Mock Version: 1.4.14 Mock Version: 1.4.14 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/f31-build-74055-31050/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1564185600 Wrote: /builddir/build/SRPMS/staden-io_lib-1.12.4-17.fc31.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/f31-build-74055-31050/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1564185600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.n8Nj9c + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf io_lib-1.12.4 + /usr/bin/gzip -dc /builddir/build/SOURCES/io_lib-1.12.4.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd io_lib-1.12.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + mv io_lib-config.in staden-io_lib-config.in + sed -i s/libread/libstaden-read/g io_lib/Makefile.in progs/Makefile.in + sed -i s/lread/lstaden-read/ staden-io_lib-config.in + sed -i s/io_lib-config/staden-io_lib-config/g configure Makefile.in + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.HgFZpg + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess BUILDSTDERR: ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub BUILDSTDERR: ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static '/usr/lib/rpm/redhat/config.guess' -> './config.guess' '/usr/lib/rpm/redhat/config.sub' -> './config.sub' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for riscv64-koji-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking build system type... riscv64-koji-linux-gnu checking host system type... riscv64-koji-linux-gnu checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for riscv64-koji-linux-gnu-g++... no checking for riscv64-koji-linux-gnu-c++... no checking for riscv64-koji-linux-gnu-gpp... no checking for riscv64-koji-linux-gnu-aCC... no checking for riscv64-koji-linux-gnu-CC... no checking for riscv64-koji-linux-gnu-cxx... no checking for riscv64-koji-linux-gnu-cc++... no checking for riscv64-koji-linux-gnu-cl.exe... no checking for riscv64-koji-linux-gnu-FCC... no checking for riscv64-koji-linux-gnu-KCC... no checking for riscv64-koji-linux-gnu-RCC... no checking for riscv64-koji-linux-gnu-xlC_r... no checking for riscv64-koji-linux-gnu-xlC... no checking for g++... no checking for c++... no checking for gpp... no checking for aCC... no checking for CC... no checking for cxx... no checking for cc++... no checking for cl.exe... no checking for FCC... no checking for KCC... no checking for RCC... no checking for xlC_r... no checking for xlC... no checking whether we are using the GNU C++ compiler... no checking whether g++ accepts -g... no checking dependency style of g++... none checking for riscv64-koji-linux-gnu-g77... no checking for riscv64-koji-linux-gnu-xlf... no checking for riscv64-koji-linux-gnu-f77... no checking for riscv64-koji-linux-gnu-frt... no checking for riscv64-koji-linux-gnu-pgf77... no checking for riscv64-koji-linux-gnu-cf77... no checking for riscv64-koji-linux-gnu-fort77... no checking for riscv64-koji-linux-gnu-fl32... no checking for riscv64-koji-linux-gnu-af77... no checking for riscv64-koji-linux-gnu-xlf90... no checking for riscv64-koji-linux-gnu-f90... no checking for riscv64-koji-linux-gnu-pgf90... no checking for riscv64-koji-linux-gnu-pghpf... no checking for riscv64-koji-linux-gnu-epcf90... no checking for riscv64-koji-linux-gnu-gfortran... no checking for riscv64-koji-linux-gnu-g95... no checking for riscv64-koji-linux-gnu-xlf95... no checking for riscv64-koji-linux-gnu-f95... no checking for riscv64-koji-linux-gnu-fort... no checking for riscv64-koji-linux-gnu-ifort... no checking for riscv64-koji-linux-gnu-ifc... no checking for riscv64-koji-linux-gnu-efc... no checking for riscv64-koji-linux-gnu-pgf95... no BUILDSTDERR: checking for riscv64-koji-linux-gnucat: 'ld.so.conf.d/*.conf': No such file or directory + sed -i 's+\(search_path_spec="\)+\1/lib64 /usr/lib64 +' libtool + make -j4 -lf95... no checking for riscv64-koji-linux-gnu-ftn... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for riscv64-koji-linux-gnu-ar... no checking for ar... ar checking for riscv64-koji-linux-gnu-ranlib... no checking for ranlib... ranlib checking for riscv64-koji-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool appending configuration tag "F77" to libtool host=riscv64-koji-linux-gnu Fixing libtool for -rpath problems. checking for gawk... (cached) gawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 7.65.3 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking whether byte ordering is bigendian... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking for inline... inline checking for mode_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for library containing cos... -lm checking for strdup... yes configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating staden-io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands make all-recursive make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' Making all in io_lib make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-mkdir: cannot create directory '.libs': File exists BUILDSTDERR: translate.c: In function 'read2exp': BUILDSTDERR: translate.c:292:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 292 | if (p = strrchr(EN, '/')) BUILDSTDERR: | ^ BUILDSTDERR: translate.c:302:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 302 | if (cp = strrchr(read->trace_name, '/')) BUILDSTDERR: | ^~ BUILDSTDERR: translate.c: In function 'exp2read': BUILDSTDERR: translate.c:650:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 650 | if (fp = open_trace_file(exp_get_entry(e, EFLT_LN), fn)) { BUILDSTDERR: | ^~ D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c mkdir .libs mkdir .libs gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c compression.c -fPIC -DPIC -o .libs/libstaden_read_la-compression.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c translate.c -fPIC -DPIC -o .libs/libstaden_read_la-translate.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhatztr.c: In function 'mfread_ztr': BUILDSTDERR: ztr.c:335:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 335 | while (chunk = ztr_read_chunk_hdr(fp)) { BUILDSTDERR: | ^~~~~ BUILDSTDERR: ztr_translate.c:335:14: warning: 'ztr_encode_confidence_1' defined but not used [-Wunused-function] BUILDSTDERR: 335 | static char *ztr_encode_confidence_1(ztr_t *z, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:182:14: warning: 'ztr_encode_samples_T' defined but not used [-Wunused-function] BUILDSTDERR: 182 | static char *ztr_encode_samples_T(ztr_t *z, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:175:14: warning: 'ztr_encode_samples_G' defined but not used [-Wunused-function] BUILDSTDERR: 175 | static char *ztr_encode_samples_G(ztr_t *z, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:168:14: warning: 'ztr_encode_samples_C' defined but not used [-Wunused-function] BUILDSTDERR: 168 | static char *ztr_encode_samples_C(ztr_t *z, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: ztr_translate.c:161:14: warning: 'ztr_encode_samples_A' defined but not used [-Wunused-function] BUILDSTDERR: 161 | static char *ztr_encode_samples_A(ztr_t *z, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: deflate_interlaced.c: In function 'calc_bit_lengths': BUILDSTDERR: deflate_interlaced.c:516:9: warning: variable 'map' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 516 | int map[258]; BUILDSTDERR: | ^~~ BUILDSTDERR: deflate_interlaced.c: In function 'huffman_multi_decode': BUILDSTDERR: deflate_interlaced.c:1760:9: warning: variable 'nc' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 1760 | int nc; BUILDSTDERR: | ^~ BUILDSTDERR: deflate_interlaced.c:1759:23: warning: variable 'c' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 1759 | huffman_codes_t **c; BUILDSTDERR: | ^ /redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c deflate_interlaced.c -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fpoint.c -fPIC -DPIC -o .libs/libstaden_read_la-fpoint.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c BUILDSTDERR: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOABI.c -fPIseqIOABI.c: In function 'getABIString': BUILDSTDERR: seqIOABI.c:259:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 259 | if (off = getABIIndexEntryLW(fp, indexO, label, count, 4, &len)) { BUILDSTDERR: | ^~~ BUILDSTDERR: seqIOABI.c: In function 'mfread_abi': BUILDSTDERR: seqIOABI.c:657:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 657 | if (p = strchr(commstrp, '\n')) BUILDSTDERR: | ^ BUILDSTDERR: seqIOABI.c:662:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 662 | } while(commstrp = p); BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: ctfCompress.c: In function 'ctfCompress2': BUILDSTDERR: ctfCompress.c:270:80: warning: format '%d' expects argument of type 'int', but argument 7 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: 270 | printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n", BUILDSTDERR: | ~^ BUILDSTDERR: | | BUILDSTDERR: | int BUILDSTDERR: | %ld BUILDSTDERR: ctfCompress.c:270:92: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: 270 | printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n", BUILDSTDERR: | ~^ BUILDSTDERR: | | BUILDSTDERR: | int BUILDSTDERR: | %ld BUILDSTDERR: ctfCompress.c: In function 'ctfCompress3': BUILDSTDERR: ctfCompress.c:607:116: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: 607 | printf (" // compress3:\n// %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n", BUILDSTDERR: | ~^ BUILDSTDERR: | | BUILDSTDERR: | int BUILDSTDERR: | %ld BUILDSTDERR: ctfCompress.c:607:128: warning: format '%d' expects argument of type 'int', but argument 9 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: 607 | printf (" // compress3:\n// %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n", BUILDSTDERR: | ~^ BUILDSTDERR: | | BUILDSTDERR: | int BUILDSTDERR: | %ld C -DPIC -o .libs/libstaden_read_la-seqIOABI.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOALF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-ctfCompress.lo `test -f 'ctfCompress.c' || echo './'`ctfCompress.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOCTF.lo `test -f 'seqIOCTF.c' || echo './'`seqIOCTF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ctfCompress.c -fPIC -DPIC -o .libs/libstaden_read_la-ctfCompress.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOCTF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOCTF.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo './'`expFileIO.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-misc_scf.lo `test -f 'misc_scf.c' || echo './'`misc_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c expFileIO.c -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o BUILDSTDERR: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-securexpFileIO.c: In function 'exp_print_mline': BUILDSTDERR: expFileIO.c:198:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 198 | if (c = strchr(p, '\n')) BUILDSTDERR: | ^ BUILDSTDERR: expFileIO.c:207:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 207 | if (c = strchr(p, '\n')) { BUILDSTDERR: | ^ BUILDSTDERR: expFileIO.c: In function 'opos2str': BUILDSTDERR: expFileIO.c:393:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] BUILDSTDERR: 393 | if (dir == 0) BUILDSTDERR: | ^ BUILDSTDERR: seqIOPlain.c: In function 'mfread_pln': BUILDSTDERR: seqIOPlain.c:150:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 150 | if (p = strchr(type, ' ')) BUILDSTDERR: | ^ BUILDSTDERR: In file included from misc_scf.c:33: BUILDSTDERR: misc_scf.c: In function 'is_scf': BUILDSTDERR: ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: misc_scf.c:151:19: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 151 | ok = (magic==SCF_MAGIC); BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: misc_scf.c:151:19: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 151 | ok = (magic==SCF_MAGIC); BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from ../io_lib/Read.h:44, BUILDSTDERR: from read_scf.c:46: BUILDSTDERR: read_scf.c: In function 'read_scf_header': BUILDSTDERR: ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 67 | if (h->magic_number != SCF_MAGIC) return -1; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 67 | if (h->magic_number != SCF_MAGIC) return -1; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: In file included from write_scf.c:60: BUILDSTDERR: write_scf.c: In function 'mfwrite_scf': BUILDSTDERR: ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 389 | scf->header.magic_number = SCF_MAGIC; BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] BUILDSTDERR: 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') BUILDSTDERR: | ^~ BUILDSTDERR: write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC' BUILDSTDERR: 389 | scf->header.magic_number = SCF_MAGIC; BUILDSTDERR: | ^~~~~~~~~ ity -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seqIOPlain.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOPlain.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c misc_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c read_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c write_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c BUILDSTDERR: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpmsrf.c: In function 'get_hi_bits': BUILDSTDERR: srf.c:1106:59: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] BUILDSTDERR: 1106 | val = (block->data[block->byte]) & (1<<(8-block->bit))-1; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~^~ BUILDSTDERR: srf.c:1126:21: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] BUILDSTDERR: 1126 | & (1<<(nbits-bnum))-1; BUILDSTDERR: | ~~~~~~~~~~~~~~~~~^~ BUILDSTDERR: srf.c: In function 'pack_trace_suffix': BUILDSTDERR: srf.c:1383:10: warning: variable 'width' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 1383 | int width = 0; BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf.c: In function 'partial_decode_ztr': BUILDSTDERR: srf.c:1604:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 1604 | while (chunk = ztr_read_chunk_hdr(mf)) { BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf.c: In function 'srf_find_trace': BUILDSTDERR: srf.c:2025:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 2025 | fread(dpos, 1, item_sz, srf->fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sff.c -fPIC -DPIC -o .libs/libstaden_read_la-sff.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf.c -fPIC -DPIC -o .libs/libstaden_read_la-srf.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c array.c -fPIC -DPIC -o .libs/libstaden_read_la-array.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c compress.c -fPIC -DPIC -o .libs/libstaden_read_la-compress.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c error.c -fPIC -DPIC -o .libs/libstaden_read_la-error.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c files.c -fPIC -DPIC -o .libs/libstaden_read_la-files.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_open_trace_file.c: In function 'find_file_tar': BUILDSTDERR: open_trace_file.c:143:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 143 | if (cp = strchr(path, '\n')) BUILDSTDERR: | ^~ BUILDSTDERR: open_trace_file.c: In function 'sff_hash_query': BUILDSTDERR: open_trace_file.c:537:14: warning: assignment to 'FILE **' {aka 'struct _IO_FILE **'} from incompatible pointer type 'FILE *' {aka 'struct _IO_FILE *'} [-Wincompatible-pointer-types] BUILDSTDERR: 537 | hf->afp = hf->hfp = NULL; /* will be closed by our parent */ BUILDSTDERR: | ^ BUILDSTDERR: open_trace_file.c:530:18: warning: variable 'fp_copy' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 530 | static FILE *fp_copy = NULL; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: open_trace_file.c: In function 'find_file_sff': BUILDSTDERR: open_trace_file.c:748:14: warning: variable 'nkey' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 748 | uint32_t nkey, nflows, chdrlen, rhdrlen, dlen, magic; BUILDSTDERR: | ^~~~ BUILDSTDERR: open_trace_file.c: In function 'find_file_dir': BUILDSTDERR: open_trace_file.c:914:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 914 | if (cp = strrchr(file, '/')) { BUILDSTDERR: | ^~ BUILDSTDERR: open_trace_file.c: In function 'open_path_mfile': BUILDSTDERR: open_trace_file.c:1087:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 1087 | if (cp = strrchr(relative_path, '/')) BUILDSTDERR: | ^~ BUILDSTDERR: open_trace_file.c:1089:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 1089 | if (fp = find_file_dir(file, relative_path)) BUILDSTDERR: | ^~ BUILDSTDERR: open_trace_file.c: In function 'find_file_sff': BUILDSTDERR: open_trace_file.c:798:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 798 | fread(index_format, 1, 8, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: open_trace_file.c: In function 'find_file_dir': BUILDSTDERR: open_trace_file.c:929:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 929 | fread(magic, 1, 4, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: open_trace_file.c:940:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 940 | fread(magic, 1, 8, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: open_trace_file.c:950:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 950 | fread(magic, 1, 5, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~ FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c find.c -fPIC -DPIC -o .libs/libstaden_read_la-find.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mach-io.c -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c open_trace_file.c -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c read_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-read_alloc.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c BUILDSTDERR: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lopen_trace_file.c: In function 'sff_sorted_query': BUILDSTDERR: open_trace_file.c:704:5: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 704 | fseek(fp, offset, SEEK_SET); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from /usr/include/string.h:494, BUILDSTDERR: from strings.c:22: BUILDSTDERR: In function 'strncpy', BUILDSTDERR: inlined from 'c2fstr' at strings.c:49:5: BUILDSTDERR: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] BUILDSTDERR: 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from strings.c:19: BUILDSTDERR: strings.c: In function 'c2fstr': BUILDSTDERR: strings.c:48:18: note: length computed here BUILDSTDERR: 48 | i = min((int)strlen(c),max_f); BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: ../io_lib/misc.h:64:23: note: in definition of macro 'min' BUILDSTDERR: 64 | #define min(A,B) ( ( (A) < (B) ) ? (A) : (B) ) BUILDSTDERR: | ^ BUILDSTDERR: vlen.c: In function 'vflen': BUILDSTDERR: vlen.c:86:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 86 | for(; c=*++cp;) { BUILDSTDERR: | ^ BUILDSTDERR: vlen.c:57:9: warning: variable 'i' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 57 | int i; BUILDSTDERR: | ^ ib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c strings.c -fPIC -DPIC -o .libs/libstaden_read_la-strings.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c traceType.c -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c xalloc.c -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c vlen.c -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o libstaden_read_la-pooledhash_table.c: In function 'HashFileFopen': BUILDSTDERR: hash_table.c:1140:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1140 | fread(hf->archives[i], 1, fnamelen, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1156:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1156 | fread(&hf->headers[i].pos, 8, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1157:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1157 | fread(&hf->headers[i].size, 4, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1169:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1169 | fread(&hf->footers[i].pos, 8, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1170:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1170 | fread(&hf->footers[i].size, 4, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c: In function 'HashFileQuery': BUILDSTDERR: hash_table.c:1368:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1368 | fread(k, klen, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1369:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1369 | fread(&headfoot, 1, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1372:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1372 | fread(&pos, 8, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1376:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1376 | fread(&size, 4, 1, hf->hfp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c: In function 'HashFileExtract': BUILDSTDERR: hash_table.c:1506:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1506 | fread(&data[pos], head->size, 1, hf->afp[head->archive_no]); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1516:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1516 | fread(&data[pos], hfi.size, 1, hf->afp[hfi.archive]); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_table.c:1526:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 1526 | fread(&data[pos], foot->size, 1, hf->afp[foot->archive_no]); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: jenkins_lookup3.c:654:17: warning: 'hashbig' defined but not used [-Wunused-function] BUILDSTDERR: 654 | static uint32_t hashbig( const void *key, size_t length, uint32_t initval) BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: jenkins_lookup3.c:288:17: warning: 'hashlittle' defined but not used [-Wunused-function] BUILDSTDERR: 288 | static uint32_t hashlittle( const void *key, size_t length, uint32_t initval) BUILDSTDERR: | ^~~~~~~~~~ BUILDSTDERR: jenkins_lookup3.c:223:13: warning: 'hashword2' defined but not used [-Wunused-function] BUILDSTDERR: 223 | static void hashword2 ( BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: jenkins_lookup3.c:179:17: warning: 'hashword' defined but not used [-Wunused-function] BUILDSTDERR: 179 | static uint32_t hashword( BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: mFILE.c: In function 'mfreopen': BUILDSTDERR: mFILE.c:194:16: warning: variable 'w' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 194 | int r = 0, w = 0, a = 0, b = 0, x = 0, mode = 0; BUILDSTDERR: | ^ BUILDSTDERR: mFILE.c: In function 'mfflush': BUILDSTDERR: mFILE.c:487:10: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] BUILDSTDERR: 487 | if (!mf->mode & MF_MODEX) BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: pooled_alloc.c: In function 'new_pool': BUILDSTDERR: pooled_alloc.c:37:11: warning: unused variable 'cp' [-Wunused-variable] BUILDSTDERR: 37 | char *cp; BUILDSTDERR: | ^~ BUILDSTDERR: pooled_alloc.c:35:12: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: 35 | size_t i, n = PSIZE / p->dsize; BUILDSTDERR: | ^ BUILDSTDERR: pooled_alloc.c: In function 'pool_alloc': BUILDSTDERR: pooled_alloc.c:65:12: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: 65 | size_t i; BUILDSTDERR: | ^ BUILDSTDERR: pooled_alloc.c: In function 'pool_free': BUILDSTDERR: pooled_alloc.c:95:19: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: 95 | size_t psize, i; BUILDSTDERR: | ^ BUILDSTDERR: pooled_alloc.c:95:12: warning: unused variable 'psize' [-Wunused-variable] BUILDSTDERR: 95 | size_t psize, i; BUILDSTDERR: | ^~~~~ BUILDSTDERR: mFILE.c:493:2: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 493 | ftruncate(fileno(mf->fp), ftell(mf->fp)); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ _alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_table.c -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c jenkins_lookup3.c -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mFILE.c -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pooled_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libstaden-read.la -rpath /usr/lib64 -version-info 2:2:1 libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-ctfCompress.lo libstaden_read_la-seqIOCTF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo -lz -lcurl -lm BUILDSTDERR: gcc -shared .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-ctfCompress.o .libs/libstaden_read_la-seqIOCTF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstadeextract_qual.c: In function 'main': BUILDSTDERR: extract_qual.c:317:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 317 | if (cp = strchr(line, '\n')) BUILDSTDERR: | ^~ BUILDSTDERR: extract_seq.c: In function 'main': BUILDSTDERR: extract_seq.c:199:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 199 | if (cp = strchr(line, '\n')) BUILDSTDERR: | ^~ BUILDSTDERR: convert_trace.c:16:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] BUILDSTDERR: 16 | static char const rcsid[] = "$Id: convert_trace.c,v 1.12 2008-02-20 16:07:44 jkbonfield Exp $"; BUILDSTDERR: | ^~~~~ BUILDSTDERR: extract_fastq.c: In function 'main': BUILDSTDERR: extract_fastq.c:141:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 141 | if (cp = strchr(line, '\n')) BUILDSTDERR: | ^~ BUILDSTDERR: index_tar.c: In function 'main': BUILDSTDERR: index_tar.c:72:21: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 72 | fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: index_tar.c:82:17: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 82 | fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ n_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o -lz -lcurl -lm -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -Wl,-soname -Wl,libstaden-read.so.1 -o .libs/libstaden-read.so.1.1.2 (cd .libs && rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1) (cd .libs && rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so) creating libstaden-read.la (cd .libs && rm -f libstaden-read.la && ln -s ../libstaden-read.la libstaden-read.la) make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' Making all in progs make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c convert_trace.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c makeSCF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extract_seq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extract_qual.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extract_fastq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c index_tar.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_dump.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_info.c BUILDSTDERR: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -greconvert_trace.c: In function 'main': BUILDSTDERR: convert_trace.c:743:23: warning: '%s' directive writing up to 8191 bytes into a region of size 2042 [-Wformat-overflow=] BUILDSTDERR: 724 | infname = line2; BUILDSTDERR: | ~~~~~ BUILDSTDERR: ...... BUILDSTDERR: 743 | sprintf(buf, "ERROR %s", infname); BUILDSTDERR: | ^~ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from convert_trace.c:5: BUILDSTDERR: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 8198 bytes into a destination of size 2048 BUILDSTDERR: 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 37 | __bos (__s), __fmt, __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_tar.c: In function 'load_map': BUILDSTDERR: hash_tar.c:78:5: warning: implicit declaration of function 'close'; did you mean 'pclose'? [-Wimplicit-function-declaration] BUILDSTDERR: 78 | close(fp); BUILDSTDERR: | ^~~~~ BUILDSTDERR: | pclose BUILDSTDERR: hash_tar.c: In function 'main': BUILDSTDERR: hash_tar.c:273:11: warning: unused variable 'fp' [-Wunused-variable] BUILDSTDERR: 273 | FILE *fp; BUILDSTDERR: | ^~ BUILDSTDERR: hash_tar.c: In function 'accumulate': BUILDSTDERR: hash_tar.c:136:21: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 136 | fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_tar.c:146:17: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 146 | fread(member, 1, size > 256 ? 256 : size, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_tar.c:204:1: warning: control reaches end of non-void function [-Wreturn-type] BUILDSTDERR: 204 | } BUILDSTDERR: | ^ BUILDSTDERR: hash_extract.c: In function 'extract': BUILDSTDERR: hash_extract.c:20:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 20 | if (data = HashFileExtract(hf, file, &len)) { BUILDSTDERR: | ^~~~ BUILDSTDERR: hash_extract.c: In function 'main': BUILDSTDERR: hash_extract.c:74:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 74 | if (c = strchr(file, '\n')) BUILDSTDERR: | ^ BUILDSTDERR: hash_sff.c: In function 'main': BUILDSTDERR: hash_sff.c:207:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 207 | while (len = fread(block, 1, 8192, fp)) { BUILDSTDERR: | ^~~ BUILDSTDERR: hash_sff.c:230:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 230 | fread(hdr, 1, 31, fp); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_sff.c:258:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 258 | fread(hdr, 1, 31, fpout); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: append_sff.c: In function 'main': BUILDSTDERR: append_sff.c:116:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 116 | fread(chdr, 1, 31, fpout); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: hash_tar.c: In function 'main': BUILDSTDERR: hash_tar.c:327:13: warning: 'hf' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 327 | realloc(hf->headers, (hf->nheaders+1) * BUILDSTDERR: | ~~^~~~~~~~~ BUILDSTDERR: srf_index_hash.c: In function 'main': BUILDSTDERR: srf_index_hash.c:138:5: warning: ignoring return value of 'ftruncate', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 138 | ftruncate(fileno(srf->fp), ftello(srf->fp)); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scf_update.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c get_comment.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_tar.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_extract.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_list.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c trace_dump.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_sff.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c append_sff.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ztr_dump.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_dump_all.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_index_hash.c BUILDSTDERR: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -csrf_dump_all.c: In function 'dump_solexa': BUILDSTDERR: srf_dump_all.c:309:50: warning: pointer targets in passing argument 3 of 'dump_conf4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: 309 | dump_conf4_solexa(files[1], seq, chunks[0]->data+1, chunks[0]->dlength-1); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: srf_dump_all.c:227:58: note: expected 'signed char *' but argument is of type 'char *' BUILDSTDERR: 227 | void dump_conf4_solexa(FILE *fp, char *seq, signed char *bytes, int nbytes) { BUILDSTDERR: | ~~~~~~~~~~~~~^~~~~ BUILDSTDERR: srf_dump_all.c:320:25: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: 320 | chunks[i]->data+2, chunks[i]->dlength-2); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: srf_dump_all.c:195:35: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: 195 | int baseline, unsigned char *bytes, int nbytes) { BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: srf_dump_all.c:333:25: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: 333 | chunks[i]->data+2, chunks[i]->dlength-2); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: srf_dump_all.c:195:35: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: 195 | int baseline, unsigned char *bytes, int nbytes) { BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: srf_dump_all.c:346:25: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] BUILDSTDERR: 346 | chunks[i]->data+2, chunks[i]->dlength-2); BUILDSTDERR: | ~~~~~~~~~~~~~~~^~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: srf_dump_all.c:195:35: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: 195 | int baseline, unsigned char *bytes, int nbytes) { BUILDSTDERR: | ~~~~~~~~~~~~~~~^~~~~ BUILDSTDERR: srf_dump_all.c: In function 'read_filter_from_file': BUILDSTDERR: srf_dump_all.c:484:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 484 | long lStartPos; /* Offset of start of current line */ BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: srf_dump_all.c:483:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 483 | long lLineLen; /* Current line length */ BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: srf_dump_all.c:506:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 506 | fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */ BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf2fastq.c: In function 'ztr2fastq': BUILDSTDERR: srf2fastq.c:369:17: warning: variable 'start' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 369 | int start, length; BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf2fastq.c:480:21: warning: variable 'start' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 480 | int start, length; BUILDSTDERR: | ^~~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from srf_dump_all.c:37: BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'read_filter_from_file' at srf_dump_all.c:566:7: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'read_filter_from_file' at srf_dump_all.c:555:7: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_filter.c: In function 'read_filter_from_file': BUILDSTDERR: srf_filter.c:164:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 164 | long lStartPos; /* Offset of start of current line */ BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: srf_filter.c:163:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 163 | long lLineLen; /* Current line length */ BUILDSTDERR: | ^~~~~~~~ BUILDSTDERR: srf_filter.c: In function 'dump_read_filter': BUILDSTDERR: srf_filter.c:457:33: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] BUILDSTDERR: 457 | printf("\tread[%d] = %s\n", hi->data.i, hi->key); BUILDSTDERR: | ~^ ~~~~~~~~~~ BUILDSTDERR: | | | BUILDSTDERR: | int uint64_t {aka long unsigned int} BUILDSTDERR: | %ld BUILDSTDERR: srf_filter.c: In function 'add_readpair_region': BUILDSTDERR: srf_filter.c:587:16: warning: pointer targets in assignment from 'unsigned char *' to 'char *' differ in signedness [-Wpointer-sign] BUILDSTDERR: 587 | c.data = data; BUILDSTDERR: | ^ BUILDSTDERR: srf_filter.c: In function 'srf_filter': BUILDSTDERR: srf_filter.c:699:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 699 | while (chunk = ztr_read_chunk_hdr(in_srf->mf)) { BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf_filter.c:788:23: warning: left-hand operand of comma expression has no effect [-Wunused-value] BUILDSTDERR: 788 | stderr, "Error making trace header.\nExiting.\n"; BUILDSTDERR: | ^ BUILDSTDERR: srf_filter.c:788:23: warning: statement with no effect [-Wunused-value] BUILDSTDERR: srf_filter.c:794:66: warning: pointer targets in passing argument 3 of 'srf_construct_trace_hdr' differ in signedness [-Wpointer-sign] BUILDSTDERR: 794 | srf_construct_trace_hdr(&out_srf->th, in_srf->th.id_prefix, trace_hdr, trace_hdr_size); BUILDSTDERR: | ^~~~~~~~~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: In file included from srf_filter.c:47: BUILDSTDERR: ../io_lib/srf.h:144:18: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: 144 | srf_trace_hdr_t *srf_construct_trace_hdr(srf_trace_hdr_t *th, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_info.c: In function 'partial_decode_ztr2': BUILDSTDERR: srf_info.c:411:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 411 | while (chunk = ztr_read_chunk_hdr(mf)) { BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf_filter.c:894:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] BUILDSTDERR: 894 | while (chunk = ztr_read_chunk_hdr(in_srf->mf)) { BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf_filter.c:980:78: warning: pointer targets in passing argument 4 of 'srf_construct_trace_body' differ in signedness [-Wpointer-sign] BUILDSTDERR: 980 | srf_construct_trace_body(&new_tb, name+strlen(in_srf->th.id_prefix), -1, mf->data, mf->size, old_tb.flags); BUILDSTDERR: | ~~^~~~~~ BUILDSTDERR: | | BUILDSTDERR: | char * BUILDSTDERR: In file included from srf_filter.c:47: BUILDSTDERR: ../io_lib/srf.h:152:19: note: expected 'unsigned char *' but argument is of type 'char *' BUILDSTDERR: 152 | srf_trace_body_t *srf_construct_trace_body(srf_trace_body_t *th, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_filter.c: In function 'read_filter_from_file': BUILDSTDERR: srf_filter.c:186:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 186 | fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */ BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_dump_all.c:651:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_dump_all.c:640:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_dump_all.c:622:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf2fastq.c:248:13: warning: 'regn' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 248 | regn_t *regn; BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from /usr/include/stdio.h:867, BUILDSTDERR: from srf_filter.c:37: BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'read_filter_from_file' at srf_filter.c:246:7: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'read_filter_from_file' at srf_filter.c:235:7: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_filter.c:348:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_filter.c:337:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: In function 'fprintf', BUILDSTDERR: inlined from 'get_read_filter' at srf_filter.c:319:6: BUILDSTDERR: /usr/include/bits/stdio2.h:100:10: warning: '%s' directive argument is null [-Wformat-overflow=] BUILDSTDERR: 100 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, BUILDSTDERR: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: 101 | __va_arg_pack ()); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~ BUILDSTDERR: srf_filter.c: In function 'srf_filter': BUILDSTDERR: srf_filter.c:970:19: warning: 'output_trace_header' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 970 | if( output_trace_header ) { BUILDSTDERR: | ^ BUILDSTDERR: srf_list.c: In function 'count_file': BUILDSTDERR: srf_list.c:75:19: warning: unused variable 'data' [-Wunused-variable] BUILDSTDERR: 75 | unsigned char data[16]; BUILDSTDERR: | ^~~~ BUILDSTDERR: srf_list.c:74:22: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: 74 | int item_sz = 9, i; BUILDSTDERR: | ^ BUILDSTDERR: srf_list.c:73:11: warning: variable 'ipos' set but not used [-Wunused-but-set-variable] BUILDSTDERR: 73 | off_t ipos, skip; BUILDSTDERR: | ^~~~ BUILDSTDERR: srf_list.c:72:13: warning: unused variable 'count' [-Wunused-variable] BUILDSTDERR: 72 | int64_t count = 0; BUILDSTDERR: | ^~~~~ BUILDSTDERR: srf_list.c: In function 'main': BUILDSTDERR: srf_list.c:158:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] BUILDSTDERR: 158 | printf("%s: %d sequences\n", argv[i], c); BUILDSTDERR: | ~^ ~ BUILDSTDERR: | | | BUILDSTDERR: | int int64_t {aka long int} BUILDSTDERR: | %ld srf_extract_linear.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_extract_hash.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf2fastq.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf2fasta.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_filter.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_info.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c srf_list.c /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm mkdir .libs /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -lm creating convert_trace /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm creating makeSCF creating extract_seq /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o index_tar index_tar.o -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_dump scf_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -lm creating extract_qual /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_info scf_info.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/extract_fastq extract_fastq.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o index_tar index_tar.o -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o scf_update scf_update.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_dump scf_dump.o ../io_lib/.libs/libstaden-read.so -lm creating extract_fastq /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o get_comment get_comment.o ../io_lib/libstaden-read.la -lm creating scf_dump /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_tar hash_tar.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_info scf_info.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/scf_update scf_update.o ../io_lib/.libs/libstaden-read.so -lm creating scf_info /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_extract hash_extract.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/get_comment get_comment.o ../io_lib/.libs/libstaden-read.so -lm creating scf_update /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_list hash_list.o ../io_lib/libstaden-read.la -lm creating get_comment gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_tar hash_tar.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o trace_dump trace_dump.o ../io_lib/libstaden-read.la -lm creating hash_tar /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o hash_sff hash_sff.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_extract hash_extract.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_list hash_list.o ../io_lib/.libs/libstaden-read.so -lm creating hash_extract /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o append_sff append_sff.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/trace_dump trace_dump.o ../io_lib/.libs/libstaden-read.so -lm creating hash_list /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ztr_dump ztr_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/hash_sff hash_sff.o ../io_lib/.libs/libstaden-read.so -lm creating trace_dump /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_dump_all srf_dump_all.o ../io_lib/libstaden-read.la -lm creating hash_sff /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_index_hash srf_index_hash.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/append_sff append_sff.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/ztr_dump ztr_dump.o ../io_lib/.libs/libstaden-read.so -lm creating append_sff /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_extract_linear srf_extract_linear.o ../io_lib/libstaden-read.la -lm creating ztr_dump gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_dump_all srf_dump_all.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_extract_hash srf_extract_hash.o ../io_lib/libstaden-read.la -lm creating srf_dump_all gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_index_hash srf_index_hash.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf2fastq srf2fastq.o ../io_lib/libstaden-read.la -lm creating srf_index_hash /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf2fasta srf2fasta.o ../io_lib/libstaden-read.la -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_extract_linear srf_extract_linear.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_extract_hash srf_extract_hash.o ../io_lib/.libs/libstaden-read.so -lm creating srf_extract_linear /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_filter srf_filter.o ../io_lib/libstaden-read.la -lm BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstac+ RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 k-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf2fastq srf2fastq.o ../io_lib/.libs/libstaden-read.so -lm creating srf_extract_hash /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm creating srf2fastq gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf2fasta srf2fasta.o ../io_lib/.libs/libstaden-read.so -lm /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm creating srf2fasta gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm creating srf_filter creating srf_info gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm creating srf_list make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' Making all in tests make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Ccpqmf + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64 + cd io_lib-1.12.4 + rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64 + make install DESTDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64 BUILDSTDERR: libtool: install: warning: remember to run `libtool --finish /usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' Making install in io_lib make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' test -z "/usr/lib64" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/lib64" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libstaden-read.la' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/lib64/libstaden-read.la' /usr/bin/install -c .libs/libstaden-read.so.1.1.2 /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/lib64/libstaden-read.so.1.1.2 (cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so.1 || { rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1; }; }) (cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so; }; }) /usr/bin/install -c .libs/libstaden-read.lai /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/lib64/libstaden-read.la make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' Making install in progs make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'convert_trace' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/convert_trace' /usr/bin/install -c .libs/convert_trace /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/convert_trace /bin/sh ../libtool --mode=install /usr/bin/install -c 'makeSCF' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/makeSCF' /usr/bin/install -c .libs/makeSCF /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/makeSCF /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_seq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_seq' /usr/bin/install -c .libs/extract_seq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_seq /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_qual' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_qual' /usr/bin/install -c .libs/extract_qual /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_qual /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_fastq' /usr/bin/install -c .libs/extract_fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_fastq /bin/sh ../libtool --mode=install /usr/bin/install -c 'index_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/index_tar' /usr/bin/install -c index_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/index_tar /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_dump' /usr/bin/install -c .libs/scf_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_info' /usr/bin/install -c .libs/scf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_info /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_update' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_update' /usr/bin/install -c .libs/scf_update /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_update BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' /bin/sh ../libtool --mode=install /usr/bin/install -c 'get_comment' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/get_comment' /usr/bin/install -c .libs/get_comment /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/get_comment /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_tar' /usr/bin/install -c .libs/hash_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_tar /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_extract' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_extract' /usr/bin/install -c .libs/hash_extract /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_extract /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_list' /usr/bin/install -c .libs/hash_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_list /bin/sh ../libtool --mode=install /usr/bin/install -c 'trace_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/trace_dump' /usr/bin/install -c .libs/trace_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/trace_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_sff' /usr/bin/install -c .libs/hash_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_sff /bin/sh ../libtool --mode=install /usr/bin/install -c 'append_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/append_sff' /usr/bin/install -c .libs/append_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/append_sff /bin/sh ../libtool --mode=install /usr/bin/install -c 'ztr_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/ztr_dump' /usr/bin/install -c .libs/ztr_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/ztr_dump /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_dump_all' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_dump_all' /usr/bin/install -c .libs/srf_dump_all /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_dump_all /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_index_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_index_hash' /usr/bin/install -c .libs/srf_index_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_index_hash /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_extract_linear' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_extract_linear' /usr/bin/install -c .libs/srf_extract_linear /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_extract_linear /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_extract_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_extract_hash' /usr/bin/install -c .libs/srf_extract_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_extract_hash /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf2fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf2fastq' /usr/bin/install -c .libs/srf2fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf2fastq /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf2fasta' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf2fasta' /usr/bin/install -c .libs/srf2fasta /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf2fasta /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_filter' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_filter' BUILDSTDERR: /usr/bin/install -c .libs/srf_filter /builddir/build/BUILDROOT/staden-io_lib-1.libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' BUILDSTDERR: libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64' 12.4-17.fc31.riscv64/usr/bin/srf_filter /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_info' /usr/bin/install -c .libs/srf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_info /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_list' /usr/bin/install -c .libs/srf_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_list make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' Making install in tests make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin" /usr/bin/install -c 'staden-io_lib-config' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/staden-io_lib-config' test -z "/usr/share/man/man1" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man1" /usr/bin/install -c -m 644 './man/man1/srf_index_hash.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man1/srf_index_hash.1' /usr/bin/install -c -m 644 './man/man1/srf_info.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man1/srf_info.1' /usr/bin/install -c -m 644 './man/man1/srf_list.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man1/srf_list.1' /usr/bin/install -c -m 644 './man/man1/srf2fasta.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man1/srf2fasta.1' /usr/bin/install -c -m 644 './man/man1/srf2fastq.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man1/srf2fastq.1' test -z "/usr/share/man/man3" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3" /usr/bin/install -c -m 644 './man/man3/read_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/read_scf_header.3' /usr/bin/install -c -m 644 './man/man3/read_allocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/read_allocate.3' /usr/bin/install -c -m 644 './man/man3/ExperimentFile.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/ExperimentFile.3' /usr/bin/install -c -m 644 './man/man3/write_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/write_reading.3' /usr/bin/install -c -m 644 './man/man3/write_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/write_scf.3' /usr/bin/install -c -m 644 './man/man3/read_deallocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/read_deallocate.3' /usr/bin/install -c -m 644 './man/man3/fwrite_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/fwrite_reading.3' /usr/bin/install -c -m 644 './man/man3/read2scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/read2scf.3' /usr/bin/install -c -m 644 './man/man3/scf2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/scf2read.3' /usr/bin/install -c -m 644 './man/man3/fwrite_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/fwrite_scf.3' /usr/bin/install -c -m 644 './man/man3/write_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/write_scf_header.3' /usr/bin/install -c -m 644 './man/man3/read_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/read_reading.3' /usr/bin/install -c -m 644 './man/man3/read_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/read_scf.3' /usr/bin/install -c -m 644 './man/man3/exp2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/exp2read.3' /usr/bin/install -c -m 644 './man/man3/fread_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/fread_reading.3' /usr/bin/install -c -m 644 './man/man3/read2exp.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/read2exp.3' /usr/bin/install -c -m 644 './man/man3/fread_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man3/fread_scf.3' test -z "/usr/share/man/man4" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man4" /usr/bin/install -c -m 644 './man/man4/Read.4' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/man/man4/Read.4' test -z "/usr/include/io_lib" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib" /usr/bin/install -c -m 644 'io_lib/Read.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/Read.h' /usr/bin/install -c -m 644 'io_lib/scf_extras.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/scf_extras.h' /usr/bin/install -c -m 644 'io_lib/translate.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/translate.h' /usr/bin/install -c -m 644 'io_lib/abi.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/abi.h' /usr/bin/install -c -m 644 'io_lib/fpoint.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/fpoint.h' /usr/bin/install -c -m 644 'io_lib/seqIOABI.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/seqIOABI.h' /usr/bin/install -c -m 644 'io_lib/alf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/alf.h' /usr/bin/install -c -m 644 'io_lib/seqIOCTF.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/seqIOCTF.h' /usr/bin/install -c -m 644 'io_lib/expFileIO.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/expFileIO.h' /usr/bin/install -c -m 644 'io_lib/plain.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/plain.h' /usr/bin/install -c -m 644 'io_lib/scf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/scf.h' /usr/bin/install -c -m 644 'io_lib/sff.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/sff.h' /usr/bin/install -c -m 644 'io_lib/array.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/array.h' /usr/bin/install -c -m 644 'io_lib/compress.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/compress.h' /usr/bin/install -c -m 644 'io_lib/error.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/error.h' /usr/bin/install -c -m 644 'io_lib/mach-io.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/mach-io.h' /usr/bin/install -c -m 644 'io_lib/misc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/misc.h' /usr/bin/install -c -m 644 'io_lib/open_trace_file.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/open_trace_file.h' BUILDSTDERR: /usr/bin/install -c -m 644 'io_lib/tar_format.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.r+ find /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64 -name '*.la' -exec rm -f '{}' ';' + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.12.4-17.fc31 --unique-debug-suffix -1.12.4-17.fc31.riscv64 --unique-debug-src-base staden-io_lib-1.12.4-17.fc31.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/io_lib-1.12.4 iscv64/usr/include/io_lib/tar_format.h' /usr/bin/install -c -m 644 'io_lib/traceType.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/traceType.h' /usr/bin/install -c -m 644 'io_lib/xalloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/xalloc.h' /usr/bin/install -c -m 644 'io_lib/mFILE.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/mFILE.h' /usr/bin/install -c -m 644 'io_lib/stdio_hack.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/stdio_hack.h' /usr/bin/install -c -m 644 'io_lib/vlen.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/vlen.h' /usr/bin/install -c -m 644 'io_lib/hash_table.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/hash_table.h' /usr/bin/install -c -m 644 'io_lib/jenkins_lookup3.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/jenkins_lookup3.h' /usr/bin/install -c -m 644 'io_lib/os.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/os.h' /usr/bin/install -c -m 644 'io_lib/compression.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/compression.h' /usr/bin/install -c -m 644 'io_lib/ztr.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/ztr.h' /usr/bin/install -c -m 644 'io_lib/deflate_interlaced.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/deflate_interlaced.h' /usr/bin/install -c -m 644 'io_lib/srf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/srf.h' /usr/bin/install -c -m 644 'io_lib/pooled_alloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/pooled_alloc.h' /usr/bin/install -c -m 644 'io_lib_config.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/include/io_lib/io_lib_config.h' make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/append_sff explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_fastq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/convert_trace extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/convert_trace extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/append_sff extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_fastq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_qual extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_qual explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_extract explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_seq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/get_comment explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_list extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_extract extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/extract_seq extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/get_comment extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_list explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_sff extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_sff explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_tar explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/makeSCF extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/makeSCF extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/hash_tar explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/index_tar extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/index_tar explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_info extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_info explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_update explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf2fasta extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_update extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf2fasta extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/scf_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf2fastq extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf2fastq explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_dump_all extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_dump_all explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_extract_hash explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_extract_linear extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_extract_hash extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_extract_linear explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_filter extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_filter explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_index_hash explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_list explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_info extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_index_hash extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/srf_list BUILDSTDERR: extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/1828 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs usr/bin/srf_info explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/trace_dump extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/trace_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/ztr_dump explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/lib64/libstaden-read.so.1.1.2 extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/bin/ztr_dump extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/lib64/libstaden-read.so.1.1.2 original debug info size: 1984kB, size after compression: 1876kB /usr/lib/rpm/sepdebugcrcfix: Updated 27 CRC32s, 0 CRC32s did match. mangling shebang in /usr/bin/staden-io_lib-config from /bin/sh to #!/usr/bin/sh Processing files: staden-io_lib-1.12.4-17.fc31.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.NpMUKd + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + DOCDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/doc/staden-io_lib + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/doc/staden-io_lib + cp -pr README /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/doc/staden-io_lib + cp -pr COPYRIGHT /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/doc/staden-io_lib + cp -pr CHANGES /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/doc/staden-io_lib + cp -pr docs/ /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64/usr/share/doc/staden-io_lib + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Provides: libstaden-read.so.1()(64bit) staden-io_lib = 1.12.4-17.fc31 staden-io_lib(riscv-64) = 1.12.4-17.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcurl.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstaden-read.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: staden-io_lib-devel-1.12.4-17.fc31.riscv64 Provides: staden-io_lib-devel = 1.12.4-17.fc31 staden-io_lib-devel(riscv-64) = 1.12.4-17.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libstaden-read.so.1()(64bit) Processing files: staden-io_lib-debugsource-1.12.4-17.fc31.riscv64 Provides: staden-io_lib-debugsource = 1.12.4-17.fc31 staden-io_lib-debugsource(riscv-64) = 1.12.4-17.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: staden-io_lib-debuginfo-1.12.4-17.fc31.riscv64 Provides: debuginfo(build-id) = 0f8d806294c41c0d4cda017cd895820134e49aec debuginfo(build-id) = 176c78781b0b8efd53d2ddc9544d04ed1623d65c debuginfo(build-id) = 19689d402fe385300a34c094373fcbb740dc34a8 debuginfo(build-id) = 199c96dba1017c4f431ef0e19e1babd389067154 debuginfo(build-id) = 19ca61ff6562642aa2e9ed0c60c8d9a121334e7e debuginfo(build-id) = 1f37e6d66e9da1294f998f60fcc9db01e53b099b debuginfo(build-id) = 218fa401c0a6fa461e89ee6f14665808d38bbab5 debuginfo(build-id) = 255812b466ea58d3787502eef1c9c2cdacac539f debuginfo(build-id) = 29bc2b826bf0f7e9da2108a51e2f517c22cf6b79 debuginfo(build-id) = 2ce5454ece109fcd988aead202a4be3bfc2778c9 debuginfo(build-id) = 38315cd2e35334984774d56058e44ca8b134640a debuginfo(build-id) = 3952dd9ddfcdcbf7761687fd7d92ab0472b70080 debuginfo(build-id) = 463c1bc42d9170136103f4e78f2f8ea6c4e02c90 debuginfo(build-id) = 52430bc086b59cc9b9bcb999a5dff1cc9f02095f debuginfo(build-id) = 545113dbf6ec1f4a367910982dee68eb10173d5e debuginfo(build-id) = 615f596ff0f7a09ff10f8e7e005476b2ecbf05d2 debuginfo(build-id) = 6e6a7ffb20c8134dbdf84c5e469590ae7636a7e6 debuginfo(build-id) = 920c51c49131490c0cec1feef466aa20d19f57dc debuginfo(build-id) = 93c9f18ce743f71bcec5ac2d78a7b36ec4cb6434 debuginfo(build-id) = abe43790622f843981d63a6867c30fd4b7057c0e debuginfo(build-id) = b20f51f80e3833c3f5104cd9c24506a603d42781 debuginfo(build-id) = bc2d0ebd941ae56b865a84595196d8a2b360c9c4 debuginfo(build-id) = c0c1b8438f951778cf9ad31f5b4aa1504a915e8a debuginfo(build-id) = ca42d43c20019c1750a26cd73adff475c4398960 debuginfo(build-id) = cd1848452bbc48acf4126a2ad3294b5b539e0a9d debuginfo(build-id) = d1d6814a5b58bc41eb3f3892e657b0a63926ff08 debuginfo(build-id) = e753ce7d68e92a841d37eff575c39c2da5a562ca staden-io_lib-debuginfo = 1.12.4-17.fc31 staden-io_lib-debuginfo(riscv-64) = 1.12.4-17.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: staden-io_lib-debugsource(riscv-64) = 1.12.4-17.fc31 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64 Wrote: /builddir/build/RPMS/staden-io_lib-devel-1.12.4-17.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/staden-io_lib-1.12.4-17.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/staden-io_lib-debugsource-1.12.4-17.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/staden-io_lib-debuginfo-1.12.4-17.fc31.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.tgl4Sf + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-17.fc31.riscv64 + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Child return code was: 0