Mock Version: 1.4.21
Mock Version: 1.4.21
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/libsedml.spec'], chrootPath='/var/lib/mock/f33-build-506182-64439/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3fe730d700>timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/libsedml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
sh: perl: command not found
sh: python3-config: command not found
sh: python3-config: command not found
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1596499200
Wrote: /builddir/build/SRPMS/libsedml-0.4.4-12.fc33.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/libsedml.spec'], chrootPath='/var/lib/mock/f33-build-506182-64439/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3fe730d700>timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/libsedml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1596499200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ube1sS
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf libSEDML-0.4.4
+ /usr/bin/gzip -dc /builddir/build/SOURCES/libSEDML-0.4.4.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd libSEDML-0.4.4
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/cat /builddir/build/SOURCES/libsedml-fix_install_libpaths.patch
+ /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch
+ /usr/bin/cat /builddir/build/SOURCES/libsedml-fix_string_format.patch
+ /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch
+ sed -e 's| lib/cmake | lib64/cmake |g' -i CMakeLists.txt
+ sed -e 's| /usr/lib/cmake | /usr/lib64/cmake |g' -i CMakeModules/FindLIBNUML.cmake
+ sed -e 's| /usr/lib/cmake | /usr/lib64/cmake |g' -i CMakeModules/FindLIBSBML.cmake
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.5diYSS
+ umask 022
+ cd /builddir/build/BUILD
+ cd libSEDML-0.4.4
+ mkdir build
+ pushd build
~/build/BUILD/libSEDML-0.4.4/build ~/build/BUILD/libSEDML-0.4.4
+ export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lpthread'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lpthread'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lpthread'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
++ pkg-config --cflags libxml-2.0
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DWITH_PYTHON:BOOL=ON -DWITH_SWIG:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.9 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.9.so -DWITH_PERL:BOOL=ON -DWITH_RUBY:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_CHECK:BOOL=ON -DWITH_EXAMPLES:BOOL=ON -DLIBSBML_LIBRARY:FILEPATH=/usr/lib64/libsbml.so -DLIBSBML_INCLUDE_DIR:PATH=/usr/include -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DLIBSEDML_SHARED_VERSION:BOOL=ON '-DEXTRA_LIBS:STRING=numl;sbml;xml2;bz2;z;m;dl' -DLIBSBML_STATIC:BOOL=OFF '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-I/usr/include/libxml2 ' -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DWITH_ZLIB:BOOL=ON -DWITH_CPP_NAMESPACE:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES ..
-- The C compiler identification is GNU 10.2.1
-- The CXX compiler identification is GNU 10.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for sbml-static
-- Found LIBSBML: sbml-static
-- Looking for numl-static
-- Found LIBNUML: numl-static
-- Looking for gzopen in /usr/lib64/libz.so
-- Looking for gzopen in /usr/lib64/libz.so - found
-- Looking for include file check.h
-- Looking for include file check.h - found
-- Looking for include file expat.h
-- Looking for include file expat.h - not found
-- Looking for include file errno.h
-- Looking for include file errno.h - found
-- Looking for include file math.h
-- Looking for include file math.h - found
-- Looking for include file sys/types.h
-- Looking for include file sys/types.h - found
-- Looking for include file float.h
-- Looking for include file float.h - found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Searching 16 bit integer - Using unsigned short
-- Check if the system is big endian - little endian
-- Found SWIG: /usr/bin/swig (found version "4.0.0")
-- Found PythonInterp: /usr/bin/python3 (found version "3.9.1")
-- Found PythonLibs: /usr/lib64/libpython3.9.so (found version "3.9.1")
-- Found Perl: /usr/bin/perl (found version "5.32.0")
-- Found PerlLibs: /usr/lib64/libperl.so (found version "5.32.0")
-- Found Ruby: /usr/bin/ruby (found suitable version "2.7.2", minimum required is "1.8.0")
--
----------------------------------------------------------------------
libSEDML version 0.4.4
----------------------------------------------------------------------
More information and the latest version are available online at
https://github.com/fbergmann/libSEDML/
Please report problems using the issue tracker at
https://github.com/fbergmann/libSEDML/issues
To contact the developers directly, email fbergman@caltech.edu
Configured on host 'unknown'
host type = Linux
host operating system = Linux 5.5.0-0.rc5.git0.1.1.riscv64.fc32.riscv64
host CPU architecture = riscv64
General build flags:
CC = /usr/bin/gcc
CXX = /usr/bin/g++
CPPFLAGS = -DLINUX -DPACKAGE_VERSION="0.4.4" -DPACKAGE_NAME="libsedml"
CFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC
CXXFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC
LDFLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lpthread
SBML library configuration:
SBML library = /usr/lib64/libsbml.so
SBML include = -I/usr/include
NUML library configuration:
NUML library = /lib64/libnuml.so
NUML include = -I/usr/include
Other libSEDML configuration settings:
Installation $prefix = /usr
-- Value of $LD_LIBRARY_PATH =
-- Using SWIG = /usr/bin/swig
-- Using Python = /usr/bin/python3
-- Using Perl = /usr/bin/perl
-- Using Ruby =
-- Using libcheck = /usr/lib64/libcheck.so
--
-- Using C++ namespace for libSEDML (libsedml) = no
--
----------------------------------------------------------------------
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_Fortran_FLAGS_RELEASE
CMAKE_SKIP_INSTALL_RPATH
CSHARP_COMPILER
INCLUDE_INSTALL_DIR
LIBSBML_STATIC
LIB_INSTALL_DIR
LIB_SUFFIX
SHARE_INSTALL_PREFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/libSEDML-0.4.4/build
+ /usr/bin/make -O -j4 V=1 VERBOSE=1
/usr/bin/cmake -S/builddir/build/BUILD/libSEDML-0.4.4 -B/builddir/build/BUILD/libSEDML-0.4.4/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSEDML-0.4.4/build/CMakeFiles /builddir/build/BUILD/libSEDML-0.4.4/build//CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
/usr/bin/make -f sedml/CMakeFiles/sedml-static.dir/build.make sedml/CMakeFiles/sedml-static.dir/depend
/usr/bin/make -f sedml/CMakeFiles/sedml.dir/build.make sedml/CMakeFiles/sedml.dir/depend
/usr/bin/make -f bindings/python/CMakeFiles/binding_python_swig.dir/build.make bindings/python/CMakeFiles/binding_python_swig.dir/depend
/usr/bin/make -f bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make bindings/perl/CMakeFiles/binding_perl_swig.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
cd /builddir/build/BUILD/libSEDML-0.4.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.4 /builddir/build/BUILD/libSEDML-0.4.4/bindings/perl /builddir/build/BUILD/libSEDML-0.4.4/build /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake --color=
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend.internal".
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend.internal".
Scanning dependencies of target binding_perl_swig
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/usr/bin/make -f bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make bindings/perl/CMakeFiles/binding_perl_swig.dir/build
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
cd /builddir/build/BUILD/libSEDML-0.4.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.4 /builddir/build/BUILD/libSEDML-0.4.4/bindings/python /builddir/build/BUILD/libSEDML-0.4.4/build /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color=
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python/CMakeFiles/binding_python_swig.dir/depend.internal".
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python/CMakeFiles/binding_python_swig.dir/depend.internal".
Scanning dependencies of target binding_python_swig
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/usr/bin/make -f bindings/python/CMakeFiles/binding_python_swig.dir/build.make bindings/python/CMakeFiles/binding_python_swig.dir/build
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
cd /builddir/build/BUILD/libSEDML-0.4.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.4 /builddir/build/BUILD/libSEDML-0.4.4/sedml /builddir/build/BUILD/libSEDML-0.4.4/build /builddir/build/BUILD/libSEDML-0.4.4/build/sedml /builddir/build/BUILD/libSEDML-0.4.4/build/sedml/CMakeFiles/sedml-static.dir/DependInfo.cmake --color=
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/CMakeFiles/sedml-static.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/CMakeFiles/sedml-static.dir/depend.internal".
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/CMakeFiles/sedml-static.dir/depend.internal".
Scanning dependencies of target sedml-static
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
cd /builddir/build/BUILD/libSEDML-0.4.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.4 /builddir/build/BUILD/libSEDML-0.4.4/sedml /builddir/build/BUILD/libSEDML-0.4.4/build /builddir/build/BUILD/libSEDML-0.4.4/build/sedml /builddir/build/BUILD/libSEDML-0.4.4/build/sedml/CMakeFiles/sedml.dir/DependInfo.cmake --color=
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/CMakeFiles/sedml.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/CMakeFiles/sedml.dir/depend.internal".
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/CMakeFiles/sedml.dir/depend.internal".
Scanning dependencies of target sedml
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/usr/bin/make -f sedml/CMakeFiles/sedml.dir/build.make sedml/CMakeFiles/sedml.dir/build
/usr/bin/make -f sedml/CMakeFiles/sedml-static.dir/build.make sedml/CMakeFiles/sedml-static.dir/build
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 4%] Building CXX object sedml/CMakeFiles/sedml-static.dir/common/libsedml-version.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/common/libsedml-version.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/common/libsedml-version.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 3%] Building CXX object sedml/CMakeFiles/sedml.dir/common/libsedml-version.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/common/libsedml-version.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/common/libsedml-version.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 6%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedAddXML.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedAddXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedAddXML.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedAddXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedAddXML.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedAlgorithm.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedAlgorithm.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedAlgorithm.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedAlgorithm.cpp
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[ 1%] Swig Perl bindings source
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/../../ -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl -I/usr/include/ -I/usr/include/ -c++ -perl5 -proxy -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/LibSEDML_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/libsedml.i
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/usr/include/sbml/xml/XMLInputStream.h:236: Warning 314: 'next' is a perl keyword
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/usr/include/sbml/SBase.h:859: Warning 509: as it is shadowed by SBase::getAncestorOfType(int,std::string const) const.
make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
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[ 7%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedAlgorithmParameter.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedAlgorithmParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedAlgorithmParameter.cpp
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 8%] Building CXX object sedml/CMakeFiles/sedml.dir/SedAlgorithmParameter.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedAlgorithmParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedAlgorithmParameter.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedBase.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedBase.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedBase.cpp: In member function 'bool SedBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)':
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedBase.cpp:1985:8: warning: variable 'sedmlDeclared' set but not used [-Wunused-but-set-variable]
1985 | bool sedmlDeclared = false;
| ^~~~~~~~~~~~~
/usr/bin/make -f bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend
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cd /builddir/build/BUILD/libSEDML-0.4.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.4 /builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby /builddir/build/BUILD/libSEDML-0.4.4/build /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake --color=
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend.internal".
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend.internal".
Scanning dependencies of target binding_ruby_swig
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[ 10%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedChange.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedChange.cpp
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 11%] Building CXX object sedml/CMakeFiles/sedml.dir/SedBase.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedBase.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedBase.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedBase.cpp: In member function 'bool SedBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)':
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedBase.cpp:1985:8: warning: variable 'sedmlDeclared' set but not used [-Wunused-but-set-variable]
1985 | bool sedmlDeclared = false;
| ^~~~~~~~~~~~~
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[ 13%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedChangeAttribute.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedChangeAttribute.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedChangeAttribute.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 2%] Swig Python source
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/python/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/python/../../ -I/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python/../../ -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/python/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/python -I/usr/include/ -I/usr/include/ -c++ -python -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.4/bindings/python/libsedml.i
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python" -DVERSION="0.4.4" -P /builddir/build/BUILD/libSEDML-0.4.4/bindings/python/add_version.cmake
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/builddir/build/BUILD/libSEDML-0.4.4/bindings/python/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored.
/builddir/build/BUILD/libSEDML-0.4.4/bindings/python/local.i:156: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name.
/builddir/build/BUILD/libSEDML-0.4.4/bindings/python/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored.
/builddir/build/BUILD/libSEDML-0.4.4/bindings/python/local.i:156: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name.
Python: Add Version to generated file
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[ 14%] Built target binding_python_swig
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedChange.cpp
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[ 14%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedChangeXML.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedChangeXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedChangeXML.cpp
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 16%] Building CXX object sedml/CMakeFiles/sedml.dir/SedChangeAttribute.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedChangeAttribute.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedChangeAttribute.cpp
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/usr/bin/make -f bindings/r/CMakeFiles/binding_r_swig.dir/build.make bindings/r/CMakeFiles/binding_r_swig.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
cd /builddir/build/BUILD/libSEDML-0.4.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.4 /builddir/build/BUILD/libSEDML-0.4.4/bindings/r /builddir/build/BUILD/libSEDML-0.4.4/build /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake --color=
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/CMakeFiles/binding_r_swig.dir/depend.internal".
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/CMakeFiles/binding_r_swig.dir/depend.internal".
Scanning dependencies of target binding_r_swig
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedComputeChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedComputeChange.cpp
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[ 16%] Building CXX object sedml/CMakeFiles/sedml.dir/SedChangeXML.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedChangeXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedChangeXML.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedConstructorException.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedConstructorException.cpp
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[ 12%] Swig Ruby source
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby/../../ -I/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/../../ -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby -I/usr/include/ -I/usr/include/ -c++ -ruby -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby/libsedml.i
/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored.
/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby/local.i:129: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name.
/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored.
/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby/local.i:129: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name.
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
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[ 20%] Built target binding_ruby_swig
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[ 19%] Building CXX object sedml/CMakeFiles/sedml.dir/SedComputeChange.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedComputeChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedComputeChange.cpp
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[ 21%] Building CXX object sedml/CMakeFiles/sedml.dir/SedConstructorException.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedConstructorException.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedConstructorException.cpp
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[ 20%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedCurve.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedCurve.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedCurve.cpp
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[ 22%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataDescription.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataDescription.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDataDescription.cpp
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[ 23%] Building CXX object sedml/CMakeFiles/sedml.dir/SedCurve.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedCurve.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedCurve.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 24%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataDescription.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataDescription.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDataDescription.cpp
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[ 24%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataGenerator.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataGenerator.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDataGenerator.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 17%] Swig R source
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/r/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/r/../../ -I/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/../../ -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/r/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/r -I/usr/include/ -I/usr/include/ -c++ -r -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.4/bindings/r/libsedml.i
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/usr/include/sbml/xml/XMLInputStream.h:236: Warning 314: 'next' is a R keyword, renaming to '_next'
/builddir/build/BUILD/libSEDML-0.4.4/bindings/r/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored.
/builddir/build/BUILD/libSEDML-0.4.4/bindings/r/local.i:156: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name.
/builddir/build/BUILD/libSEDML-0.4.4/bindings/r/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored.
/builddir/build/BUILD/libSEDML-0.4.4/bindings/r/local.i:156: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name.
/builddir/build/BUILD/libSEDML-0.4.4/bindings/r/../../sedml/SedConstructorException.h:67: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored.
/usr/include/sbml/xml/XMLConstructorException.h:72: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored.
/usr/include/numl/NMBase.h:60: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored.
make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 26%] Built target binding_r_swig
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[ 24%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataGenerator.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataGenerator.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDataGenerator.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 25%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataSet.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataSet.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDataSet.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 26%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataSet.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataSet.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDataSet.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 27%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataSource.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataSource.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDataSource.cpp
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[ 30%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedError.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedError.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedError.cpp
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 28%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataSource.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataSource.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDataSource.cpp
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[ 31%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedErrorLog.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedErrorLog.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedErrorLog.cpp
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[ 29%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDocument.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDocument.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDocument.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDocument.cpp: In member function 'virtual void SedDocument::readAttributes(const XMLAttributes&, const ExpectedAttributes&)':
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDocument.cpp:1330:8: warning: unused variable 'assigned' [-Wunused-variable]
1330 | bool assigned = false;
| ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 31%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDocument.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDocument.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDocument.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDocument.cpp: In member function 'virtual void SedDocument::readAttributes(const XMLAttributes&, const ExpectedAttributes&)':
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedDocument.cpp:1330:8: warning: unused variable 'assigned' [-Wunused-variable]
1330 | bool assigned = false;
| ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 34%] Building CXX object sedml/CMakeFiles/sedml.dir/SedError.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedError.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedError.cpp
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[ 33%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedListOf.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedListOf.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedListOf.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedFunctionalRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedFunctionalRange.cpp
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[ 35%] Building CXX object sedml/CMakeFiles/sedml.dir/SedErrorLog.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedErrorLog.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedErrorLog.cpp
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[ 35%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedModel.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedModel.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedModel.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedListOf.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedListOf.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedFunctionalRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedFunctionalRange.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedNamespaces.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedNamespaces.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedNamespaces.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedNamespaces.cpp
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[ 38%] Building CXX object sedml/CMakeFiles/sedml.dir/SedModel.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedModel.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedModel.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedOneStep.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedOneStep.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedOneStep.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedOneStep.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedOutput.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedOutput.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedOutput.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedOutput.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedPlot2D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedPlot2D.cpp
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/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedPlot2D.cpp: In member function 'virtual void SedPlot2D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)':
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedPlot2D.cpp:514:8: warning: unused variable 'assigned' [-Wunused-variable]
514 | bool assigned = false;
| ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedParameter.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedParameter.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedPlot3D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedPlot3D.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedPlot3D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedPlot3D.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedPlot2D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedPlot2D.cpp
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/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedPlot2D.cpp: In member function 'virtual void SedPlot2D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)':
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedPlot2D.cpp:514:8: warning: unused variable 'assigned' [-Wunused-variable]
514 | bool assigned = false;
| ^~~~~~~~
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedRange.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedReader.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedReader.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedReader.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedReader.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedRange.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedRemoveXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedRemoveXML.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedRemoveXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedRemoveXML.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedRepeatedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedRepeatedTask.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 56%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSimulation.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSimulation.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSimulation.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 54%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSetValue.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSetValue.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSetValue.cpp
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 57%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSlice.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSlice.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSlice.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSlice.cpp: In member function 'virtual SedBase* SedSlice::createObject(XMLInputStream&)':
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSlice.cpp:262:17: warning: unused variable 'name' [-Wunused-variable]
262 | const string& name = stream.peek().getName();
| ^~~~
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 57%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedReport.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedReport.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedReport.cpp
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[ 58%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSteadyState.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSteadyState.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSteadyState.cpp
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 59%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSimulation.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSimulation.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSimulation.cpp
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[ 58%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSetValue.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSetValue.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSetValue.cpp
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[ 60%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSubTask.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSubTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSubTask.cpp
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[ 61%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSurface.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSurface.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSurface.cpp
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 63%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSlice.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSlice.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSlice.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSlice.cpp: In member function 'virtual SedBase* SedSlice::createObject(XMLInputStream&)':
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSlice.cpp:262:17: warning: unused variable 'name' [-Wunused-variable]
262 | const string& name = stream.peek().getName();
| ^~~~
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 62%] Building CXX object sedml/CMakeFiles/sedml.dir/SedTask.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedTask.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedTask.cpp: In member function 'virtual SedBase* SedTask::createObject(XMLInputStream&)':
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedTask.cpp:376:17: warning: unused variable 'name' [-Wunused-variable]
376 | const string& name = stream.peek().getName();
| ^~~~
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 65%] Building CXX object sedml/CMakeFiles/sedml.dir/SedTypeCodes.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedTypeCodes.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedTypeCodes.cpp
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 63%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSteadyState.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSteadyState.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSteadyState.cpp
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[ 64%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSubTask.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSubTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSubTask.cpp
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[ 67%] Building CXX object sedml/CMakeFiles/sedml.dir/SedUniformTimeCourse.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedUniformTimeCourse.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedUniformTimeCourse.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedUniformRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedUniformRange.cpp
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSurface.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedSurface.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedTypeCodes.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedTypeCodes.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedTask.cpp
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/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedTask.cpp: In member function 'virtual SedBase* SedTask::createObject(XMLInputStream&)':
/builddir/build/BUILD/libSEDML-0.4.4/sedml/SedTask.cpp:376:17: warning: unused variable 'name' [-Wunused-variable]
376 | const string& name = stream.peek().getName();
| ^~~~
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedVisitor.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedVisitor.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedVariable.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedVariable.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedUniformRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedUniformRange.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedWriter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedWriter.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedUniformTimeCourse.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedUniformTimeCourse.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedVectorRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedVectorRange.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedVariable.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedVariable.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedVisitor.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedVisitor.cpp
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cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/g++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.4/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.4/sedml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedWriter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/sedml/SedWriter.cpp
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Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend.internal".
Scanning dependencies of target binding_ruby_lib
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 76%] Linking CXX shared library libsedml.so
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/cmake -E cmake_link_script CMakeFiles/sedml.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lpthread -shared -Wl,-soname,libsedml.so.0 -o libsedml.so.0.4.4 CMakeFiles/sedml.dir/common/libsedml-version.cpp.o CMakeFiles/sedml.dir/SedAddXML.cpp.o CMakeFiles/sedml.dir/SedAlgorithm.cpp.o CMakeFiles/sedml.dir/SedAlgorithmParameter.cpp.o CMakeFiles/sedml.dir/SedBase.cpp.o CMakeFiles/sedml.dir/SedChange.cpp.o CMakeFiles/sedml.dir/SedChangeAttribute.cpp.o CMakeFiles/sedml.dir/SedChangeXML.cpp.o CMakeFiles/sedml.dir/SedComputeChange.cpp.o CMakeFiles/sedml.dir/SedConstructorException.cpp.o CMakeFiles/sedml.dir/SedCurve.cpp.o CMakeFiles/sedml.dir/SedDataDescription.cpp.o CMakeFiles/sedml.dir/SedDataGenerator.cpp.o CMakeFiles/sedml.dir/SedDataSet.cpp.o CMakeFiles/sedml.dir/SedDataSource.cpp.o CMakeFiles/sedml.dir/SedDocument.cpp.o CMakeFiles/sedml.dir/SedError.cpp.o CMakeFiles/sedml.dir/SedErrorLog.cpp.o CMakeFiles/sedml.dir/SedFunctionalRange.cpp.o CMakeFiles/sedml.dir/SedListOf.cpp.o CMakeFiles/sedml.dir/SedModel.cpp.o CMakeFiles/sedml.dir/SedNamespaces.cpp.o CMakeFiles/sedml.dir/SedOneStep.cpp.o CMakeFiles/sedml.dir/SedOutput.cpp.o CMakeFiles/sedml.dir/SedParameter.cpp.o CMakeFiles/sedml.dir/SedPlot2D.cpp.o CMakeFiles/sedml.dir/SedPlot3D.cpp.o CMakeFiles/sedml.dir/SedRange.cpp.o CMakeFiles/sedml.dir/SedReader.cpp.o CMakeFiles/sedml.dir/SedRemoveXML.cpp.o CMakeFiles/sedml.dir/SedRepeatedTask.cpp.o CMakeFiles/sedml.dir/SedReport.cpp.o CMakeFiles/sedml.dir/SedSetValue.cpp.o CMakeFiles/sedml.dir/SedSimulation.cpp.o CMakeFiles/sedml.dir/SedSlice.cpp.o CMakeFiles/sedml.dir/SedSteadyState.cpp.o CMakeFiles/sedml.dir/SedSubTask.cpp.o CMakeFiles/sedml.dir/SedSurface.cpp.o CMakeFiles/sedml.dir/SedTask.cpp.o CMakeFiles/sedml.dir/SedTypeCodes.cpp.o CMakeFiles/sedml.dir/SedUniformRange.cpp.o CMakeFiles/sedml.dir/SedUniformTimeCourse.cpp.o CMakeFiles/sedml.dir/SedVariable.cpp.o CMakeFiles/sedml.dir/SedVectorRange.cpp.o CMakeFiles/sedml.dir/SedVisitor.cpp.o CMakeFiles/sedml.dir/SedWriter.cpp.o /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl
cd /builddir/build/BUILD/libSEDML-0.4.4/build/sedml && /usr/bin/cmake -E cmake_symlink_library libsedml.so.0.4.4 libsedml.so.0 libsedml.so
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
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[ 80%] Built target sedml
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
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Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/CMakeFiles/binding_r_lib.dir/depend.internal".
Dependee "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/CMakeFiles/binding_r_lib.dir/depend.internal".
Scanning dependencies of target binding_r_lib
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
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make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 79%] Swig Perl bindings source
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/../../ -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl -I/usr/include/ -I/usr/include/ -c++ -perl5 -proxy -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/LibSEDML_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/libsedml.i
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/usr/include/sbml/xml/XMLInputStream.h:236: Warning 314: 'next' is a perl keyword
/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/../../sedml/SedConstructorException.h:67: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored.
/usr/include/sbml/xml/XMLConstructorException.h:72: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored.
/usr/include/numl/NMBase.h:60: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored.
/usr/include/sbml/SBase.h:811: Warning 509: Overloaded method SBase::getAncestorOfType(int,std::string const &) effectively ignored,
/usr/include/sbml/SBase.h:859: Warning 509: as it is shadowed by SBase::getAncestorOfType(int,std::string const) const.
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 80%] Building CXX object bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsedml_wrap.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby && /usr/bin/g++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dbinding_ruby_lib_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/../.. -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby/../.. -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/ruby/../swig -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_ruby_lib.dir/libsedml_wrap.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'void SWIG_RubyInitializeTrackings()':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:1268:85: error: call of overloaded 'rb_define_virtual_variable(const char [21], VALUE (&)(...), NULL)' is ambiguous
1268 | rb_define_virtual_variable("SWIG_TRACKINGS_COUNT", swig_ruby_trackings_count, NULL);
| ^
In file included from /usr/include/ruby/ruby.h:2863,
from /usr/include/ruby.h:33,
from /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:881:
/usr/include/ruby/backward/cxxanyargs.hpp:59:1: note: candidate: 'void ruby::backward::cxxanyargs::rb_define_virtual_variable(const char*, VALUE (*)(...), void (*)(...))'
59 | rb_define_virtual_variable(const char *q, type *w, void_type *e)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/ruby/backward/cxxanyargs.hpp:90:1: note: candidate: 'void ruby::backward::cxxanyargs::rb_define_virtual_variable(const char*, VALUE (*)(...), void (*)(VALUE, ID, VALUE*))'
90 | rb_define_virtual_variable(const char *q, type *w, rb_gvar_setter_t *e)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__slice(std::__cxx11::basic_string<char>*, std::__cxx11::basic_string<char>::difference_type, std::__cxx11::basic_string<char>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:4812:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
4812 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__delete_at(std::__cxx11::basic_string<char>*, std::__cxx11::basic_string<char>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:4858:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
4858 | catch (std::out_of_range)
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg__at(const std::__cxx11::basic_string<char>*, std::__cxx11::basic_string<char>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:4868:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
4868 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg____getitem____SWIG_0(const std::__cxx11::basic_string<char>*, std::__cxx11::basic_string<char>::difference_type, std::__cxx11::basic_string<char>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:4890:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
4890 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_basic_string_Sl_char_Sg____getitem____SWIG_1(const std::__cxx11::basic_string<char>*, std::__cxx11::basic_string<char>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:4899:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
4899 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_double_Sg__slice(std::vector<double>*, std::vector<double>::difference_type, std::vector<double>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5287:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5287 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_double_Sg__delete_at(std::vector<double>*, std::vector<double>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5333:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5333 | catch (std::out_of_range)
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_double_Sg__at(const std::vector<double>*, std::vector<double>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5343:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5343 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_double_Sg____getitem____SWIG_0(const std::vector<double>*, std::vector<double>::difference_type, std::vector<double>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5365:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5365 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_double_Sg____getitem____SWIG_1(const std::vector<double>*, std::vector<double>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5374:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5374 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_XMLError_Sm__Sg__slice(std::vector<XMLError*>*, std::vector<XMLError*>::difference_type, std::vector<XMLError*>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5669:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5669 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_XMLError_Sm__Sg__delete_at(std::vector<XMLError*>*, std::vector<XMLError*>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5715:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5715 | catch (std::out_of_range)
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_XMLError_Sm__Sg__at(const std::vector<XMLError*>*, std::vector<XMLError*>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5725:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5725 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_XMLError_Sm__Sg____getitem____SWIG_0(const std::vector<XMLError*>*, std::vector<XMLError*>::difference_type, std::vector<XMLError*>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5747:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5747 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_XMLError_Sm__Sg____getitem____SWIG_1(const std::vectmake[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
or<XMLError*>*, std::vector<XMLError*>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5756:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5756 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_SedError_Sg__slice(std::vector<SedError>*, std::vector<SedError>::difference_type, std::vector<SedError>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5997:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
5997 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_SedError_Sg__delete_at(std::vector<SedError>*, std::vector<SedError>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:6043:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
6043 | catch (std::out_of_range)
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_SedError_Sg__at(const std::vector<SedError>*, std::vector<SedError>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:6053:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
6053 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_SedError_Sg____getitem____SWIG_0(const std::vector<SedError>*, std::vector<SedError>::difference_type, std::vector<SedError>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:6075:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
6075 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In function 'VALUE std_vector_Sl_SedError_Sg____getitem____SWIG_1(const std::vector<SedError>*, std::vector<SedError>::difference_type)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:6084:19: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=]
6084 | catch( std::out_of_range ) {
| ^~~~~~~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string<char>; Difference = long int]':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:4810:127: required from here
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:69: warning: comparison of integer expressions of different signedness: 'long int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:82: warning: comparison of integer expressions of different signedness: 'long int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string<char>; Difference = int]':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:4933:131: required from here
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:69: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:82: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector<double>; Difference = long int]':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5285:100: required from here
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:69: warning: comparison of integer expressions of different signedness: 'long int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:82: warning: comparison of integer expressions of different signedness: 'long int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector<double>; Difference = int]':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5408:104: required from here
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:69: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:82: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector<XMLError*>; Difference = long int]':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5667:107: required from here
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:69: warning: comparison of integer expressions of different signedness: 'long int' and 'std::vector<XMLError*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:82: warning: comparison of integer expressions of different signedness: 'long int' and 'std::vector<XMLError*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector<XMLError*>; Difference = int]':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5790:111: required from here
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:69: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<XMLError*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:82: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<XMLError*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector<SedError>; Difference = long int]':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:5995:104: required from here
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:69: warning: comparison of integer expressions of different signedness: 'long int' and 'std::vector<SedError>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:82: warning: comparison of integer expressions of different signedness: 'long int' and 'std::vector<SedError>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector<SedError>; Difference = int]':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:6118:108: required from here
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:69: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<SedError>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/ruby/libsedml_wrap.cpp:3830:82: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<SedError>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
3830 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size));
| ~~^~~~~~~
make[2]: *** [bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make:97: bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsedml_wrap.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:512: bindings/ruby/CMakeFiles/binding_ruby_lib.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 80%] Building CXX object bindings/r/CMakeFiles/binding_r_lib.dir/libsedml_wrap.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r && /usr/bin/g++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dbinding_r_lib_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/../.. -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/r/../.. -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/r -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/r/../swig -I/usr/include/R -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_r_lib.dir/libsedml_wrap.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/libsedml_wrap.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/libsedml_wrap.cpp: In function 'int _p_f_p_q_const__ASTNode__int(const ASTNode_t*)':
/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r/libsedml_wrap.cpp:67766:7: warning: unused variable 'ecode' [-Wunused-variable]
67766 | int ecode = 0;
| ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 79%] Building CXX object bindings/python/CMakeFiles/binding_python_lib.dir/libsedml_wrap.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python && /usr/bin/g++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dbinding_python_lib_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python/../.. -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/python/../.. -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/python -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/python/../swig -I/usr/include/python3.9 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_python_lib.dir/libsedml_wrap.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python/libsedml_wrap.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 82%] Linking CXX shared library libSEDML.so
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/r && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_r_lib.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lpthread -shared -Wl,-soname,libSEDML.so -o libSEDML.so CMakeFiles/binding_r_lib.dir/libsedml_wrap.cpp.o -L/usr/lib64/R/lib ../../sedml/libsedml-static.a -lR /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 84%] Built target binding_r_lib
make[1]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 83%] Linking CXX shared library _libsedml.so
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lpthread -shared -Wl,-soname,_libsedml.so -o _libsedml.so CMakeFiles/binding_python_lib.dir/libsedml_wrap.cpp.o ../../sedml/libsedml-static.a -lpython3.9 /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 84%] Built target binding_python_lib
make[1]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 81%] Building CXX object bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSEDML.cpp.o
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl && /usr/bin/g++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.4\" -DUSE_ZLIB -Dbinding_perl_lib_EXPORTS -I/usr/lib64/perl5/CORE -I/builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl -I/builddir/build/BUILD/libSEDML-0.4.4/bindings/perl/../swig -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_perl_lib.dir/LibSEDML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl/LibSEDML.cpp
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 85%] Linking CXX shared module LibSEDML.so
cd /builddir/build/BUILD/libSEDML-0.4.4/build/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lpthread -shared -o LibSEDML.so CMakeFiles/binding_perl_lib.dir/LibSEDML.cpp.o ../../sedml/libsedml-static.a -lperl /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl
make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
[ 85%] Built target binding_perl_lib
make[1]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.4/build'
make: *** [Makefile:185: all] Error 2
error: Bad exit status from /var/tmp/rpm-tmp.5diYSS (%build)
RPM build errors:
Bad exit status from /var/tmp/rpm-tmp.5diYSS (%build)
Child return code was: 1
EXCEPTION: [Error()]
Traceback (most recent call last):
File "/usr/lib/python3.8/site-packages/mockbuild/trace_decorator.py", line 95, in trace
result = func(*args, **kw)
File "/usr/lib/python3.8/site-packages/mockbuild/util.py", line 746, in do_with_status
raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode)
mockbuild.exception.Error: Command failed:
# bash --login -c /usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/libsedml.spec