Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/smoldyn.spec'], chrootPath='/var/lib/mock/f33-build-528279-64707/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/smoldyn.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1611964800 Wrote: /builddir/build/SRPMS/smoldyn-2.63-2.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/smoldyn.spec'], chrootPath='/var/lib/mock/f33-build-528279-64707/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/smoldyn.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1611964800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.g96HDW + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf smoldyn-2.63 + /usr/bin/unzip -qq /builddir/build/SOURCES/smoldyn-2.63.zip + STATUS=0 + '[' 0 -ne 0 ']' + cd smoldyn-2.63 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' Patch #0 (smoldyn-fix_libpaths.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt + rm -rf source/MSVClibs source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f source/vtk/vtkwrapper.cpp source/vtk/vtkwrapper.h + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.vMu24V + umask 022 + cd /builddir/build/BUILD + cd smoldyn-2.63 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B riscv64-redhat-linux-gnu -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B . -S . -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DSMOLDYN_VERSION:STRING=2.63 -DOPTION_TARGET_LIBSMOLDYN:BOOL=OFF -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=OFF -DPYBIND11_FINDPYTHON:BOOL=OFF -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version set to: '2.63' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: OFF -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to incude Python module: OFF -- Option to run Libsmoldyn examples: OFF -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.1.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/usr/include/boost' -- NSV added to source files -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE LIB_INSTALL_DIR LIB_SUFFIX PYBIND11_FINDPYTHON SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/smoldyn-2.63 + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/smoldyn-2.63 -B/builddir/build/BUILD/smoldyn-2.63 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.63/CMakeFiles /builddir/build/BUILD/smoldyn-2.63//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' cd /builddir/build/BUILD/smoldyn-2.63 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.63 /builddir/build/BUILD/smoldyn-2.63 /builddir/build/BUILD/smoldyn-2.63 /builddir/build/BUILD/smoldyn-2.63 /builddir/build/BUILD/smoldyn-2.63/CMakeFiles/smoldyn.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/smoldyn-2.63/CMakeFiles/smoldyn.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/smoldyn-2.63/CMakeFiles/smoldyn.dir/depend.internal". Dependee "/builddir/build/BUILD/smoldyn-2.63/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/smoldyn-2.63/CMakeFiles/smoldyn.dir/depend.internal". Scanning dependencies of target smoldyn make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 7%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/List.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/List.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/List.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 5%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/math2.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/math2.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/math2.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 12%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/parse.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/parse.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/parse.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 15%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/queue.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/queue.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/queue.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 10%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/opengl2.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/opengl2.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/opengl2.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 17%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/random2.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/random2.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/random2.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 2%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/Geometry.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/Geometry.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/Geometry.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 20%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/Rn.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/Rn.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/Rn.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 22%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/RnSort.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/RnSort.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/RnSort.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 25%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/rxnparam.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/rxnparam.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c: In function 'void rdfmaketable()': /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c:935:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 935 | scanf("%s",string); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c:938:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 938 | scanf("%i",&n); | ~~~~~^~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c:942:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 942 | scanf("%lf",&eps); | ~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c:946:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 946 | scanf("%s",string); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c: In function 'void rdfmaketableprob()': /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c:1024:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 1024 | scanf("%s",string); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c:1027:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 1027 | scanf("%i",&n); | ~~~~~^~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c:1031:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 1031 | scanf("%lf",&eps); | ~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/rxnparam.c:1039:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 1039 | scanf("%s",string); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SimCommand.c: In function 'int scmdopenfiles(cmdssptr, int)': /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SimCommand.c:776:11: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 776 | scanf("%s",str2); | ~~~~~^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 27%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/SimCommand.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/SimCommand.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SimCommand.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 30%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/Sphere.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/Sphere.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/Sphere.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 40%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/SFMT/SFMT.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/SFMT/SFMT.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SFMT/SFMT.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 35%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/SurfaceParam.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/SurfaceParam.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c: In function 'void xdfmaketableirrev()': /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c:613:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 613 | scanf("%i",&n); | ~~~~~^~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c:616:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 616 | scanf("%lf %lf",&xlo,&xhi); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c:618:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 618 | scanf("%lf %lf",&xfitlo,&xfithi); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c:620:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 620 | scanf("%lf",&eps); | ~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c:622:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 622 | scanf("%s",ynmro); | ~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c:625:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 625 | scanf("%s",ynxdf); } | ~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c: In function 'void xdfmaketable()': /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c:689:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 689 | scanf("%i",&n); | ~~~~~^~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c:693:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 693 | scanf("%lf",&eps); | ~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/libSteve/SurfaceParam.c:696:7: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 696 | scanf("%s",yn); | ~~~~~^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 37%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/Zn.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/Zn.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/Zn.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 32%] Building CXX object CMakeFiles/smoldyn.dir/source/libSteve/string2.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/libSteve/string2.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/libSteve/string2.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 45%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolboxes.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 42%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolbng.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolbng.c: In function 'int bngrunBNGL2(bngptr, char*, char*)': /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolbng.c:1334:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1334 | system(string); // generate network | ~~~~~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 50%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 52%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolfilament.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 55%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 60%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolport.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 62%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smollattice.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 57%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolmolec.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 47%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolcmd.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolcmd.c: In function 'CMDcode cmdpause(simptr, cmdptr, char*)': /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolcmd.c:326:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 326 | scanf("%c",&c); | ~~~~~^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 67%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolrule.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 75%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolwall.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 65%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolreact.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 77%] Building CXX object CMakeFiles/smoldyn.dir/source/NextSubVolume/StructuredGrid.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/NextSubVolume/StructuredGrid.cpp.o -c /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/StructuredGrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' D.52105]'In file included from /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/StructuredGrid.h:29, from /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/StructuredGrid.cpp:8: /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/StructuredGrid.cpp: In member function 'Kairos::StructuredGrid::get_face_between(int, int) const': /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Geometry.h:255:61: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] 255 | const Vect3d& lower_right_corner) : low(lower_corner) | ^ D.52106].mem[0]'In file included from /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/StructuredGrid.h:28, from /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/StructuredGrid.cpp:8: /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Vector.h:187:10: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] 187 | OPERATOR(-) | ^ D.52105].mem[0]'/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Vector.h:187:10: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] D.52106].mem[1]'/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Vector.h:187:10: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] D.52105].mem[1]'/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Vector.h:187:10: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] D.52106].mem[2]'/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Vector.h:187:10: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] D.52105].mem[2]'/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Vector.h:187:10: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] D.52107].mem[0]'/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Vector.h:187:10: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] D.52107].mem[1]'/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Vector.h:187:10: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] D.52107].mem[2]'/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Vector.h:187:10: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 80%] Building CXX object CMakeFiles/smoldyn.dir/source/NextSubVolume/Species.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/NextSubVolume/Species.cpp.o -c /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 70%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 82%] Building CXX object CMakeFiles/smoldyn.dir/source/NextSubVolume/ReactionEquation.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/NextSubVolume/ReactionEquation.cpp.o -c /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/ReactionEquation.cpp make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' D.55861].tmp'In file included from /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/ReactionEquation.cpp:8: /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/ReactionEquation.cpp: In function 'Kairos::operator+(Kairos::ReactionSide&, Kairos::Species&)': /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/ReactionEquation.h:41:11: warning: may be used uninitialized in this function [-Wmaybe-uninitialized] 41 | tmp(arg.tmp){} | ~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 90%] Building CXX object CMakeFiles/smoldyn.dir/source/NextSubVolume/Io.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/NextSubVolume/Io.cpp.o -c /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Io.cpp make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 92%] Building CXX object CMakeFiles/smoldyn.dir/source/NextSubVolume/Geometry.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/NextSubVolume/Geometry.cpp.o -c /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 72%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smolsurface.c.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 87%] Building CXX object CMakeFiles/smoldyn.dir/source/NextSubVolume/Kairos.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/NextSubVolume/Kairos.cpp.o -c /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/Kairos.cpp make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 97%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smoldyn.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smoldyn.cpp:45:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 45 | fgets(root,STRCHAR,stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smoldyn.cpp:48:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 48 | fgets(flags,STRCHAR,stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 85%] Building CXX object CMakeFiles/smoldyn.dir/source/NextSubVolume/NextSubvolumeMethod.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/NextSubVolume/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [ 95%] Building CXX object CMakeFiles/smoldyn.dir/source/NextSubVolume/nsvc.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.63/source/libSteve -I/builddir/build/BUILD/smoldyn-2.63/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.63 -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume -isystem /usr/include/boost -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -o CMakeFiles/smoldyn.dir/source/NextSubVolume/nsvc.cpp.o -c /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [100%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/smoldyn.dir/source/libSteve/Geometry.c.o CMakeFiles/smoldyn.dir/source/libSteve/List.c.o CMakeFiles/smoldyn.dir/source/libSteve/math2.c.o CMakeFiles/smoldyn.dir/source/libSteve/opengl2.c.o CMakeFiles/smoldyn.dir/source/libSteve/parse.c.o CMakeFiles/smoldyn.dir/source/libSteve/queue.c.o CMakeFiles/smoldyn.dir/source/libSteve/random2.c.o CMakeFiles/smoldyn.dir/source/libSteve/Rn.c.o CMakeFiles/smoldyn.dir/source/libSteve/RnSort.c.o CMakeFiles/smoldyn.dir/source/libSteve/rxnparam.c.o CMakeFiles/smoldyn.dir/source/libSteve/SimCommand.c.o CMakeFiles/smoldyn.dir/source/libSteve/Sphere.c.o CMakeFiles/smoldyn.dir/source/libSteve/string2.c.o CMakeFiles/smoldyn.dir/source/libSteve/SurfaceParam.c.o CMakeFiles/smoldyn.dir/source/libSteve/Zn.c.o CMakeFiles/smoldyn.dir/source/libSteve/SFMT/SFMT.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn.dir/source/NextSubVolume/StructuredGrid.cpp.o CMakeFiles/smoldyn.dir/source/NextSubVolume/Species.cpp.o CMakeFiles/smoldyn.dir/source/NextSubVolume/ReactionEquation.cpp.o CMakeFiles/smoldyn.dir/source/NextSubVolume/NextSubvolumeMethod.cpp.o CMakeFiles/smoldyn.dir/source/NextSubVolume/Kairos.cpp.o CMakeFiles/smoldyn.dir/source/NextSubVolume/Io.cpp.o CMakeFiles/smoldyn.dir/source/NextSubVolume/Geometry.cpp.o CMakeFiles/smoldyn.dir/source/NextSubVolume/nsvc.cpp.o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smoldyn.h:543:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 543 | typedef struct latticestruct { | ^ /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smoldyn.h:543:16: note: a different type is defined in another translation unit 543 | typedef struct latticestruct { | ^ /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smoldyn.h:567:24: note: the first difference of corresponding definitions is field 'nsv' 567 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smoldyn.h:567:24: note: a field of same name but different type is defined in another translation unit 567 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smoldyn.h:543:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 543 | typedef struct latticestruct { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: the incompatible type is defined here 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:76:8: warning: 'nsv_concentration_point' violates the C++ One Definition Rule [-Wodr] 76 | double nsv_concentration_point(NextSubvolumeMethod* nsv,int id, double *point, int dim); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:508:8: note: type mismatch in parameter 1 508 | double nsv_concentration_point(NextSubvolumeMethod* nsv,int id, double *point, int dim) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:508:8: note: 'nsv_concentration_point' was previously declared here 508 | double nsv_concentration_point(NextSubvolumeMethod* nsv,int id, double *point, int dim) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:77:6: warning: 'nsv_kill_molecule' violates the C++ One Definition Rule [-Wodr] 77 | void nsv_kill_molecule(NextSubvolumeMethod* nsv,int id, double *point, int dim); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:533:6: note: type mismatch in parameter 1 533 | void nsv_kill_molecule(NextSubvolumeMethod* nsv,int id, double *point, int dim) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:533:6: note: 'nsv_kill_molecule' was previously declared here 533 | void nsv_kill_molecule(NextSubvolumeMethod* nsv,int id, double *point, int dim) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:74:13: warning: 'nsv_integrate' violates the C++ One Definition Rule [-Wodr] 74 | extern void nsv_integrate(NextSubvolumeMethod* nsv,double dt,struct portstruct *port,struct latticestruct *lattice); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:300:6: note: type mismatch in parameter 1 300 | void nsv_integrate(NextSubvolumeMethod* nsv,double dt, portstruct *port, latticestruct *lattice) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:300:6: note: 'nsv_integrate' was previously declared here 300 | void nsv_integrate(NextSubvolumeMethod* nsv,double dt, portstruct *port, latticestruct *lattice) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:63:29: warning: 'nsv_new' violates the C++ One Definition Rule [-Wodr] 63 | extern NextSubvolumeMethod* nsv_new(double *min, double *max, double *dx, int dim); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:36:22: note: return value type mismatch 36 | NextSubvolumeMethod* nsv_new(double* min, double* max, double* dx, int n) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:36:22: note: 'nsv_new' was previously declared here 36 | NextSubvolumeMethod* nsv_new(double* min, double* max, double* dx, int n) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:67:13: warning: 'nsv_add_species' violates the C++ One Definition Rule [-Wodr] 67 | extern void nsv_add_species(NextSubvolumeMethod* nsv,int id,double D,char *btype,int dim); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:98:6: note: type mismatch in parameter 1 98 | void nsv_add_species(NextSubvolumeMethod* nsv,int id,double D,char *btype,int dim) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:98:6: note: 'nsv_add_species' was previously declared here 98 | void nsv_add_species(NextSubvolumeMethod* nsv,int id,double D,char *btype,int dim) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:80:13: warning: 'nsv_add_mol' violates the C++ One Definition Rule [-Wodr] 80 | extern void nsv_add_mol(NextSubvolumeMethod* nsv,int id, double* pos, int dim); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:549:6: note: type mismatch in parameter 1 549 | void nsv_add_mol(NextSubvolumeMethod* nsv,int id, double* pos, int dim) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:549:6: note: 'nsv_add_mol' was previously declared here 549 | void nsv_add_mol(NextSubvolumeMethod* nsv,int id, double* pos, int dim) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:66:13: warning: 'nsv_add_interface' violates the C++ One Definition Rule [-Wodr] 66 | extern void nsv_add_interface(NextSubvolumeMethod* nsv,int id, double dt, double *start,double *end,double *norm,int dim); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:74:6: note: type mismatch in parameter 1 74 | void nsv_add_interface(NextSubvolumeMethod* nsv,int id,double dt, double *start,double *end,double *norm,int dim) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:74:6: note: 'nsv_add_interface' was previously declared here 74 | void nsv_add_interface(NextSubvolumeMethod* nsv,int id,double dt, double *start,double *end,double *norm,int dim) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:71:13: warning: 'nsv_add_reaction' violates the C++ One Definition Rule [-Wodr] 71 | extern void nsv_add_reaction(NextSubvolumeMethod* nsv,struct rxnstruct *reaction); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:216:6: note: type mismatch in parameter 1 216 | void nsv_add_reaction(NextSubvolumeMethod* nsv,rxnstruct *reaction) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:216:6: note: 'nsv_add_reaction' was previously declared here 216 | void nsv_add_reaction(NextSubvolumeMethod* nsv,rxnstruct *reaction) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:72:13: warning: 'nsv_add_surface' violates the C++ One Definition Rule [-Wodr] 72 | extern void nsv_add_surface(NextSubvolumeMethod* nsv,struct surfacestruct* surface); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:182:13: note: type mismatch in parameter 1 182 | extern void nsv_add_surface(NextSubvolumeMethod* nsv,surfacestruct* surface) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:182:13: note: 'nsv_add_surface' was previously declared here 182 | extern void nsv_add_surface(NextSubvolumeMethod* nsv,surfacestruct* surface) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:64:13: warning: 'nsv_delete' violates the C++ One Definition Rule [-Wodr] 64 | extern void nsv_delete(NextSubvolumeMethod* nsv); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:52:6: note: type mismatch in parameter 1 52 | void nsv_delete(NextSubvolumeMethod* nsv) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:52:6: note: 'nsv_delete' was previously declared here 52 | void nsv_delete(NextSubvolumeMethod* nsv) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:79:12: warning: 'nsv_get_species_copy_numbers' violates the C++ One Definition Rule [-Wodr] 79 | extern int nsv_get_species_copy_numbers(NextSubvolumeMethod* nsv, int id, const int** copy_numbers, const double** positions); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:580:5: note: type mismatch in parameter 1 580 | int nsv_get_species_copy_numbers(NextSubvolumeMethod* nsv, int id,const int **copy_numbers, const double** positions) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:580:5: note: 'nsv_get_species_copy_numbers' was previously declared here 580 | int nsv_get_species_copy_numbers(NextSubvolumeMethod* nsv, int id,const int **copy_numbers, const double** positions) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:65:13: warning: 'nsv_print' violates the C++ One Definition Rule [-Wodr] 65 | extern void nsv_print(NextSubvolumeMethod* nsv, char **bufferptr); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:58:6: note: type mismatch in parameter 1 58 | void nsv_print(NextSubvolumeMethod* nsv, char** bufferptr) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:58:6: note: 'nsv_print' was previously declared here 58 | void nsv_print(NextSubvolumeMethod* nsv, char** bufferptr) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:78:13: warning: 'nsv_molcount' violates the C++ One Definition Rule [-Wodr] 78 | extern void nsv_molcount(NextSubvolumeMethod* nsv, int *ret_array); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:519:6: note: type mismatch in parameter 1 519 | void nsv_molcount(NextSubvolumeMethod* nsv, int *ret_array) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:519:6: note: 'nsv_molcount' was previously declared here 519 | void nsv_molcount(NextSubvolumeMethod* nsv, int *ret_array) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.h:75:13: warning: 'nsv_molcountspace' violates the C++ One Definition Rule [-Wodr] 75 | extern void nsv_molcountspace(NextSubvolumeMethod* nsv,int id, double *low, double *high, int dim, int nbins, int axis, int *ret_array); | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:478:6: note: type mismatch in parameter 1 478 | void nsv_molcountspace(NextSubvolumeMethod* nsv,int id, double *low, double *high, int dim, int nbins, int axis, int *ret_array) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/NextSubvolumeMethod.h:127:7: note: type name 'Kairos::NextSubvolumeMethod' should match type name 'NextSubvolumeMethod' 127 | class NextSubvolumeMethod { | ^ /builddir/build/BUILD/smoldyn-2.63/source/NextSubVolume/nsvc.cpp:478:6: note: 'nsv_molcountspace' was previously declared here 478 | void nsv_molcountspace(NextSubvolumeMethod* nsv,int id, double *low, double *high, int dim, int nbins, int axis, int *ret_array) { | ^ /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolboxes.c:761:9: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 761 | ntemp=allocZV(intpower(3,dim)-1); // neigh | ^ /usr/include/stdlib.h:542:14: note: in a call to allocation function 'calloc' declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^ In function 'snprintf', inlined from 'rxnsetproduct' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1427:12, inlined from 'rxnsetproducts' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1562:19, inlined from 'rxnsupdateparams' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2282:21, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2373:22, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2360:5, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2200:15, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2168:5: /usr/include/bits/stdio2.h:70:35: warning: '__builtin___snprintf_chk' specified bound 2048 exceeds destination size 256 [-Wstringop-overflow=] 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^ In function 'snprintf', inlined from 'rxnsetproduct' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1443:12, inlined from 'rxnsetproducts' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1562:19, inlined from 'rxnsupdateparams' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2282:21, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2373:22, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2360:5, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2200:15, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2168:5: /usr/include/bits/stdio2.h:70:35: warning: '__builtin___snprintf_chk' specified bound 2048 exceeds destination size 256 [-Wstringop-overflow=] 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^ In function 'snprintf', inlined from 'rxnsetproduct' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1495:13, inlined from 'rxnsetproducts' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1562:19, inlined from 'rxnsupdateparams' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2282:21, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2373:22, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2360:5, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2200:15, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2168:5: /usr/include/bits/stdio2.h:70:35: warning: '__builtin___snprintf_chk' specified bound 2048 exceeds destination size 256 [-Wstringop-overflow=] 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^ In function 'snprintf', inlined from 'rxnsetproduct' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1511:13, inlined from 'rxnsetproducts' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1562:19, inlined from 'rxnsupdateparams' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2282:21, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2373:22, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2360:5, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2200:15, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2168:5: /usr/include/bits/stdio2.h:70:35: warning: '__builtin___snprintf_chk' specified bound 2048 exceeds destination size 256 [-Wstringop-overflow=] 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^ In function 'snprintf', inlined from 'rxnsetproduct' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1517:13, inlined from 'rxnsetproducts' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1562:19, inlined from 'rxnsupdateparams' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2282:21, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2373:22, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2360:5, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2200:15, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2168:5: /usr/include/bits/stdio2.h:70:35: warning: '__builtin___snprintf_chk' specified bound 2048 exceeds destination size 256 [-Wstringop-overflow=] 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^ In function 'snprintf', inlined from 'rxnsetproduct' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1527:13, inlined from 'rxnsetproducts' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1562:19, inlined from 'rxnsupdateparams' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2282:21, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2373:22, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2360:5, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2200:15, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2168:5: /usr/include/bits/stdio2.h:70:35: warning: '__builtin___snprintf_chk' specified bound 2048 exceeds destination size 256 [-Wstringop-overflow=] 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^ In function 'snprintf', inlined from 'rxnsetproduct' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1531:14, inlined from 'rxnsetproducts' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1562:19, inlined from 'rxnsupdateparams' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2282:21, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2373:22, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2360:5, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2200:15, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2168:5: /usr/include/bits/stdio2.h:70:35: warning: '__builtin___snprintf_chk' specified bound 2048 exceeds destination size 256 [-Wstringop-overflow=] 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^ In function 'snprintf', inlined from 'rxnsetproduct' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1533:14, inlined from 'rxnsetproducts' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1562:19, inlined from 'rxnsupdateparams' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2282:21, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2373:22, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2360:5, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2200:15, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2168:5: /usr/include/bits/stdio2.h:70:35: warning: '__builtin___snprintf_chk' specified bound 2048 exceeds destination size 256 [-Wstringop-overflow=] 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^ In function 'snprintf', inlined from 'rxnsetproduct' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1541:14, inlined from 'rxnsetproducts' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:1562:19, inlined from 'rxnsupdateparams' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2282:21, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2373:22, inlined from 'rxnsupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolreact.c:2360:5, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2200:15, inlined from 'simupdate' at /builddir/build/BUILD/smoldyn-2.63/source/Smoldyn/smolsim.cpp:2168:5: /usr/include/bits/stdio2.h:70:35: warning: '__builtin___snprintf_chk' specified bound 2048 exceeds destination size 256 [-Wstringop-overflow=] 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^ make[1]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' [100%] Built target smoldyn make[1]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.63/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.AWsNGV + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64 ++ dirname /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64 + cd smoldyn-2.63 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/smoldyn-2.63 -B/builddir/build/BUILD/smoldyn-2.63 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.63/CMakeFiles /builddir/build/BUILD/smoldyn-2.63//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' cd /builddir/build/BUILD/smoldyn-2.63 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.63 /builddir/build/BUILD/smoldyn-2.63 /builddir/build/BUILD/smoldyn-2.63 /builddir/build/BUILD/smoldyn-2.63 /builddir/build/BUILD/smoldyn-2.63/CMakeFiles/smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' make[2]: Nothing to be done for 'CMakeFiles/smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' [100%] Built target smoldyn make[1]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.63/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/smoldyn-2.63' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/smoldyn-2.63' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64/usr/bin/smoldyn + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 2.63-2.fc33 --unique-debug-suffix -2.63-2.fc33.riscv64 --unique-debug-src-base smoldyn-2.63-2.fc33.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/smoldyn-2.63 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64/usr/bin/smoldyn extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64/usr/bin/smoldyn original debug info size: 12748kB, size after compression: 12032kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 3210 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: smoldyn-2.63-2.fc33.riscv64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.L7Q07V + umask 022 + cd /builddir/build/BUILD + cd smoldyn-2.63 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64/usr/share/licenses/smoldyn + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64/usr/share/licenses/smoldyn + cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64/usr/share/licenses/smoldyn + cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64/usr/share/licenses/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.63-2.fc33 smoldyn(riscv-64) = 2.63-2.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.63-2.fc33.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.g7zZnV + umask 022 + cd /builddir/build/BUILD + cd smoldyn-2.63 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64/usr/share/doc/smoldyn-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64/usr/share/doc/smoldyn-doc + cp -pr documentation/BioNetGen documentation/SmolCrowd documentation/SmolEmulate documentation/Smoldyn documentation/libSteve documentation/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.63-2.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debugsource-2.63-2.fc33.riscv64 Provides: smoldyn-debugsource = 2.63-2.fc33 smoldyn-debugsource(riscv-64) = 2.63-2.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.63-2.fc33.riscv64 Provides: debuginfo(build-id) = 066cd47d6b558053c74e49a80f7f2d946b4adbdd smoldyn-debuginfo = 2.63-2.fc33 smoldyn-debuginfo(riscv-64) = 2.63-2.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(riscv-64) = 2.63-2.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64 Wrote: /builddir/build/RPMS/smoldyn-2.63-2.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.63-2.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.63-2.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.63-2.fc33.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.P6GwVV + umask 022 + cd /builddir/build/BUILD + cd smoldyn-2.63 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.63-2.fc33.riscv64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0