(EN, '/')) BUILDSTDERR: | ^ BUILDSTDERR: translate.c:302:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 302 | if (cp = strrchr(read->trace_name, '/')) BUILDSTDERR: | ^~ BUILDSTDERR: translate.c: In function 'exp2read': BUILDSTDERR: translate.c:650:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 650 | if (fp = open_trace_file(exp_get_entry(e, EFLT_LN), fn)) { BUILDSTDERR: | ^~ D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c mkdir .libs mkdir .libs gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c compression.c -fPIC -DPIC -o .libs/libstaden_read_la-compression.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c translate.c -fPIC -DPIC -o .libs/libstaden_read_la-translate.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhatztr.c: In function 'mfread_ztr': BUILDSTDERR: ztr.c:335:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 335 | while (chunk = ztr_read_chunk_hdr(fp)) { BUILDSTDERR: | ^~~~~ BUILDSTDERR: ztr_translate.c:335:14: warning: 'ztr_encode_confidence_1' defined but not used [-Wunused-function] BUILDSTDERR: 335 | static char *ztr_encode_confidence_1(ztr_t *z, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:182:14: warning: 'ztr_encode_samples_T' defined but not used [-Wunused-function] BUILDSTDERR: 182 | static char *ztr_encode_samples_T(ztr_t *z, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:175:14: warning: 'ztr_encode_samples_G' defined but not used [-Wunused-function] BUILDSTDERR: 175 | static char *ztr_encode_samples_G(ztr_t *z, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:168:14: warning: 'ztr_encode_samples_C' defined but not used [-Wunused-function] BUILDSTDERR: 168 | static char *ztr_encode_samples_C(ztr_t *z, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:161:14: warning: 'ztr_encode_samples_A' defined but not used [-Wunused-function] BUILDSTDERR: 161 | static char *ztr_encode_samples_A(ztr_t *z, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: deflate_interlaced.c: In function 'calc_bit_lengths': BUILDSTDERR: deflate_interlaced.c:516:9: warning: variable 'map' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 516 | int map[258]; BUILDSTDERR: | ^~~ BUILDSTDERR: deflate_interlaced.c: In function 'huffman_multi_decode': BUILDSTDERR: deflate_interlaced.c:1760:9: warning: variable 'nc' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 1760 | int nc; BUILDSTDERR: | ^~ BUILDSTDERR: deflate_interlaced.c:1759:23: warning: variable 'c' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 1759 | huffman_codes_t **c; BUILDSTDERR: | ^ /redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c deflate_interlaced.c -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fpoint.c -fPIC -DPIC -o .libs/libstaden_read_la-fpoint.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c BUILDSTDERR: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOABI.c -fPIseqIOABI.c: In function 'getABIString': BUILDSTDERR: seqIOABI.c:259:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 259 | if (off = getABIIndexEntryLW(fp, indexO, label, count, 4, &len)) { BUILDSTDERR: | ^~~ BUILDSTDERR: seqIOABI.c: In function 'mfread_abi': BUILDSTDERR: seqIOABI.c:657:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 657 | if (p = strchr(commstrp, '\n')) BUILDSTDERR: | ^ BUILDSTDERR: seqIOABI.c:662:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 662 | } while(commstrp = p); BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: ctfCompress.c: In function 'ctfCompress2': BUILDSTDERR: ctfCompress.c:270:80: warning: format '%d' expects argument of type 'int', but argument 7 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: 270 | printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n", BUILDSTDERR: | ~^ BUILDSTDERR: | | BUILDSTDERR: | int BUILDSTDERR: | %ld BUILDSTDERR: ctfCompress.c:270:92: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: 270 | printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n", BUILDSTDERR: | ~^ BUILDSTDERR: | | BUILDSTDERR: | int BUILDSTDERR: | %ld BUILDSTDERR: ctfCompress.c: In function 'ctfCompress3': BUILDSTDERR: ctfCompress.c:607:116: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: 607 | printf (" // compress3:\n// %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n", BUILDSTDERR: | ~^ BUILDSTDERR: | | BUILDSTDERR: | int BUILDSTDERR: | %ld BUILDSTDERR: ctfCompress.c:607:128: warning: format '%d' expects argument of type 'int', but argument 9 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: 607 | printf (" // compress3:\n// %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n", BUILDSTDERR: | ~^ BUILDSTDERR: | | BUILDSTDERR: | int BUILDSTDERR: | %ld BUILDSTDERR: expFileIO.c: In function 'exp_print_mline': BUILDSTDERR: expFileIO.c:198:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 198 | if (c = strchr(p, '\n')) BUILDSTDERR: | ^ BUILDSTDERR: expFileIO.c:207:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 207 | if (c = strchr(p, '\n')) { BUILDSTDERR: | ^ BUILDSTDERR: expFileIO.c: In function 'opos2str': BUILDSTDERR: expFileIO.c:393:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] BUILDSTDERR: 393 | if (dir == 0) BUILDSTDERR: | ^ C -DPIC -o .libs/libstaden_read_la-seqIOABI.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ctfCompress.lo `test -f 'ctfCompress.c' || echo './'`ctfCompress.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOALF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ctfCompress.c -fPIC -DPIC -o .libs/libstaden_read_la-ctfCompress.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOCTF.lo `test -f 'seqIOCTF.c' || echo './'`seqIOCTF.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo './'`expFileIO.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOCTF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOCTF.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-misc_scf.lo `test -f 'misc_scf.c' || echo './'`misc_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c expFileIO.c -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o BUILDSTDERR: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-securseqIOPlain.c: In function 'mfread_pln': BUILDSTDERR: seqIOPlain.c:150:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 150 | if (p = strchr(type, ' ')) BUILDSTDERR: | ^ BUILDSTDERR: In file included from misc_scf.c:33: BUILDSTDERR: misc_scf.c: In function 'is_scf': BUILDSTDERR: ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: misc_scf.c:151:19: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 151 | ok = (magic==SCF_MAGIC); BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: misc_scf.c:151:19: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 151 | ok = (magic==SCF_MAGIC); BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from ../io_lib/Read.h:44, BUILDSTDERR: from read_scf.c:46: BUILDSTDERR: read_scf.c: In function 'read_scf_header': BUILDSTDERR: ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 67 | if (h->magic_number != SCF_MAGIC) return -1; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 67 | if (h->magic_number != SCF_MAGIC) return -1; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from write_scf.c:60: BUILDSTDERR: write_scf.c: In function 'mfwrite_scf': BUILDSTDERR: ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 389 | scf->header.magic_number = SCF_MAGIC; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 389 | scf->header.magic_number = SCF_MAGIC; BUILDSTDERR: | ^~~~~~~~~ ity -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOPlain.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOPlain.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c misc_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c read_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c write_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sff.c -fPIC -DPIC -o .libs/libstaden_read_la-sff.o BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annsrf.c: In function 'get_hi_bits': BUILDSTDERR: srf.c:1106:59: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] BUILDSTDERR: 1106 | val = (block->data[block->byte]) & (1<<(8-block->bit))-1; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~^~ BUILDSTDERR: srf.c:1126:21: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] BUILDSTDERR: 1126 | & (1<<(nbits-bnum))-1; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~ BUILDSTDERR: srf.c: In function 'pack_trace_suffix': BUILDSTDERR: srf.c:1383:10: warning: variable 'width' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 1383 | int width = 0; BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf.c: In function 'partial_decode_ztr': BUILDSTDERR: srf.c:1604:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 1604 | while (chunk = ztr_read_chunk_hdr(mf)) { BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf.c: In function 'srf_find_trace': BUILDSTDERR: srf.c:2025:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 2025 | fread(dpos, 1, item_sz, srf->fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ obin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf.c -fPIC -DPIC -o .libs/libstaden_read_la-srf.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c array.c -fPIC -DPIC -o .libs/libstaden_read_la-array.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c compress.c -fPIC -DPIC -o .libs/libstaden_read_la-compress.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c error.c -fPIC -DPIC -o .libs/libstaden_read_la-error.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c files.c -fPIC -DPIC -o .libs/libstaden_read_la-files.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_open_trace_file.c: In function 'find_file_tar': BUILDSTDERR: open_trace_file.c:143:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 143 | if (cp = strchr(path, '\n')) BUILDSTDERR: | ^~ BUILDSTDERR: open_trace_file.c: In function 'sff_hash_query': BUILDSTDERR: open_trace_file.c:537:14: warning: assignment to 'FILE **' {aka 'struct _IO_FILE **'} from incompatible pointer type 'FILE *' {aka 'struct _IO_FILE *'} [-Wincompatible-pointer-types] BUILDSTDERR: 537 | hf->afp = hf->hfp = NULL; /* will be closed by our parent */ BUILDSTDERR: | ^ BUILDSTDERR: open_trace_file.c:530:18: warning: variable 'fp_copy' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 530 | static FILE *fp_copy = NULL; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: open_trace_file.c: In function 'find_file_sff': BUILDSTDERR: open_trace_file.c:748:14: warning: variable 'nkey' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 748 | uint32_t nkey, nflows, chdrlen, rhdrlen, dlen, magic; BUILDSTDERR: | ^~~~ BUILDSTDERR: open_trace_file.c: In function 'find_file_dir': BUILDSTDERR: open_trace_file.c:914:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 914 | if (cp = strrchr(file, '/')) { BUILDSTDERR: | ^~ BUILDSTDERR: open_trace_file.c: In function 'open_path_mfile': BUILDSTDERR: open_trace_file.c:1087:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 1087 | if (cp = strrchr(relative_path, '/')) BUILDSTDERR: | ^~ BUILDSTDERR: open_trace_file.c:1089:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 1089 | if (fp = find_file_dir(file, relative_path)) BUILDSTDERR: | ^~ BUILDSTDERR: open_trace_file.c: In function 'find_file_sff': BUILDSTDERR: open_trace_file.c:798:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 798 | fread(index_format, 1, 8, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: open_trace_file.c: In function 'find_file_dir': BUILDSTDERR: open_trace_file.c:929:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 929 | fread(magic, 1, 4, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: open_trace_file.c:940:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 940 | fread(magic, 1, 8, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: open_trace_file.c:950:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 950 | fread(magic, 1, 5, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~ FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c find.c -fPIC -DPIC -o .libs/libstaden_read_la-find.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mach-io.c -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c open_trace_file.c -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c read_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-read_alloc.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c strings.c -fPIC -DPIC -o .libs/libstaden_read_la-strings.o BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-aopen_trace_file.c: In function 'sff_sorted_query': BUILDSTDERR: open_trace_file.c:704:5: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 704 | fseek(fp, offset, SEEK_SET); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/string.h:494, BUILDSTDERR: from strings.c:22: BUILDSTDERR: In function 'strncpy', BUILDSTDERR: inlined from 'c2fstr' at strings.c:49:5: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from strings.c:19: BUILDSTDERR: strings.c: In function 'c2fstr': BUILDSTDERR: strings.c:48:18: note: length computed here BUILDSTDERR: 48 | i = min((int)strlen(c),max_f); BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: ../io_lib/misc.h:64:23: note: in definition of macro 'min' BUILDSTDERR: 64 | #define min(A,B) ( ( (A) < (B) ) ? (A) : (B) ) BUILDSTDERR: | ^ BUILDSTDERR: vlen.c: In function 'vflen': BUILDSTDERR: vlen.c:86:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 86 | for(; c=*++cp;) { BUILDSTDERR: | ^ BUILDSTDERR: vlen.c:57:9: warning: variable 'i' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 57 | int i; BUILDSTDERR: | ^ nnobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c traceType.c -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c xalloc.c -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c vlen.c -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-pooledjenkins_lookup3.c:654:17: warning: 'hashbig' defined but not used [-Wunused-function] BUILDSTDERR: 654 | static uint32_t hashbig( const void *key, size_t length, uint32_t initval) BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: jenkins_lookup3.c:288:17: warning: 'hashlittle' defined but not used [-Wunused-function] BUILDSTDERR: 288 | static uint32_t hashlittle( const void *key, size_t length, uint32_t initval) BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: jenkins_lookup3.c:223:13: warning: 'hashword2' defined but not used [-Wunused-function] BUILDSTDERR: 223 | static void hashword2 ( BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: jenkins_lookup3.c:179:17: warning: 'hashword' defined but not used [-Wunused-function] BUILDSTDERR: 179 | static uint32_t hashword( BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: hash_table.c: In function 'HashFileFopen': BUILDSTDERR: hash_table.c:1140:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1140 | fread(hf->archives[i], 1, fnamelen, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1156:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1156 | fread(&hf->headers[i].pos, 8, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1157:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1157 | fread(&hf->headers[i].size, 4, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1169:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1169 | fread(&hf->footers[i].pos, 8, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1170:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1170 | fread(&hf->footers[i].size, 4, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c: In function 'HashFileQuery': BUILDSTDERR: hash_table.c:1368:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1368 | fread(k, klen, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1369:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1369 | fread(&headfoot, 1, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1372:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1372 | fread(&pos, 8, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1376:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1376 | fread(&size, 4, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c: In function 'HashFileExtract': BUILDSTDERR: hash_table.c:1506:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1506 | fread(&data[pos], head->size, 1, hf->afp[head->archive_no]); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1516:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1516 | fread(&data[pos], hfi.size, 1, hf->afp[hfi.archive]); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1526:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1526 | fread(&data[pos], foot->size, 1, hf->afp[foot->archive_no]); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: mFILE.c: In function 'mfreopen': BUILDSTDERR: mFILE.c:194:16: warning: variable 'w' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 194 | int r = 0, w = 0, a = 0, b = 0, x = 0, mode = 0; BUILDSTDERR: | ^ BUILDSTDERR: pooled_alloc.c: In function 'new_pool': BUILDSTDERR: pooled_alloc.c:37:11: warning: unused variable 'cp' [-Wunused-variable] BUILDSTDERR: 37 | char *cp; BUILDSTDERR: | ^~ BUILDSTDERR: pooled_alloc.c:35:12: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: 35 | size_t i, n = PSIZE / p->dsize; BUILDSTDERR: | ^ BUILDSTDERR: pooled_alloc.c: In function 'pool_alloc': BUILDSTDERR: pooled_alloc.c:65:12: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: 65 | size_t i; BUILDSTDERR: | ^ BUILDSTDERR: pooled_alloc.c: In function 'pool_free': BUILDSTDERR: pooled_alloc.c:95:19: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: 95 | size_t psize, i; BUILDSTDERR: | ^ BUILDSTDERR: pooled_alloc.c:95:12: warning: unused variable 'psize' [-Wunused-variable] BUILDSTDERR: 95 | size_t psize, i; BUILDSTDERR: | ^~~~~ BUILDSTDERR: mFILE.c: In function 'mfflush': BUILDSTDERR: mFILE.c:487:10: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] BUILDSTDERR: 487 | if (!mf->mode & MF_MODEX) BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: mFILE.c:493:2: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 493 | ftruncate(fileno(mf->fp), ftell(mf->fp)); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c jenkins_lookup3.c -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_table.c -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mFILE.c -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pooled_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libstaden-read.la -rpath /usr/lib64 -version-info 2:2:1 libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-ctfCompress.lo libstaden_read_la-seqIOCTF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo -lz -lcurl -lm BUILDSTDERR: gcc -shared .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-ctfCompress.o .libs/libstaden_read_la-seqIOCTF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstadeextract_seq.c: In function 'main': BUILDSTDERR: extract_seq.c:199:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 199 | if (cp = strchr(line, '\n')) BUILDSTDERR: | ^~ BUILDSTDERR: extract_qual.c: In function 'main': BUILDSTDERR: extract_qual.c:317:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 317 | if (cp = strchr(line, '\n')) BUILDSTDERR: | ^~ BUILDSTDERR: convert_trace.c:16:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] BUILDSTDERR: 16 | static char const rcsid[] = "$Id: convert_trace.c,v 1.12 2008-02-20 16:07:44 jkbonfield Exp $"; BUILDSTDERR: | ^~~~~ BUILDSTDERR: extract_fastq.c: In function 'main': BUILDSTDERR: extract_fastq.c:141:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 141 | if (cp = strchr(line, '\n')) BUILDSTDERR: | ^~ BUILDSTDERR: index_tar.c: In function 'main': BUILDSTDERR: index_tar.c:72:21: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 72 | fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: index_tar.c:82:17: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 82 | fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ n_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o -lz -lcurl -lm -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -Wl,-soname -Wl,libstaden-read.so.1 -o .libs/libstaden-read.so.1.1.2 (cd .libs && rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1) (cd .libs && rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so) creating libstaden-read.la (cd .libs && rm -f libstaden-read.la && ln -s ../libstaden-read.la libstaden-read.la) make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' Making all in progs make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c convert_trace.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c makeSCF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extract_seq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extract_qual.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extract_fastq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c index_tar.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_dump.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_info.c BUILDSTDERR: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -greconvert_trace.c: In function 'main': BUILDSTDERR: convert_trace.c:743:23: warning: '%s' directive writing up to 8191 bytes into a region of size 2042 [-Wformat-overflow=] BUILDSTDERR: 724 | infname = line2; BUILDSTDERR: | ~~~~~ BUILDSTDERR: ...... BUILDSTDERR: 743 | sprintf(buf, "ERROR %s", infname); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from convert_trace.c:5: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 8198 bytes into a destination of size 2048 BUILDSTDERR: 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 37 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_tar.c: In function 'load_map': BUILDSTDERR: hash_tar.c:78:5: warning: implicit declaration of function 'close'; did you mean 'pclose'? [-Wimplicit-function-declaration] BUILDSTDERR: 78 | close(fp); BUILDSTDERR: | ^~~~~ BUILDSTDERR: | pclose BUILDSTDERR: hash_tar.c: In function 'main': BUILDSTDERR: hash_tar.c:273:11: warning: unused variable 'fp' [-Wunused-variable] BUILDSTDERR: 273 | FILE *fp; BUILDSTDERR: | ^~ BUILDSTDERR: hash_tar.c: In function 'accumulate': BUILDSTDERR: hash_tar.c:136:21: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 136 | fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_tar.c:146:17: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 146 | fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_tar.c:204:1: warning: control reaches end of non-void function [-Wreturn-type] BUILDSTDERR: 204 | } BUILDSTDERR: | ^ BUILDSTDERR: hash_extract.c: In function 'extract': BUILDSTDERR: hash_extract.c:20:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 20 | if (data = HashFileExtract(hf, file, &len)) { BUILDSTDERR: | ^~~~ BUILDSTDERR: hash_extract.c: In function 'main': BUILDSTDERR: hash_extract.c:74:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 74 | if (c = strchr(file, '\n')) BUILDSTDERR: | ^ BUILDSTDERR: hash_sff.c: In function 'main': BUILDSTDERR: hash_sff.c:207:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 207 | while (len = fread(block, 1, 8192, fp)) { BUILDSTDERR: | ^~~ BUILDSTDERR: hash_sff.c:230:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 230 | fread(hdr, 1, 31, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_sff.c:258:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 258 | fread(hdr, 1, 31, fpout); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_tar.c: In function 'main': BUILDSTDERR: hash_tar.c:327:13: warning: 'hf' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 327 | realloc(hf->headers, (hf->nheaders+1) * BUILDSTDERR: | ~~^~~~~~~~~ BUILDSTDERR: append_sff.c: In function 'main': BUILDSTDERR: append_sff.c:116:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 116 | fread(chdr, 1, 31, fpout); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~ cord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_update.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c get_comment.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_tar.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_extract.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_list.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c trace_dump.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_sff.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c append_sff.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr_dump.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_dump_all.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_index_hash.c BUILDSTDERR: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -csrf_dump_all.c: In function 'dump_solexa': BUILDSTDERR: srf_dump_all.c:309:50: warning: pointer targets in passing argument 3 of 'dump_conf4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: 309 | dump_conf4_solexa(files[1], seq, chunks[0]->data+1, chunks[0]->dlength-1); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: srf_dump_all.c:227:58: note: expected 'signed char *' but argument is of type 'char *' BUILDSTDERR: 227 | void dump_conf4_solexa(FILE *fp, char *seq, signed char *bytes, int nbytes) { BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~ BUILDSTDERR: srf_dump_all.c:320:25: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: 320 | chunks[i]->data+2, chunks[i]->dlength-2); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: srf_dump_all.c:195:35: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: 195 | int baseline, unsigned char *bytes, int nbytes) { BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: srf_dump_all.c:333:25: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: 333 | chunks[i]->data+2, chunks[i]->dlength-2); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: srf_dump_all.c:195:35: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: 195 | int baseline, unsigned char *bytes, int nbytes) { BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: srf_dump_all.c:346:25: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: 346 | chunks[i]->data+2, chunks[i]->dlength-2); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: srf_dump_all.c:195:35: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: 195 | int baseline, unsigned char *bytes, int nbytes) { BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: srf_dump_all.c: In function 'read_filter_from_file': BUILDSTDERR: srf_dump_all.c:484:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 484 | long lStartPos; /* Offset of start of current line */ BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: srf_dump_all.c:483:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 483 | long lLineLen; /* Current line length */ BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: srf_dump_all.c:506:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 506 | fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */ BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_index_hash.c: In function 'main': BUILDSTDERR: srf_index_hash.c:138:5: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 138 | ftruncate(fileno(srf->fp), ftello(srf->fp)); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf2fastq.c: In function 'ztr2fastq': BUILDSTDERR: srf2fastq.c:369:17: warning: variable 'start' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 369 | int start, length; BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf2fastq.c:480:21: warning: variable 'start' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 480 | int start, length; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from srf_dump_all.c:37: BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'read_filter_from_file' at srf_dump_all.c:566:7: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'read_filter_from_file' at srf_dump_all.c:555:7: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_dump_all.c:651:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_dump_all.c:640:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_dump_all.c:622:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_filter.c: In function 'read_filter_from_file': BUILDSTDERR: srf_filter.c:164:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 164 | long lStartPos; /* Offset of start of current line */ BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: srf_filter.c:163:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 163 | long lLineLen; /* Current line length */ BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: srf_info.c: In function 'partial_decode_ztr2': BUILDSTDERR: srf_info.c:411:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 411 | while (chunk = ztr_read_chunk_hdr(mf)) { BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf_filter.c: In function 'dump_read_filter': BUILDSTDERR: srf_filter.c:457:33: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: 457 | printf("\tread[%d] = %s\n", hi->data.i, hi->key); BUILDSTDERR: | ~^ ~~~~~~~~~~ BUILDSTDERR: | | | BUILDSTDERR: | int uint64_t {aka long unsigned int} BUILDSTDERR: | %ld BUILDSTDERR: srf_filter.c: In function 'add_readpair_region': BUILDSTDERR: srf_filter.c:587:16: warning: pointer targets in assignment from 'unsigned char *' to 'char *' differ in signedness [-Wpointer-sign] BUILDSTDERR: 587 | c.data = data; BUILDSTDERR: | ^ BUILDSTDERR: srf_filter.c: In function 'srf_filter': BUILDSTDERR: srf_filter.c:699:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 699 | while (chunk = ztr_read_chunk_hdr(in_srf->mf)) { BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf_filter.c:788:23: warning: left-hand operand of comma expression has no effect [-Wunused-value] BUILDSTDERR: 788 | stderr, "Error making trace header.\nExiting.\n"; BUILDSTDERR: | ^ BUILDSTDERR: srf_filter.c:788:23: warning: statement with no effect [-Wunused-value] BUILDSTDERR: srf_filter.c:794:66: warning: pointer targets in passing argument 3 of 'srf_construct_trace_hdr' differ in signedness [-Wpointer-sign] BUILDSTDERR: 794 | srf_construct_trace_hdr(&out_srf->th, in_srf->th.id_prefix, trace_hdr, trace_hdr_size); BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: In file included from srf_filter.c:47: BUILDSTDERR: ../io_lib/srf.h:144:18: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: 144 | srf_trace_hdr_t *srf_construct_trace_hdr(srf_trace_hdr_t *th, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_filter.c:894:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 894 | while (chunk = ztr_read_chunk_hdr(in_srf->mf)) { BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf_filter.c:980:78: warning: pointer targets in passing argument 4 of 'srf_construct_trace_body' differ in signedness [-Wpointer-sign] BUILDSTDERR: 980 | srf_construct_trace_body(&new_tb, name+strlen(in_srf->th.id_prefix), -1, mf->data, mf->size, old_tb.flags); BUILDSTDERR: | ~~^~~~~~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: In file included from srf_filter.c:47: BUILDSTDERR: ../io_lib/srf.h:152:19: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: 152 | srf_trace_body_t *srf_construct_trace_body(srf_trace_body_t *th, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_filter.c: In function 'read_filter_from_file': BUILDSTDERR: srf_filter.c:186:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 186 | fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */ BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf2fastq.c:248:13: warning: 'regn' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 248 | regn_t *regn; BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from srf_filter.c:37: BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'read_filter_from_file' at srf_filter.c:246:7: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'read_filter_from_file' at srf_filter.c:235:7: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_filter.c:348:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_filter.c:337:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_filter.c:319:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_filter.c: In function 'srf_filter': BUILDSTDERR: srf_filter.c:970:19: warning: 'output_trace_header' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 970 | if( output_trace_header ) { BUILDSTDERR: | ^ BUILDSTDERR: srf_list.c: In function 'count_file': BUILDSTDERR: srf_list.c:75:19: warning: unused variable 'data' [-Wunused-variable] BUILDSTDERR: 75 | unsigned char data[16]; BUILDSTDERR: | ^~~~ BUILDSTDERR: srf_list.c:74:22: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: 74 | int item_sz = 9, i; BUILDSTDERR: | ^ BUILDSTDERR: srf_list.c:73:11: warning: variable 'ipos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 73 | off_t ipos, skip; BUILDSTDERR: | ^~~~ BUILDSTDERR: srf_list.c:72:13: warning: unused variable 'count' [-Wunused-variable] BUILDSTDERR: 72 | int64_t count = 0; BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf_list.c: In function 'main': BUILDSTDERR: srf_list.c:158:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] BUILDSTDERR: 158 | printf("%s: %d sequences\n", argv[i], c); BUILDSTDERR: | ~^ ~ BUILDSTDERR: | | | BUILDSTDERR: | int int64_t {aka long int} BUILDSTDERR: | %ld srf_extract_linear.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_extract_hash.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf2fastq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf2fasta.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_filter.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_info.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_list.c /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm mkdir .libs gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm creating convert_trace gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm creating makeSCF creating extract_seq /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o index_tar index_tar.o -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_dump scf_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_fastq extract_fastq.o ../io_lib/.libs/libstaden-read.so -lm creating extract_qual /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_info scf_info.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o index_tar index_tar.o -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_update scf_update.o ../io_lib/libstaden-read.la -lm creating extract_fastq /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o get_comment get_comment.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_dump scf_dump.o ../io_lib/.libs/libstaden-read.so -lm creating scf_dump /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_tar hash_tar.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_info scf_info.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_update scf_update.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/get_comment get_comment.o ../io_lib/.libs/libstaden-read.so -lm creating scf_info /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_extract hash_extract.o ../io_lib/libstaden-read.la -lm creating scf_update creating get_comment /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_list hash_list.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o trace_dump trace_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_tar hash_tar.o ../io_lib/.libs/libstaden-read.so -lm creating hash_tar /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_sff hash_sff.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_extract hash_extract.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_list hash_list.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/trace_dump trace_dump.o ../io_lib/.libs/libstaden-read.so -lm creating hash_extract /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o append_sff append_sff.o ../io_lib/libstaden-read.la -lm creating hash_list /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ztr_dump ztr_dump.o ../io_lib/libstaden-read.la -lm creating trace_dump /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_dump_all srf_dump_all.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_sff hash_sff.o ../io_lib/.libs/libstaden-read.so -lm creating hash_sff /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_index_hash srf_index_hash.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/append_sff append_sff.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ztr_dump ztr_dump.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_dump_all srf_dump_all.o ../io_lib/.libs/libstaden-read.so -lm creating append_sff /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_extract_linear srf_extract_linear.o ../io_lib/libstaden-read.la -lm creating ztr_dump /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_extract_hash srf_extract_hash.o ../io_lib/libstaden-read.la -lm creating srf_dump_all /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf2fastq srf2fastq.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_index_hash srf_index_hash.o ../io_lib/.libs/libstaden-read.so -lm creating srf_index_hash /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf2fasta srf2fasta.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_extract_linear srf_extract_linear.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_extract_hash srf_extract_hash.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf2fastq srf2fastq.o ../io_lib/.libs/libstaden-read.so -lm creating srf_extract_linear BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwin+ RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 d-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_filter srf_filter.o ../io_lib/libstaden-read.la -lm creating srf_extract_hash creating srf2fastq /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf2fasta srf2fasta.o ../io_lib/.libs/libstaden-read.so -lm creating srf2fasta gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm creating srf_filter creating srf_list creating srf_info make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' Making all in tests make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.RQLxf0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64 + cd io_lib-1.12.4 + rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64 + make install DESTDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64 BUILDSTDERR: libtool: install: warning: remember to run `libtool --finish /usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' Making install in io_lib make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' test -z "/usr/lib64" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/lib64" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libstaden-read.la' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/lib64/libstaden-read.la' /usr/bin/install -c .libs/libstaden-read.so.1.1.2 /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/lib64/libstaden-read.so.1.1.2 (cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so.1 || { rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1; }; }) (cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so; }; }) /usr/bin/install -c .libs/libstaden-read.lai /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/lib64/libstaden-read.la make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' Making install in progs make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'convert_trace' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/convert_trace' /usr/bin/install -c .libs/convert_trace /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/convert_trace /bin/sh ../libtool --mode=install /usr/bin/install -c 'makeSCF' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/makeSCF' /usr/bin/install -c .libs/makeSCF /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/makeSCF /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_seq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_seq' /usr/bin/install -c .libs/extract_seq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_seq /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_qual' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_qual' /usr/bin/install -c .libs/extract_qual /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_qual /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_fastq' /usr/bin/install -c .libs/extract_fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_fastq /bin/sh ../libtool --mode=install /usr/bin/install -c 'index_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/index_tar' /usr/bin/install -c index_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/index_tar /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_dump' /usr/bin/install -c .libs/scf_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_info' /usr/bin/install -c .libs/scf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_info /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_update' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_update' /usr/bin/install -c .libs/scf_update /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_update BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /bin/sh ../libtool --mode=install /usr/bin/install -c 'get_comment' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/get_comment' /usr/bin/install -c .libs/get_comment /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/get_comment /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_tar' /usr/bin/install -c .libs/hash_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_tar /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_extract' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_extract' /usr/bin/install -c .libs/hash_extract /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_extract /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_list' /usr/bin/install -c .libs/hash_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_list /bin/sh ../libtool --mode=install /usr/bin/install -c 'trace_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/trace_dump' /usr/bin/install -c .libs/trace_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/trace_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_sff' /usr/bin/install -c .libs/hash_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_sff /bin/sh ../libtool --mode=install /usr/bin/install -c 'append_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/append_sff' /usr/bin/install -c .libs/append_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/append_sff /bin/sh ../libtool --mode=install /usr/bin/install -c 'ztr_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/ztr_dump' /usr/bin/install -c .libs/ztr_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/ztr_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_dump_all' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_dump_all' /usr/bin/install -c .libs/srf_dump_all /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_dump_all /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_index_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_index_hash' /usr/bin/install -c .libs/srf_index_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_index_hash /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_extract_linear' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_extract_linear' /usr/bin/install -c .libs/srf_extract_linear /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_extract_linear /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_extract_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_extract_hash' /usr/bin/install -c .libs/srf_extract_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_extract_hash /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf2fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf2fastq' /usr/bin/install -c .libs/srf2fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf2fastq /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf2fasta' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf2fasta' /usr/bin/install -c .libs/srf2fasta /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf2fasta /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_filter' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_filter' BUILDSTDERR: /usr/bin/install -c .libs/srf_filter /builddir/build/BUILDROOT/staden-io_lib-1.libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' 12.4-16.fc31.riscv64/usr/bin/srf_filter /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_info' /usr/bin/install -c .libs/srf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_info /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_list' /usr/bin/install -c .libs/srf_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_list make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' Making install in tests make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin" /usr/bin/install -c 'staden-io_lib-config' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/staden-io_lib-config' test -z "/usr/share/man/man1" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man1" /usr/bin/install -c -m 644 './man/man1/srf_index_hash.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man1/srf_index_hash.1' /usr/bin/install -c -m 644 './man/man1/srf_info.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man1/srf_info.1' /usr/bin/install -c -m 644 './man/man1/srf_list.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man1/srf_list.1' /usr/bin/install -c -m 644 './man/man1/srf2fasta.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man1/srf2fasta.1' /usr/bin/install -c -m 644 './man/man1/srf2fastq.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man1/srf2fastq.1' test -z "/usr/share/man/man3" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3" /usr/bin/install -c -m 644 './man/man3/read_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/read_scf_header.3' /usr/bin/install -c -m 644 './man/man3/read_allocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/read_allocate.3' /usr/bin/install -c -m 644 './man/man3/ExperimentFile.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/ExperimentFile.3' /usr/bin/install -c -m 644 './man/man3/write_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/write_reading.3' /usr/bin/install -c -m 644 './man/man3/write_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/write_scf.3' /usr/bin/install -c -m 644 './man/man3/read_deallocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/read_deallocate.3' /usr/bin/install -c -m 644 './man/man3/fwrite_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/fwrite_reading.3' /usr/bin/install -c -m 644 './man/man3/read2scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/read2scf.3' /usr/bin/install -c -m 644 './man/man3/scf2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/scf2read.3' /usr/bin/install -c -m 644 './man/man3/fwrite_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/fwrite_scf.3' /usr/bin/install -c -m 644 './man/man3/write_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/write_scf_header.3' /usr/bin/install -c -m 644 './man/man3/read_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/read_reading.3' /usr/bin/install -c -m 644 './man/man3/read_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/read_scf.3' /usr/bin/install -c -m 644 './man/man3/exp2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/exp2read.3' /usr/bin/install -c -m 644 './man/man3/fread_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/fread_reading.3' /usr/bin/install -c -m 644 './man/man3/read2exp.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/read2exp.3' /usr/bin/install -c -m 644 './man/man3/fread_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man3/fread_scf.3' test -z "/usr/share/man/man4" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man4" /usr/bin/install -c -m 644 './man/man4/Read.4' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/man/man4/Read.4' test -z "/usr/include/io_lib" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib" /usr/bin/install -c -m 644 'io_lib/Read.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/Read.h' /usr/bin/install -c -m 644 'io_lib/scf_extras.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/scf_extras.h' /usr/bin/install -c -m 644 'io_lib/translate.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/translate.h' /usr/bin/install -c -m 644 'io_lib/abi.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/abi.h' /usr/bin/install -c -m 644 'io_lib/fpoint.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/fpoint.h' /usr/bin/install -c -m 644 'io_lib/seqIOABI.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/seqIOABI.h' /usr/bin/install -c -m 644 'io_lib/alf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/alf.h' /usr/bin/install -c -m 644 'io_lib/seqIOCTF.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/seqIOCTF.h' /usr/bin/install -c -m 644 'io_lib/expFileIO.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/expFileIO.h' /usr/bin/install -c -m 644 'io_lib/plain.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/plain.h' /usr/bin/install -c -m 644 'io_lib/scf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/scf.h' /usr/bin/install -c -m 644 'io_lib/sff.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/sff.h' /usr/bin/install -c -m 644 'io_lib/array.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/array.h' /usr/bin/install -c -m 644 'io_lib/compress.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/compress.h' /usr/bin/install -c -m 644 'io_lib/error.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/error.h' /usr/bin/install -c -m 644 'io_lib/mach-io.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/mach-io.h' /usr/bin/install -c -m 644 'io_lib/misc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/misc.h' /usr/bin/install -c -m 644 'io_lib/open_trace_file.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/open_trace_file.h' BUILDSTDERR: /usr/bin/install -c -m 644 'io_lib/tar_format.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.r+ find /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64 -name '*.la' -exec rm -f '{}' ';' + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.12.4-16.fc31 --unique-debug-suffix -1.12.4-16.fc31.riscv64 --unique-debug-src-base staden-io_lib-1.12.4-16.fc31.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/io_lib-1.12.4 iscv64/usr/include/io_lib/tar_format.h' /usr/bin/install -c -m 644 'io_lib/traceType.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/traceType.h' /usr/bin/install -c -m 644 'io_lib/xalloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/xalloc.h' /usr/bin/install -c -m 644 'io_lib/mFILE.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/mFILE.h' /usr/bin/install -c -m 644 'io_lib/stdio_hack.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/stdio_hack.h' /usr/bin/install -c -m 644 'io_lib/vlen.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/vlen.h' /usr/bin/install -c -m 644 'io_lib/hash_table.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/hash_table.h' /usr/bin/install -c -m 644 'io_lib/jenkins_lookup3.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/jenkins_lookup3.h' /usr/bin/install -c -m 644 'io_lib/os.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/os.h' /usr/bin/install -c -m 644 'io_lib/compression.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/compression.h' /usr/bin/install -c -m 644 'io_lib/ztr.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/ztr.h' /usr/bin/install -c -m 644 'io_lib/deflate_interlaced.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/deflate_interlaced.h' /usr/bin/install -c -m 644 'io_lib/srf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/srf.h' /usr/bin/install -c -m 644 'io_lib/pooled_alloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/pooled_alloc.h' /usr/bin/install -c -m 644 'io_lib_config.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/include/io_lib/io_lib_config.h' make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/convert_trace explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_fastq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/append_sff explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_qual extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/append_sff extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_fastq extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/convert_trace extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_qual explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_seq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/get_comment extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/extract_seq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_extract extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/get_comment extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_extract explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_list extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_list explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_tar explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_sff extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_tar extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/hash_sff explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/index_tar extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/index_tar explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/makeSCF extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/makeSCF explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_info extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_update extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_info extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/scf_update explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf2fasta extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf2fasta explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf2fastq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_dump_all extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf2fastq extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_dump_all explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_extract_hash extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_extract_hash explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_extract_linear extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_extract_linear explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_filter extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_filter explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_index_hash extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_index_hash explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_info extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_info explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/srf_list BUILDSTDERR: extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/1828 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs usr/bin/srf_list explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/trace_dump extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/trace_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/ztr_dump extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/bin/ztr_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/lib64/libstaden-read.so.1.1.2 extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/lib64/libstaden-read.so.1.1.2 original debug info size: 1984kB, size after compression: 1876kB /usr/lib/rpm/sepdebugcrcfix: Updated 27 CRC32s, 0 CRC32s did match. mangling shebang in /usr/bin/staden-io_lib-config from /bin/sh to #!/usr/bin/sh Processing files: staden-io_lib-1.12.4-16.fc31.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.rk7B21 + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + DOCDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/doc/staden-io_lib + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/doc/staden-io_lib + cp -pr README /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/doc/staden-io_lib + cp -pr COPYRIGHT /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/doc/staden-io_lib + cp -pr CHANGES /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/doc/staden-io_lib + cp -pr docs/ /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64/usr/share/doc/staden-io_lib + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Provides: libstaden-read.so.1()(64bit) staden-io_lib = 1.12.4-16.fc31 staden-io_lib(riscv-64) = 1.12.4-16.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcurl.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstaden-read.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: staden-io_lib-devel-1.12.4-16.fc31.riscv64 Provides: staden-io_lib-devel = 1.12.4-16.fc31 staden-io_lib-devel(riscv-64) = 1.12.4-16.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libstaden-read.so.1()(64bit) Processing files: staden-io_lib-debugsource-1.12.4-16.fc31.riscv64 Provides: staden-io_lib-debugsource = 1.12.4-16.fc31 staden-io_lib-debugsource(riscv-64) = 1.12.4-16.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: staden-io_lib-debuginfo-1.12.4-16.fc31.riscv64 Provides: debuginfo(build-id) = 0235c11fb4aea21bc018d47061f4868cd1e96011 debuginfo(build-id) = 05e672fddc9e8884923970ed5b200064c0ac65d3 debuginfo(build-id) = 15241fb82ecc43819bc1f9989f3aba58db3a6947 debuginfo(build-id) = 217c695855bef0ce79bd2549c9a26843f08f366b debuginfo(build-id) = 2343f72886fd1f9125dc1859a0db9551cfd5bb79 debuginfo(build-id) = 2c80fc5af1e6f358d49de4e6f41977c44f44b690 debuginfo(build-id) = 348adfc5364363f04fa42e07d7d7c470e54c8d2e debuginfo(build-id) = 38e88682447d859e9dfcd8062fe6d8a34d5a0d7d debuginfo(build-id) = 3f021f0a7e9bcc755bfc8ac4d3bfb5b12a2192c0 debuginfo(build-id) = 43d8f7d39dae6a24b8e4d64e182d67f4f484e1cc debuginfo(build-id) = 476b6e9ce80bd6b1ea61867d7d86adf239703300 debuginfo(build-id) = 47a767eb2a362a1e49301486758e922790cca75f debuginfo(build-id) = 5a09978246d453211034b488403a8f7d4ae946c3 debuginfo(build-id) = 5c637ee5327fece573df272998d9ec129ad3841a debuginfo(build-id) = 5f322a9370a40d058eddfd4764b9f11483358f53 debuginfo(build-id) = 729aa1e30f7bf334901ac387eb5f9eadbda51664 debuginfo(build-id) = 873c60d4b04342ddf151acb00f66c5724389d295 debuginfo(build-id) = a77f931308fbe8319c05e522e95ae57463d6d57b debuginfo(build-id) = b147f6c5d81c96fdfc57e1dca0e7449a3530c161 debuginfo(build-id) = b24384749e4f88ada0934b6f821932e2408ebe34 debuginfo(build-id) = cb9ade1c927193da77477624f7cceec8c17be2be debuginfo(build-id) = cf7893e4f944123204c996ea286badf4cf8cd720 debuginfo(build-id) = d623c3eaefec7a7c861a11aedefee68585890ad0 debuginfo(build-id) = da60b2ca5b065e786dbeae066e15f648fab206d1 debuginfo(build-id) = e0191ea2c026a45bf4473a2ddc0d6b93800c09d5 debuginfo(build-id) = e368e60d53c6db271ec9101010a352768aa8e366 debuginfo(build-id) = fd7b91e1682cbf19f4a89d5dab7a9287eb317ca2 staden-io_lib-debuginfo = 1.12.4-16.fc31 staden-io_lib-debuginfo(riscv-64) = 1.12.4-16.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: staden-io_lib-debugsource(riscv-64) = 1.12.4-16.fc31 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64 Wrote: /builddir/build/RPMS/staden-io_lib-devel-1.12.4-16.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/staden-io_lib-1.12.4-16.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/staden-io_lib-debugsource-1.12.4-16.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/staden-io_lib-debuginfo-1.12.4-16.fc31.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.3lB530 + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-16.fc31.riscv64 + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Child return code was: 0