Mock Version: 1.4.9
Mock Version: 1.4.9
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-maanova.spec'], chrootPath='/var/lib/mock/f29-build-18602-10059/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fdb8d0>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-maanova.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Wrote: /builddir/build/SRPMS/R-maanova-1.50.0-2.fc29.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-maanova.spec'], chrootPath='/var/lib/mock/f29-build-18602-10059/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fdb8d0>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-maanova.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.oWLucr
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf maanova
+ /usr/bin/mkdir -p maanova
+ cd maanova
+ /usr/bin/gzip -dc /builddir/build/SOURCES/maanova_1.50.0.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.sxg78R
+ umask 022
+ cd /builddir/build/BUILD
+ cd maanova
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.w84dQl
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64
+ cd maanova
+ chmod -x maanova/inst/LICENSE.txt maanova/inst/README.txt maanova/inst/STATUS.txt maanova/inst/TODO.txt
+ chmod -x maanova/src/makeratio.c maanova/src/masvd.c maanova/src/shift.c maanova/src/util.c
+ /usr/bin/sed -i -e 's/\r$//' maanova/DESCRIPTION
+ mkdir -p /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64/usr/lib64/R/library
+ R CMD INSTALL maanova -l /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64/usr/lib64/R/library
BUILDSTDERR: * installing *source* package 'maanova' ...
BUILDSTDERR: ** libs
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c makeratio.c -o makeratio.o
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c masvd.c -o masvd.o
BUILDSTDERR: masvd.c:114:2: warning: "/*" within comment [-Wcomment]
BUILDSTDERR:   /* work on a copy of x */
BUILDSTDERR:    
BUILDSTDERR: masvd.c:154:1: warning: "/*" within comment [-Wcomment]
BUILDSTDERR:  /*#ifndef IEEE_754
BUILDSTDERR:   
BUILDSTDERR: masvd.c:161:5: warning: "/*" within comment [-Wcomment]
BUILDSTDERR:      /* work on a copy of x */
BUILDSTDERR:       
BUILDSTDERR: masvd.c:165:2: warning: "/*" within comment [-Wcomment]
BUILDSTDERR:   /* ask for optimal size of work array */
BUILDSTDERR:    
BUILDSTDERR: masvd.c:189:2: warning: "/*" within comment [-Wcomment]
BUILDSTDERR:   /* ask for optimal size of work array */
BUILDSTDERR:    
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c shift.c -o shift.o
BUILDSTDERR: shift.c: In function 'shift':
BUILDSTDERR: shift.c:27:13: warning: unused variable 'k' [-Wunused-variable]
BUILDSTDERR:    int i, j, k;
BUILDSTDERR:              ^
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c util.c -o util.o
gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o maanova.so makeratio.o masvd.o shift.o util.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -L -L -lgfortran -lm -L/usr/lib64/R/lib -lR
BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64/usr/lib64/R/library/maanova/libs
BUILDSTDERR: ** R
BUILDSTDERR: ** data
BUILDSTDERR: ** demo
BUILDSTDERR: ** inst
BUILDSTDERR: ** byte-compile and prepare package for lazy loading
BUILDSTDERR: ** help
BUILDSTDERR: *** installing help indices
  converting help for package 'maanova'
BUILDSTDERR:     finding HTML links ... done
    PairContrast                            html  
    Rmaanova.version                        html  
    abf1                                    html  
    adjPval                                 html  
    arrayview                               html  
    consensus                               html  
    dyeswapfilter                           html  
    fill.missing                            html  
    fitmaanova                              html  
    fom                                     html  
    geneprofile                             html  
    gridcheck                               html  
    kidney                                  html  
    maanova-internal                        html  
    macluster                               html  
    matest                                  html  
    read.madata                             html  
    resiplot                                html  
    riplot                                  html  
    subset.madata                           html  
    summarytable                            html  
    transform.madata                        html  
    varplot                                 html  
    volcano                                 html  
    write.madata                            html  
BUILDSTDERR: ** building package indices
BUILDSTDERR: ** installing vignettes
BUILDSTDERR: ** testing if installed package can be loaded
BUILDSTDERR: * DONE (maanova)
+ test -d maanova/src
+ cd maanova/src
+ rm -f makeratio.o masvd.o shift.o util.o maanova.so
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64/usr/lib64/R/library/R.css
+ chmod -x /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64/usr/lib64/R/library/maanova/TODO.txt
+ chmod -x /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64/usr/lib64/R/library/maanova/STATUS.txt
+ chmod -x /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64/usr/lib64/R/library/maanova/README.txt
+ chmod -x /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64/usr/lib64/R/library/maanova/LICENSE.txt
+ chmod -x /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64/usr/lib64/R/library/maanova/doc/maanova.Rnw
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.50.0-2.fc29 --unique-debug-suffix -1.50.0-2.fc29.riscv64 --unique-debug-src-base R-maanova-1.50.0-2.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/maanova
extracting debug info from /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64/usr/lib64/R/library/maanova/libs/maanova.so
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
BUILDSTDERR: 26 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.oqBNOn
+ umask 022
+ cd /builddir/build/BUILD
+ cd maanova
+ /usr/bin/R CMD check maanova
* using log directory '/builddir/build/BUILD/maanova/maanova.Rcheck'
* using R version 3.5.0 (2018-04-23)
* using platform: riscv64-koji-linux-gnu (64-bit)
* using session charset: ASCII
* checking for file 'maanova/DESCRIPTION' ... OK
* this is package 'maanova' version '1.50.0'
* checking package namespace information ... OK
BUILDSTDERR: * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
BUILDSTDERR:   cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.7/bioc/src/contrib:
BUILDSTDERR:   cannot open URL 'https://bioconductor.org/packages/3.7/bioc/src/contrib/PACKAGES'
BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.7/data/annotation/src/contrib:
BUILDSTDERR:   cannot open URL 'https://bioconductor.org/packages/3.7/data/annotation/src/contrib/PACKAGES'
BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.7/data/experiment/src/contrib:
BUILDSTDERR:   cannot open URL 'https://bioconductor.org/packages/3.7/data/experiment/src/contrib/PACKAGES'
 NOTE
Package which this enhances but not available for checking: 'Rmpi'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'maanova' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... WARNING
Error: package or namespace load failed for 'maanova' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'BiocGenerics'
Execution halted
It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  'qvalue' 'snow'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
fdr: no visible global function definition for 'qvalue'
matest: no visible global function definition for 'makeMPIcluster'
matest: no visible global function definition for 'clusterApply'
matest: no visible global function definition for 'clusterEvalQ'
matest: no visible global function definition for 'stopCluster'
Undefined global functions or variables:
  clusterApply clusterEvalQ makeMPIcluster qvalue stopCluster
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
   'maanova.Rnw' ... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
BUILDSTDERR: See
BUILDSTDERR:   '/builddir/build/BUILD/maanova/maanova.Rcheck/00check.log'
BUILDSTDERR: for details.
+ exit 0
Processing files: R-maanova-1.50.0-2.fc29.riscv64
Provides: R-maanova = 1.50.0-2.fc29 R-maanova(riscv-64) = 1.50.0-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libRblas.so()(64bit) libRlapack.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgfortran.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) rtld(GNU_HASH)
Suggests: R-qvalue R-snow
Processing files: R-maanova-debugsource-1.50.0-2.fc29.riscv64
Provides: R-maanova-debugsource = 1.50.0-2.fc29 R-maanova-debugsource(riscv-64) = 1.50.0-2.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-maanova-debuginfo-1.50.0-2.fc29.riscv64
Provides: R-maanova-debuginfo = 1.50.0-2.fc29 R-maanova-debuginfo(riscv-64) = 1.50.0-2.fc29 debuginfo(build-id) = ccd2e86a7473307c6312b493a76fe62a1f3466e8
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-maanova-debugsource(riscv-64) = 1.50.0-2.fc29
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64
Wrote: /builddir/build/RPMS/R-maanova-1.50.0-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/R-maanova-debugsource-1.50.0-2.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/R-maanova-debuginfo-1.50.0-2.fc29.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.36F6wt
+ umask 022
+ cd /builddir/build/BUILD
+ cd maanova
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-maanova-1.50.0-2.fc29.riscv64
+ exit 0
Child return code was: 0